mRNA_A-nodosum_M_contig123.63.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig123.63.1
Unique NamemRNA_A-nodosum_M_contig123.63.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig123.63.1 vs. uniprot
Match: D7FQY4_ECTSI (Copper transport protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQY4_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 1.980e-38
Identity = 73/118 (61.86%), Postives = 89/118 (75.42%), Query Frame = 1 
Query:   43 FTCDVGPLLFDWWTIESCTSLYLSCVPVIMLGLARHWAFSCVSGSNKSSKGIPTSRTTTLLENSGLETSSTGVQPGRLGKWHRFSWTMISTTGAALSLLSMLVVMTYNSVLFMAVLVG 396
            FTCDVG L+F WWT+ +C + YLSC+PVI+L +ARHWAF+  + +  SSK    SR T LL+ +G E SS G  P  + +W RF WTM+STTGAALSLLSMLVVMTYNS LF+AVLVG
Sbjct:   16 FTCDVGELVFGWWTVNTCWAFYLSCIPVILLSVARHWAFAIATSTATSSKRGSASRNTALLDGNGFENSS-GRPP--INRWTRFVWTMVSTTGAALSLLSMLVVMTYNSGLFLAVLVG 130
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig123.63.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQY4_ECTSI1.980e-3861.86Copper transport protein n=2 Tax=Ectocarpus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig123contigA-nodosum_M_contig123:545515..551635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size754
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhigh affinity copper transporter
Ec32 orthologEc-09_003290.1
Cds size495
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866660.1123977-CDS-A-nodosum_M_contig123:545514..5457801680866660.1123977-CDS-A-nodosum_M_contig123:545514..545780Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig123 545515..545780 +
1680866660.1268568-CDS-A-nodosum_M_contig123:550226..5503111680866660.1268568-CDS-A-nodosum_M_contig123:550226..550311Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig123 550227..550311 +
1680866660.13566-CDS-A-nodosum_M_contig123:551232..5513761680866660.13566-CDS-A-nodosum_M_contig123:551232..551376Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig123 551233..551376 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866660.1448524-UTR-A-nodosum_M_contig123:551376..5516351680866660.1448524-UTR-A-nodosum_M_contig123:551376..551635Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig123 551377..551635 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig123.63.1prot_A-nodosum_M_contig123.63.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig123 545515..551376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig123.63.1

>prot_A-nodosum_M_contig123.63.1 ID=prot_A-nodosum_M_contig123.63.1|Name=mRNA_A-nodosum_M_contig123.63.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=165bp
MSMDMDMDMSMSFEFTCDVGPLLFDWWTIESCTSLYLSCVPVIMLGLARH
WAFSCVSGSNKSSKGIPTSRTTTLLENSGLETSSTGVQPGRLGKWHRFSW
TMISTTGAALSLLSMLVVMTYNSVLFMAVLVGGENDRPQLFVALMFDFSI
FPRFMLALQDRTDG*
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mRNA from alignment at A-nodosum_M_contig123:545515..551635+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig123.63.1 ID=mRNA_A-nodosum_M_contig123.63.1|Name=mRNA_A-nodosum_M_contig123.63.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6121bp|location=Sequence derived from alignment at A-nodosum_M_contig123:545515..551635+ (Ascophyllum nodosum dioecious)
ATGAGCATGGACATGGACATGGACATGAGCATGAGCTTCGAGTTCACGTG
CGACGTCGGACCTCTGCTTTTTGACTGGTGGACCATCGAATCGTGCACAT
CTCTATACCTTTCGTGTGTTCCCGTCATCATGCTAGGACTCGCCCGACAC
TGGGCATTCAGCTGCGTTTCCGGCTCAAACAAGTCTTCAAAGGGGATCCC
AACGTCAAGAACCACGACGCTCCTCGAGAATTCTGGCCTCGAAACATCCT
CAACAGGGGTGCAACCGTGAGTACAATAATATCGAGTCAGAAAAAGCGTT
GTGTCTATTAATAGTTAGTTGGAGACTACAGGTAAACAAACTTCTTTACC
GGATTCCATTAAAAATACGGTTGTATTTACAATATAGCTCTACAGTATAC
AAGTATTTTCTCGGGCATCACGTATTAAAATTTGGAGTACATTGGTAGAC
TATATAGCTAGGCCCATATAGCTAAGGGTACGTACTTGGTGGTATCTGAA
GCTGTTTCAAGCCCATCGAGAACCAATGAGCTAATTGATCAAAGGTTTTG
AGTATGTGTTGTGAACTTCACGACTATTTTTTTTCTCCGAGCTGACCTAG
GCTACCAGTACCTACGAGTGGGAGGGATTCCCTGCTGGACCCGTCTTTAG
CAGGGTCTTTAGAGCTGGCAGCATGCTCATACAAGACTGACTCTCTTGTA
CGGTAGTGAACAGCTCTGACTATACTATCAACCATGTAAAGCAAGTATTT
ACCTGGTACAGTAACTTCAGATTGTGCTTGGCACGCGTGCCACGGACTCG
TTTAACCACTCAAGACATTTTTCCCTGTTCAACTGGCCGGAAGTGGAATT
GGCACCCACGCCCGGTTGTAACCCAATTCACTGAACCTGGTGATATTTTT
TGTTGTGTTGGAATAAAAGTTGTTAGCTCTTTAGGACAGCCGGGCGAGCA
CAAAAAACGTACGAGTAGTCAACTACAATGTGGCTTTTCTTGAACTTGGG
ATTATCTCCGTATTTCTCCGCACAACATATCCTTTATGTGTGTGTGTTTT
CCTCCCATTCATTCTGGACATCAAGTTCGTTGGACGTACCAGCCGGGGTC
ACACAGGAGGAAGGTCACACAGGATTTCTCATCCACCTTCTTTCTGCGGT
GCGTGCCTTAATTTTTCTCGGGAGAAGGATTCACCCATTCCTTTCCCTCG
TCGACCCTGAAGTCGAATTTTGTGTACTGACGATTCAATCGTTCTCCACC
CGTTGGGCATTTTTATTTTCATTTTTTAGTTTTTCAGTGAGAAAAAATTC
GTTTGCCGGGATCGAACTCACGTCCCAACGTGTCAGAGGTTACATGGTAC
TTCTGAGCTACCGGGGCTGCACTTCTTTTCTTACATCATTACAGCGTTGT
TTCTCACATTCAGCGTATTGGTTACCAACCCGAAAAAAATCCTTTAGGCC
GGTCGCCCCGGTAGCTCAGAGGTAACTTCGTATCTTCTGACACATTGGGA
CATGAGTTCGAATCCCGGTAAACGGAATTTTTCTCACTAATAAATAAAAA
TAAAAATGCCCAACAAGTGGAGAACGATTAAATCATCAGTACAAAAAATT
CGACTTCACGGTCGACGAGGGAAGGGAACGGCTGAATCCTTCTCGCGAGA
AAAAATTAAGGCACGCACCGCAGAAGGAAGGTGGATGAGAAGTCCTGTGT
GACCCCGGCTGGTACGTCCAACGAACTTGATGTCCAGAATAAATGGGAAG
AAAATAAACATAGACACACGTGGTCAATCCCCCTCGTGGTCTGCTTGAAG
AAGGAAAAGAGAACAAAAGAAAACAAAAGAGAAAGTCTGGCAGCGCCCCT
CTCCCCCCGCCCCCCGACGCTGCTCGTTATTAATAGATTAAAAGGAGAAA
ATAAAATAAAAATCACGTGGCGCATCTAGTATAAATCAACCGGTTATAAT
GTGTGACCATACATACATGGTCCTTGCTTATCCTGGTAGTGGTCAGCTAA
ACAGGAAAAATGTTTTTTTTTCGTGTCGCCGTTCGCGCCTGAGAATCTGG
TCTCGTTAGACGGATTCGGCCGTCCCGTCCCGTTCCGTCCCGCTCATTCT
CTTTCTCCCGATTTCCGCGATATAGACTATGACAATAATGATGATTATGG
CGTACAGCGTCCATCTTACCGTTATCCTCCACCGGGTCAGTCCAGAGTTT
ATTCGATCACGCAATCGCGTACCTATCGCGTTCGCCGCAGAGAGTCCACC
GGCACAGGCCCAGTAGTCCTCAAGGTAGTTCGAGTAACGTGTGCTGCTTA
GTCAGGTAACCCCATAGACCAAGCAATGTGCGCCTCTCTTTTCCCACGCC
CTCTAATGATACGGTGGACATTTTCAATACGTACGGTACACACAGCTGTT
GTATCGGAGACAAAAAAAACAGTAGATACTATTCATATATATTTAATACG
TGACCGAACACAATTCATCACTATATAGGGCTCTAATTAGATAATGCCGT
GGTGAGTAATCACCAGATTCAGCCTGAGTGTGGAAAATGAGCAGGCTGAC
GCTAGACGGGATGGCCGAACCTGTTCCATGAGACCAACTTCACGGGAGGC
GCGAACGGGTACATAAACAACATCATTTTTCCAAGTTCAGCTGACCACGG
GCAGGATTGACAGGCAACCTTACTCGGTTGATCCATACTCTCCTATTTTC
CATAGTGTAAGTGATTACCATCCATACTCTCCTATTATTCAAGTGAGATA
CAAGTTTGTTGTATCTCACTACTTGTAGCTTGTAGCCGATGGGCCTCAAC
TTGCTAGGTTTCCAATCCCTCCTACCGCAACGTTGCCATTCTGCATGTGA
TCACTAAGGATCTTCTCATCTCTCCCCGGTTCTCGCCTTACAGCACTCCT
ACAACTCGTCAGCCAAAGGTTGAAATTTTACTTTTTCACGTTCTCAAGCT
TTCCGTTGTGGAAGAAAAAAATTAACAAAGAGTACGGTGGGTTTCTCCCC
GACATTTTAATGTTGACCCAAGCCCCGATTGGTTTATGGTGAGACGCATT
ATTATGGTATATTATTACTACCCTGCTTAATTATGTGCTACACTGTTTTT
GTTTTTGTCTGGTGTCCCTGCGTGGCTATTAATGTAAGTGTACAGTATAA
CGGTGGGTCTCTCCCCGACACTATCCTGTTGACCCAAGGTTACTACCATT
GGGAAACCCATTTAAATGCCTTGAAGAGGTTGTAATTTTAGTCTTGTATT
AAACAGCAATTTTTATACACGTCGTAGAAAGTCCCTGCGGACTTGTTGTA
AAATGTAAATAATGTATTTCTCTTTACCAATTACAATATTGTAACATGTC
TTGTGTTCTAGACTAAAGCCCTTACCGTAAAAAGAGTCGATGGCACTTTT
ATATTGTTGTTGTTGTTGTTGTCTTCACATTAAAAACCGTTCTGACCTCT
ATCCAGTACCCTTCTCTTTCTTACTCTTCAAGGCAAAGAAACGAATTTCC
GTGGTCACACGCTAACCCAAAATAAGGTACAGAAAAATAAAATAAAATAA
AAAAGACCCAGAGAAAGTCCAACACTTGCGAAAAAAACATATGATACAGG
TTCCTAAAAGTAACAGGTTCAGAAAAACAAGAAGCAGGTTAGGGTAGGAA
AACCCCAAAAAAGGAAGTAGAGCCCATCGCTCCAAACTCGGAAGCTGAGT
CACAAACAAAATATCCTACGTAAATACCAATACAGGTAAAAAAATAAATT
AAATGAAGAGGAAGTTATCCCCCCCCCTACGAAGCCGGGAGTGTTCATCG
TCGGGTTCCCGCCGACCAGGCCATCCCCCTCAACACCTTGGAGCTGTGAG
AGGGCAGAAAATAAAATAATAATAATAACCACGCACGTCATGCAAGATAG
TACCCTATGTCCTAGACAGTATCTCGACGCGCCCCTGCTATGCCGGGGAG
CTCTTTGTCGGGTTTCTCACTAGCCTGGCAAATACGGGATAAAAACACCA
GAAAAAAAAAACACATTAGGTTTAACTCAAGGCAAGCGGTCATGTATATT
ATTATAAACCTATTTAATTATTTAATAAAATGTTTTTTTTAGCTTTTGTC
TGGTGTTCCTGCATGGCGATTAATGTAAGTGTACAGCATAACGGTGGGTT
TCTCCCCGGTATTATACTGTTGACCCACTGTTACTACCATCGGGGAACCC
GTTTAAATGCCATGAAGAGGTTTTGTATTTGAAGCCCTTGATCCCACCTA
AACGTTTTGACATTTTCCCCCCTGACTGGGGGATGCTCAGAAGGTCTAGA
TGCGTTCGGATTAAACACAAATTCGGTTTTTCACAAGAATCGAACTCACA
CGACTTCCGCACTATGAATAGCAGGTGTACGTGGTGTTACCTACTATTAA
TAGACCACTCGGGCGACGATTTGTACTGCTTTATTATTGAAAACTCTGAG
CCCTTTCCAAAATCCACATTTTTTCGACCCCAGGTTCGGTGAATATTCGG
GAGACCTTGCATTGTCGGCTTTTAAAGGGTGCATGTTGTACACTACCAGG
TACTGTCTTTGGTTCACCACATATTAGTTCAGTGGTCCTACGCACAGACC
TGATGATAGTTCCTTGGGGATAAGAATAACCCGCAACTACTTGTTGTATC
AGCGCAGACATAGCGCGTTCCCAACGGATTTTTTCCCTCGAAATCTCATC
GGGCAAAAACAGGGGGCGCCTCGGCAAATGGCATCGTTTTTCGTGGACGA
TGATATCCACGACGGGTGCGGCACTTTCGCTGCTCTCTATGCTCGTGGTG
AGTCTTCGCCTTGGCAAGTCGACAACCGCTTTGAAATACACGCGCGTCTT
GCCTCGACGAGCAACCGTGTGTCATCTGTTTAAGCGGCTACTCGCCTAGA
CACGTGTCGAAGTCGAAGTCGTATCATGGTTCCGAGTTGCAGGTATATCG
TTGCGAAAGGCGGCAGTTTCGAGCGAATCGTCATCTTCAAATACTAATTA
TGTCCCTTAGCCGTGTGGTACTTTCTCGCAGTTGAACTCATGTAGTGTAA
TTGTAATACTGCAAGCACCTGTGTCGTGCAACTGTACTCTGAACTGAAAT
TTACCACTGCAAGCACCACTGTAGTATAATTTTACTAATACTGCAAACAC
TTTTGTAGTGTAATTGTGTACTCTTACAAGCACTAGTGTAGTGTAATTGT
ACCACTCCAAGCACCAGTGTAGTGTAATTGTACTACTGCAAGCACCAGTG
TAGTGTAATTTTACTTCTGTAAGAACCCTTAGTGTAATTTTACCACTGTA
AGCACCAGTGTAGTGTAATTGTACTACTCCAAGCACCAGCGTACTGTAAT
TTTTTCTCTTTGTCTGTTGTATAGAGAGTTCGTCGTACGTTCTTTCCTCC
CGGATGGTGTTTTTCCACCTTGTGACCACGGGCTGAAATTTTTTACATCA
GCTTATGTGAGATTTCAATTAAAAAAAACAAACAATCAATTGCACTACTG
CAAGCACTAGTATATTTCATAGTGTAATTATACTTCTGTAAGCACCAGTG
TAGTGTAATTTTACTACTGTAAGCACCAGTGTAGTATAATTGTACTAATT
ATACTGTTAGCACCAGTGTAGTGTATTCTTACTACTGCAAACACCAGTGT
AGTGTAATTGTACTACTGCAACCTCCAGTGTAGTGATGTCGCGTGGCACT
TGTCCGATTTAATTCCAGGTAATGACGTACAACAGCGTTCTCTTCATGGC
GGTGCTTGTTGGAGGTGAGAACGATCGACCGCAGCTGTTTGTGGCCCTCA
TGTTTGACTTTTCAATATTTCCACGTTTCATGCTTGCTCTACAGGACAGA
ACTGACGGTTAAATTAATATTAATATTATAGGAGAGCGGTTAGAGTTTTC
CCTTCGAAAAATAACAAAACAAGAGACGAAGTGTTCGCGAACCACCTCGG
CACGTTGAAACAGTTTTTCAATCTCGCTTCGTAGATTCGCGTCGAAATCA
CTCATCGAAAAAAAGAACCTGTGTTCAACATCCATGGTCTATGATGTTCA
TGGAACTCCGCCGCTGTCAGCCATCATCCGCCTGACGCGGACAGGCGACT
AGACGTAGCGCTGTGACAAGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig123:545515..551635+

>mRNA_A-nodosum_M_contig123.63.1 ID=mRNA_A-nodosum_M_contig123.63.1|Name=mRNA_A-nodosum_M_contig123.63.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=495bp|location=Sequence derived from alignment at A-nodosum_M_contig123:545515..551635+ (Ascophyllum nodosum dioecious)
ATGAGCATGGACATGGACATGGACATGAGCATGAGCTTCGAGTTCACGTG
CGACGTCGGACCTCTGCTTTTTGACTGGTGGACCATCGAATCGTGCACAT
CTCTATACCTTTCGTGTGTTCCCGTCATCATGCTAGGACTCGCCCGACAC
TGGGCATTCAGCTGCGTTTCCGGCTCAAACAAGTCTTCAAAGGGGATCCC
AACGTCAAGAACCACGACGCTCCTCGAGAATTCTGGCCTCGAAACATCCT
CAACAGGGGTGCAACCGGGGCGCCTCGGCAAATGGCATCGTTTTTCGTGG
ACGATGATATCCACGACGGGTGCGGCACTTTCGCTGCTCTCTATGCTCGT
GGTAATGACGTACAACAGCGTTCTCTTCATGGCGGTGCTTGTTGGAGGTG
AGAACGATCGACCGCAGCTGTTTGTGGCCCTCATGTTTGACTTTTCAATA
TTTCCACGTTTCATGCTTGCTCTACAGGACAGAACTGACGGTTAA
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