prot_A-nodosum_M_contig12083.4.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig12083.4.2
Unique Nameprot_A-nodosum_M_contig12083.4.2
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length119
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig12083.4.2 vs. uniprot
Match: D7G6R7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R7_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 4.710e-30
Identity = 64/112 (57.14%), Postives = 84/112 (75.00%), Query Frame = 0 
Query:    1 MRDVVVHMGPHGLDLWLKKQHGGVVVSKYLELAPDV-HPGQAAGVQVGDLVVSVDSIVAEGPESLRERLIDVHLAKSDKKAIMKVLTRVPLTDGRGEPLASAMKYSAVDMVK 111
            MRD+ VHMGP+GL L L  +HGGVVV    ++ P V +PGQAAGV++GDL+VSVD+IVAE P  L + L D  L++S K  ++KVL+ V LTDG+GEPL  A+ Y+A+DMVK
Sbjct: 1300 MRDLAVHMGPNGLGLQLDVRHGGVVVDGLTQMPPGVSNPGQAAGVRLGDLLVSVDTIVAETPRRLAQGLKDTGLSQSGKLVVVKVLSDVLLTDGQGEPLQQALDYAAIDMVK 1411
[Close]
BLAST of mRNA_A-nodosum_M_contig12083.4.2 vs. uniprot
Match: A0A6H5L351_9PHAE (DNMT1-RFD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L351_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.860e-18
Identity = 49/93 (52.69%), Postives = 64/93 (68.82%), Query Frame = 0 
Query:    1 MRDVVVHMGPHGLDLWLKKQHGGVVVSKYLELAPDV-HPGQAAGVQVGDLVVSVDSIVAEGPESLRERLIDVHLAKSDKKAIMKVLTRVPLTD 92
            MRD+ VHMGP+GL L L  +HGGVVV    E+ P V +PGQAAGV++GDL+VSVD+IVAE P  L + L D  L++S K  ++K   R   T+
Sbjct: 1760 MRDLAVHMGPNGLGLQLDVRHGGVVVDGLTEMPPGVSNPGQAAGVRLGDLLVSVDTIVAETPRRLAQGLKDTGLSQSGKLVVVKACDRFVKTN 1852
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig12083.4.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6R7_ECTSI4.710e-3057.14Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L351_9PHAE1.860e-1852.69DNMT1-RFD domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig12083contigA-nodosum_M_contig12083:5900..7358 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig12083.4.2mRNA_A-nodosum_M_contig12083.4.2Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig12083 5824..7859 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig12083.4.2 ID=prot_A-nodosum_M_contig12083.4.2|Name=mRNA_A-nodosum_M_contig12083.4.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=119bp
MRDVVVHMGPHGLDLWLKKQHGGVVVSKYLELAPDVHPGQAAGVQVGDLV
VSVDSIVAEGPESLRERLIDVHLAKSDKKAIMKVLTRVPLTDGRGEPLAS
AMKYSAVDMVKARCWKEK*
back to top