mRNA_A-nodosum_M_contig12083.4.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig12083.4.2
Unique NamemRNA_A-nodosum_M_contig12083.4.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig12083.4.2 vs. uniprot
Match: D7G6R7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R7_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 2.520e-50
Identity = 99/163 (60.74%), Postives = 124/163 (76.07%), Query Frame = 1 
Query:    1 RAAGKEALKSCGFFAEEQRDVLQRQCSAFAVDRHSLRAAGLAFKRETSAVVMRDVVVHMGPHGLDLWLKKQHGGVVVSKYLELAPDV-HPGQAAGVQVGDLVVSVDSIVAEGPESLRERLIDVHLAKSDKKAIMKVLTRVPLTDGRGEPLASAMKYSAVDMVK 486
            R+AG  AL SCGF AEEQR  L+R CS+FAVD HSLRAAGLAF+ +TS  VMRD+ VHMGP+GL L L  +HGGVVV    ++ P V +PGQAAGV++GDL+VSVD+IVAE P  L + L D  L++S K  ++KVL+ V LTDG+GEPL  A+ Y+A+DMVK
Sbjct: 1249 RSAGLLALNSCGFAAEEQRRALKRLCSSFAVDLHSLRAAGLAFELKTSGWVMRDLAVHMGPNGLGLQLDVRHGGVVVDGLTQMPPGVSNPGQAAGVRLGDLLVSVDTIVAETPRRLAQGLKDTGLSQSGKLVVVKVLSDVLLTDGQGEPLQQALDYAAIDMVK 1411
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BLAST of mRNA_A-nodosum_M_contig12083.4.2 vs. uniprot
Match: A0A6H5L351_9PHAE (DNMT1-RFD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L351_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 1.210e-38
Identity = 83/144 (57.64%), Postives = 103/144 (71.53%), Query Frame = 1 
Query:    1 RAAGKEALKSCGFFAEEQRDVLQRQCSAFAVDRHSLRAAGLAFKRETSAVVMRDVVVHMGPHGLDLWLKKQHGGVVVSKYLELAPDV-HPGQAAGVQVGDLVVSVDSIVAEGPESLRERLIDVHLAKSDKKAIMKVLTRVPLTD 429
            R+AG  AL SCGF AEEQR  L+R CS+FAVD HSLRAAGLAF+ +T   VMRD+ VHMGP+GL L L  +HGGVVV    E+ P V +PGQAAGV++GDL+VSVD+IVAE P  L + L D  L++S K  ++K   R   T+
Sbjct: 1709 RSAGLSALNSCGFAAEEQRRALKRLCSSFAVDLHSLRAAGLAFELKTCGWVMRDLAVHMGPNGLGLQLDVRHGGVVVDGLTEMPPGVSNPGQAAGVRLGDLLVSVDTIVAETPRRLAQGLKDTGLSQSGKLVVVKACDRFVKTN 1852
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig12083.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6R7_ECTSI2.520e-5060.74Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L351_9PHAE1.210e-3857.64DNMT1-RFD domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig12083contigA-nodosum_M_contig12083:5824..7859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G6R7
PFAMsAuxin_resp,Bromodomain,DNMT1-RFD,DUF3591,WSD
Model size586
Max annot lvl2759|Eukaryota
KEGG koko:K03125
KEGG Pathwayko03022,map03022
Hectar predicted targeting categoryother localisation
Exons5
Evalue7.72e-31
EggNOG OGsCOG5179@1|root,KOG0008@2759|Eukaryota
Descriptionnegative regulation of protein autoubiquitination
Cds size357
COG categoryK
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig12083.4.2prot_A-nodosum_M_contig12083.4.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig12083 5900..7358 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866634.4900222-UTR-A-nodosum_M_contig12083:5823..58991680866634.4900222-UTR-A-nodosum_M_contig12083:5823..5899Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig12083 5824..5899 -
1680866634.544937-UTR-A-nodosum_M_contig12083:7358..74311680866634.544937-UTR-A-nodosum_M_contig12083:7358..7431Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig12083 7359..7431 -
1680866634.555638-UTR-A-nodosum_M_contig12083:7779..78591680866634.555638-UTR-A-nodosum_M_contig12083:7779..7859Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig12083 7780..7859 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866634.5032961-CDS-A-nodosum_M_contig12083:5899..59231680866634.5032961-CDS-A-nodosum_M_contig12083:5899..5923Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12083 5900..5923 -
1680866634.5124853-CDS-A-nodosum_M_contig12083:6437..65211680866634.5124853-CDS-A-nodosum_M_contig12083:6437..6521Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12083 6438..6521 -
1680866634.5230212-CDS-A-nodosum_M_contig12083:6721..68501680866634.5230212-CDS-A-nodosum_M_contig12083:6721..6850Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12083 6722..6850 -
1680866634.534914-CDS-A-nodosum_M_contig12083:7238..73581680866634.534914-CDS-A-nodosum_M_contig12083:7238..7358Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12083 7239..7358 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig12083.4.2

>prot_A-nodosum_M_contig12083.4.2 ID=prot_A-nodosum_M_contig12083.4.2|Name=mRNA_A-nodosum_M_contig12083.4.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=119bp
MRDVVVHMGPHGLDLWLKKQHGGVVVSKYLELAPDVHPGQAAGVQVGDLV
VSVDSIVAEGPESLRERLIDVHLAKSDKKAIMKVLTRVPLTDGRGEPLAS
AMKYSAVDMVKARCWKEK*
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mRNA from alignment at A-nodosum_M_contig12083:5824..7859-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig12083.4.2 ID=mRNA_A-nodosum_M_contig12083.4.2|Name=mRNA_A-nodosum_M_contig12083.4.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2036bp|location=Sequence derived from alignment at A-nodosum_M_contig12083:5824..7859- (Ascophyllum nodosum dioecious)
CGAGCAGCCGGAAAGGAGGCTCTCAAGTCTTGCGGCTTCTTCGCTGAAGA
ACAACGGGACGTGCTTCAGCGGCAATGCAGGTGACGCGGATGGTACCATC
ACCATGCGCGTGGCCGTCAGCACTTTGCGATGGCCTCGACAAAACGGGTC
TCATGCTGCTCCTTTCTACGGTCGGGCGTCCGCGTAGCTGTATCCCTTCG
CAAGTCGTGCCGACGGGAGATGACGGATTTTGCAGCACAGCCTGTGCGTA
TAGTGCGGGGTTATATATATATATAGTAAATAATGAGGGAAAGCTTCTGG
TTGCGTTGGGTGGCAGATGGGAATCTGATCGTGGTGACGTCGGGCTTGCG
CCCAGTGAAACGCCTCCGACTTGTGCGTCGTTACCAGTGTGCGTCTCTTC
GCCTCTATTCCGCCGCCCTCGTGGTCAGCGCTTTCGCCGTGGATCGGCAC
AGCCTACGCGCGGCCGGACTGGCCTTTAAGCGCGAGACGTCGGCCGTGGT
CATGCGCGACGTCGTTGTTCACATGGGGCCTCACGGGCTGGATCTGTGGC
TAAAGAAACAGCACGGTGGCGTTGTGGTGTCCAAGTACCTTGAGCTCGCA
CCTGACGTGCACCCAGGACAGGTGGGAAGAAAATCACGGCAACGTGGGGA
CGTAGCGGGGCGATCGGTAACCGTAGAGATGGTTTCTTTTAGGATTCGAC
GCTTGCTTTGCAGGCATCAGCATTCTATCCCTTTGATCAATTCCTATTGT
CGCCGTCGTTGTCGTTGCCGTTGTCGTTGTGACCGTCTGCCCTTGCAGCA
ATTGTCGTACTGTATGTCTCTTCCGAGGTGCAACCATGGCGTTCTAACGT
ACAGTAATTTGGCACTGTATTGTACGCAGGCATGGATTTGGTATAGGTCG
TGTGCGCTTCGACGTGAGGCAATGGCAAACCTACCCGTGGCGACGCTACT
TGGTACCAGGTAGCATACTCTTGTATCTCTCTTAGTCTCTCAAACGCGTG
ACATTACAGGCGGCGGGCGTGCAAGTCGGGGACTTAGTTGTATCGGTCGA
CAGCATCGTGGCGGAGGGGCCTGAGTCGTTGCGCGAACGGTTGATCGATG
TACATCTGGCGAAATCGGACAAGAAGGCCATAATGAAGGTGAGCCTCAAC
ATTCGTCGTGGTGAATGCTCGTGTTTTTGATTGAAAATGCCATGGAAAGC
AGTGTTCGGACTGAACAAAACGTTGGGCTGAGCAATTCTTAGCTTGTGGG
TTACGTGGCGACGCGACCTCGCTGCAGCTTGACTTGACTTGCTTTTTTGT
CGTTTGTTTGGCTCAAAATGTGACGACGCTCTATCCAGGTATTGACACGA
GTGCCGCTGACGGACGGACGAGGAGAGCCACTGGCGAGCGCGATGAAGTA
CAGCGCAGTGGACATGGTCAAGGTCAGAACAGAAACCCTTTGCTCCGGTA
GTTCTCATCATGATCGATTCTCCTGATGTTGCCGACACTGAGAAAAGGGC
AACTTTCTCGATGTACTGCTGCATCGTTGTGGTACGTCCGGAGCGCGGTC
GATGTGTTACGACGGACGGCTCTTCTGAAGGCAACAGCTAGTCCTAGTGG
GCCGTATCCCATTCCATCCGTGATCGGGGTACGAGTGGAGCGACCACCTG
CACACAAAACACAACATTTGGGCTGCTTGACACGGGTGCTATTTACTAAG
CATTATTTATTGCAGTTCAATATTACTAGTTCAATCGACTACTTCTCGAG
TAGTGCGTTGGTTTTGACACAAGAGAGGTCAACGTGCATATAAACCTCTC
CCCGCGCCCCGAGCGAAAGTGCTTTCGCCGTTGTACATGGCAGTCAGTCC
CCACGGTCGCGTCATGACGAGAACGCGTCCTCTCCCGACTGTTTCCATTT
CCTCTCCTACACTCTCTCGCCGCTCTACCTTAACAGGCGCGCTGCTGGAA
GGAGAAATAGTGCTGCACCACAGCTTCGTGATTGGGGCTGACTGGGAGGG
TCAGGCCTGCCGTGAGTGGAGACTGGGGGTTTCATT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig12083:5824..7859-

>mRNA_A-nodosum_M_contig12083.4.2 ID=mRNA_A-nodosum_M_contig12083.4.2|Name=mRNA_A-nodosum_M_contig12083.4.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=357bp|location=Sequence derived from alignment at A-nodosum_M_contig12083:5824..7859- (Ascophyllum nodosum dioecious)
ATGCGCGACGTCGTTGTTCACATGGGGCCTCACGGGCTGGATCTGTGGCT
AAAGAAACAGCACGGTGGCGTTGTGGTGTCCAAGTACCTTGAGCTCGCAC
CTGACGTGCACCCAGGACAGGCGGCGGGCGTGCAAGTCGGGGACTTAGTT
GTATCGGTCGACAGCATCGTGGCGGAGGGGCCTGAGTCGTTGCGCGAACG
GTTGATCGATGTACATCTGGCGAAATCGGACAAGAAGGCCATAATGAAGG
TATTGACACGAGTGCCGCTGACGGACGGACGAGGAGAGCCACTGGCGAGC
GCGATGAAGTACAGCGCAGTGGACATGGTCAAGGCGCGCTGCTGGAAGGA
GAAATAG
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