prot_A-nodosum_M_contig1201.17.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1201.17.1
Unique Nameprot_A-nodosum_M_contig1201.17.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length297
Homology
BLAST of mRNA_A-nodosum_M_contig1201.17.1 vs. uniprot
Match: A0A6H5JJ59_9PHAE (RPAP3_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ59_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 4.530e-40
Identity = 112/301 (37.21%), Postives = 157/301 (52.16%), Query Frame = 0
Query:    7 SRELDAGFHVETSKLHHELHVALKEDESRKKADAMKKRAIHAAATY---DEFRHMVSCAQLTPVTRKEMEMLSDTKRGWQGRSGVQQSMDRVKQGGNSQHMWFSRRRPTTGSSVTSDKSKEGLLHAPRNHAQFQRAWRRQCHSDNDRRHYMNLIGPGRLPELFRVEMEPHILAQMVSIICGEF--QPLL------EGQDNRFASSSLLRPRDQANASRSSYAEGVGDCSSWETSSNLFATCGLEWLDALTRTCRFELNVLFLEKTEKLKLSRVFGFIAATFAEKVDENSLEVSAVQNAYGL 296
            SR+ D   H+ETS LH EL  ALK      + D   ++  H+  +     +   +V  A+     RKEMEMLSD KRGWQGR G       V   G        RR   +  +     +K G L AP++HAQFQR WRR+C ++ +RR Y+ L+GP     LFRVEMEP +L Q++S++C EF  QP          Q+N   S +  R     +A+ S+     G+ S+ E  + L   C LEWL AL+RT RF +N+LFL   EK  L+R F    A F ++      E+S+++ AY +
Sbjct:    3 SRQGDGTLHLETSALHLELSAALKARGCEPEEDGRDEKTSHSYGSKLRRIQAHGLVRSAKPCHGVRKEMEMLSDPKRGWQGRVGGVAPTTNVS--GRIGRQKAPRRTQRSVDTALRGGAKAGPLRAPKDHAQFQRDWRRRCRTNGERRDYLRLVGPKNASALFRVEMEPDVLGQVISVVCEEFPFQPQRIDAATPATQENEERSGAPTR----GDAAGSTAITANGNASADEAGARL---C-LEWLRALSRTGRFAVNILFLADNEKQALARAFDLTTAVFGDE------EISSLRKAYAV 287          
BLAST of mRNA_A-nodosum_M_contig1201.17.1 vs. uniprot
Match: D7G465_ECTSI (RPAP3_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G465_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 1.290e-34
Identity = 87/229 (37.99%), Postives = 128/229 (55.90%), Query Frame = 0
Query:   72 MEMLSDTKRGWQGRSGVQQSMDRVKQGGNSQHMWFSRRRPTTGSSVTSDKSKEGLLHAPRNHAQFQRAWRRQCHSDNDRRHYMNLIGPGRLPELFRVEMEPHILAQMVSIICGEFQPLLEGQDNRFASSSLLRPRDQANASRSSYAEGVGDCSSWETSSNLFATCG----LEWLDALTRTCRFELNVLFLEKTEKLKLSRVFGFIAATFAEKVDENSLEVSAVQNAYGL 296
            MEMLS  KRGWQGR G      +V   G++      RR   +  +  S  +K G L AP++HAQFQR WRR+C ++ +RR Y+ LIGP  +  LFRVEMEP +L Q++S++C EF PL      R  ++    P ++  +   +  +  G  +     S      G    +EWL AL+RT RF +N+LFL   EK +L+R F  I+A   ++ DE   E+S+++ AY +
Sbjct:    1 MEMLSVPKRGWQGRVGGVAPTTKVS--GSTGRQKAPRRTQRSVDTAISGGAKAGPLRAPKDHAQFQRDWRRRCCTNGERRDYLRLIGPKNVSALFRVEMEPDVLGQVLSVVCQEF-PL---HPQRLDTAMPATPENEERSGAPTRGDAGGSAAETANGSASADKAGARFCVEWLWALSRTGRFAVNILFLADKEKQELARAFDLISAVLGDEDDE---EISSLRKAYAV 220          
BLAST of mRNA_A-nodosum_M_contig1201.17.1 vs. uniprot
Match: A0A7S4DL22_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DL22_HETAK)

HSP 1 Score: 106 bits (264), Expect = 2.450e-24
Identity = 65/173 (37.57%), Postives = 95/173 (54.91%), Query Frame = 0
Query:   16 VETSKLHHELHVALKEDESRKKADAMKKRAIHAAATYDEFRHMVSCAQLTPVTRKEMEMLSDTKRGWQGRSGVQQSMDRVKQGGNSQHMWFSRRRPTTGSSVTSDKSKEGLLHA------PRNHAQFQRAWRRQCHSDNDRRHYMNLIGPGRLPELFRVEMEPHILAQMVSII 182
            + T KL  EL   L++D + ++ D MKKRAIH A TYDEFR+MV CA   PVTRKE+E LS   +GWQ  S  Q  +                  P T S+    K+ +G + A      P+N  +F+R WRR+C++D  +  Y+ L+GP RL  LF  +++  +L Q++  +
Sbjct:   12 LNTKKLQKELIQGLEDDRNYQRTDDMKKRAIHVAGTYDEFRNMVLCANQQPVTRKELESLSKPSKGWQN-SRTQSGL------------------PGTSSARAKKKTGQGEIKASKKLEVPKNSVEFERDWRRKCNTDLKKIKYLRLVGPRRLAALFAGDLDAALLGQLLGAL 165          
BLAST of mRNA_A-nodosum_M_contig1201.17.1 vs. uniprot
Match: A0A1V9Z2T7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z2T7_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 6.220e-18
Identity = 60/166 (36.14%), Postives = 89/166 (53.61%), Query Frame = 0
Query:   17 ETSKLHHELHVALKEDESRKKADAMKKRAIHAAATYDEFRHMVSCAQLTPVTRKEMEMLSDTKRGWQGRSGVQQSMDRVKQGGNSQHMWFSRRRPTTGSSVTSDKSKEGLLHAPRNHAQFQRAWRRQCHSDNDRRHYMNLIGPGRLPELFRVEMEPHILAQMVSII 182
            +T+ L  EL  AL+ED   K  D MKKRAIH A++YDEF++ V CA L PV+ KE++ LS ++R                Q     H   +  R TTG+   S+ S+      P++  +F R W+R C SD  +  Y+ L  P RL +LF+ EM+  + A +V+ +
Sbjct:   10 DTASLQKELVQALEEDRKYKATDEMKKRAIHTASSYDEFKNFVLCADLKPVSSKELQNLSKSER----------------QRNRLYHKKAASVRATTGTLTGSNDSRR----PPKSSVEFLRTWKRSCTSDAGKYEYLVLTSPARLGKLFQAEMDADLFADIVACL 155          
BLAST of mRNA_A-nodosum_M_contig1201.17.1 vs. uniprot
Match: A0A6G0X454_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X454_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 6.710e-18
Identity = 60/178 (33.71%), Postives = 90/178 (50.56%), Query Frame = 0
Query:   17 ETSKLHHELHVALKEDESRKKADAMKKRAIHAAATYDEFRHMVSCAQLTPVTRKEMEMLSDTKRGWQGRSGVQQSMDRVKQGGNSQHMWFSRRRPTTGSSVTSDKSKEGLLHAPRNHAQFQRAWRRQCHSDNDRRHYMNLIGPGRLPELFRVEMEPHILAQMVSIICGEFQPLLEGQD 194
            +T+ L  EL +AL+ED   KK D MKKRAIH AA+YDEFR+ V CA L PV+ K+++ LS + R            +R+ Q   +  +  SR +  +    T+     G          F R WRR C +  D+  YM L  P R  ++F  E+E  ++ Q++  +  EF+ +    D
Sbjct:   10 DTAALQKELAIALEEDRKYKKTDEMKKRAIHTAASYDEFRNFVLCADLKPVSSKDLQNLSKSDR----------RRNRMYQTKPNNPLDASRAKTLSACKKTTPPDTSG---------DFLRTWRRSCPTHRDKYQYMRLTTPARFRKMFASELEADLMIQLIECMSEEFENINPAND 168          
BLAST of mRNA_A-nodosum_M_contig1201.17.1 vs. uniprot
Match: W4H561_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H561_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.290e-17
Identity = 60/182 (32.97%), Postives = 95/182 (52.20%), Query Frame = 0
Query:   17 ETSKLHHELHVALKEDESRKKADAMKKRAIHAAATYDEFRHMVSCAQLTPVTRKEMEMLSDTKR----GWQGRSGVQQSMDRVKQGGNSQHMWFSRRRPTTGSSVTSDKSKEGLLHAPRNHAQFQRAWRRQCHSDNDRRHYMNLIGPGRLPELFRVEMEPHILAQMVSIICGEFQPLLEGQD 194
            +T+ L  EL +AL+ED   K  D MKKRAIH AA+YD+FR+ V CA L PV+ KE++ LS ++R    G+Q +S +              H+  S+ +   G        K+     P    +F R WRR C +  D+  Y+ +  P R+ +LF+ E++  ++ Q+V+ +  +F  L    D
Sbjct:   10 DTAALQKELVIALEEDRKYKLTDDMKKRAIHTAASYDDFRNFVLCADLKPVSSKELQNLSKSERKRNRGYQTKSLL--------------HVDTSKAKTLVG--------KQDAAVPPATSVEFIRTWRRSCLTQRDKYKYLQVTTPPRVAKLFQAELDSDLMLQIVACLSAQFVNLNPNND 169          
BLAST of mRNA_A-nodosum_M_contig1201.17.1 vs. uniprot
Match: A0A7S2REI2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REI2_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 7.260e-17
Identity = 58/163 (35.58%), Postives = 85/163 (52.15%), Query Frame = 0
Query:   24 ELHVALKEDESRKKADAMKKRAIHAAATYDEFRHMVSCAQLTPVTRKEMEMLSDTKRGWQGRSGVQQSMDRVKQGGNSQHMWFSRRRPTTGSSVTSDKSKEGLLHAPRNHAQFQRAWRRQCHSDNDRRHYMNLIGPGRLPELFRVEMEPHILAQMVSIICGEF 186
            EL +AL+ED      D  KKR I  AA+YDEFRH+V+CA L  ++R E+E LS  K+GW   +   Q+  R            SRRR           S +  +  P +  +F+R W+R C S +DR  Y+ L  P  LP LF  +M+  ++++++S  C  F
Sbjct:   53 ELSMALEEDRKHHVTDEAKKRHITTAASYDEFRHLVACADLKRLSRSEIESLSQKKKGWARPAPASQAGARP-----------SRRRGNKARGAAVPIS-QFPVQPPPSRMEFERDWKRHCRSHDDRVRYLMLCTPDSLPGLFHADMDVTLMSEVISA-CAHF 202          
BLAST of mRNA_A-nodosum_M_contig1201.17.1 vs. uniprot
Match: A0A024UPP0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UPP0_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.440e-16
Identity = 61/181 (33.70%), Postives = 92/181 (50.83%), Query Frame = 0
Query:   17 ETSKLHHELHVALKEDESRKKADAMKKRAIHAAATYDEFRHMVSCAQLTPVTRKEMEMLSDTKRGWQGRSGVQQSMDRVKQGGNSQHMWFSRRRPTTGSSVTSDKSKEGLLHA---PRNHAQFQRAWRRQCHSDNDRRHYMNLIGPGRLPELFRVEMEPHILAQMVSIICGEFQPLLEGQD 194
            +T+ L  EL +AL+ED   K  D MKKRAIH AA+YD+FR+ V CA L PV+ KE++ LS ++R    R+ + Q+   V                      T  K+  G L A   P    +F R WRR C + + +  Y+ +  P RL +LF  E++  ++ Q+V+ +  +F  L    D
Sbjct:   10 DTAALQKELALALEEDRKYKLTDEMKKRAIHTAASYDDFRNFVLCADLKPVSSKELQNLSKSERK---RNRMYQAKTAVVD-------------------TTKSKTLVGELDAAVPPATSVEFLRTWRRSCVTQDAKYKYLQVTTPERLQKLFHAELDSDLMLQIVACLNAQFVNLNPNND 168          
BLAST of mRNA_A-nodosum_M_contig1201.17.1 vs. uniprot
Match: K3WRK5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRK5_GLOUD)

HSP 1 Score: 84.3 bits (207), Expect = 1.730e-15
Identity = 60/184 (32.61%), Postives = 97/184 (52.72%), Query Frame = 0
Query:    1 MASNAMSRELDAGFH--VETSKLHHELHVALKEDESRKKADAMKKRAIHAAATYDEFRHMVSCAQLTPVTRKEMEMLSDTKRGWQGRSGVQQSMDRVKQGGNSQHMWFSRRRPTTGSSVTSDKSKEGLLHAPRNHAQFQRAWRRQCHSDNDRRHYMNLIGPGRLPELFRVEMEPHILAQMVSII 182
            MA+   S EL +  H   +T+ L  EL  AL++D   K  D+MKKRAIH A  YDEF+++V+CA L P++++E+   S  +R    ++ +   M   K  G    +    + P T            L   P N  +F R WRR   S++++  Y+ L  P RL E+F+ +M+  ++A++V I+
Sbjct:    1 MATTPRSNELTSIEHGCFDTAALQQELAQALEDDRVYKLTDSMKKRAIHTATNYDEFKNLVACADLKPISQRELRDFSRNER----QTNLSYKMKARKAFGRDLQL----KAPLTA-----------LNQPPANAVEFCRNWRRYLKSNDEKLRYLMLTTPARLSEIFKSDMDADLMAEIVQIL 165          
BLAST of mRNA_A-nodosum_M_contig1201.17.1 vs. uniprot
Match: A0A7S3PK13_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PK13_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.900e-15
Identity = 81/266 (30.45%), Postives = 120/266 (45.11%), Query Frame = 0
Query:   24 ELHVALKEDESRKKADAMKKRAIHAAATYDEFRHMVSCAQ--LTPVTRKEMEMLSDTKR-GWQGRSGVQQSMDRVKQGGNSQHMWFSRRRPTTGSSVTSDKSKEGLLHAPRNHAQFQRAWRRQCHSDNDRRHYMNLIGPGRLPELFRVEMEPHILAQMVSIICGEFQPLLEGQDNRFASSSLLRPRDQANASRSSYAEGVGDCSSWETSSNLFATCGLEWLDALTRTCRFELNVLFLEKTEKLKLSRVFGFIAATFAEKVDENSLE 286
            EL  A+  D  RK  D MKKR+I  A +YDEFRH+V CA+    P+T KEM  ++ T R G + RS    SM   K      + + SR +     S     S +  L  P+N   F RAWRR C +  ++ HY+  I    +P +F+VE+      ++ SI+      L  G  + +   SL R  +     +   A+ V                 L +L+ L++T  F+  + FL K EK  +   F  I   F+   DE  L+
Sbjct:   16 ELATAVASDRRRKAVDEMKKRSILTAGSYDEFRHLVKCAENDQKPLTTKEMMAVNGTARLGEEARSKFP-SMTAHKSSSGGSYYFNSREQREKEQSSNFVNSVKLNLSVPKNAQDFDRAWRRNCRTMGEKFHYLINIPVENIPNIFKVELN-----ELGSIV----HSLNYGLQSIYEKFSLDRD-ESLQEQKIQTAKKV-----------------LNFLETLSQTKSFKFALDFLSKGEKKYVQEAFNRIQLLFSANEDETELD 253          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1201.17.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJ59_9PHAE4.530e-4037.21RPAP3_C domain-containing protein n=1 Tax=Ectocarp... [more]
D7G465_ECTSI1.290e-3437.99RPAP3_C domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S4DL22_HETAK2.450e-2437.57Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1V9Z2T7_9STRA6.220e-1836.14Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6G0X454_9STRA6.710e-1833.71Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
W4H561_9STRA1.290e-1732.97Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A7S2REI2_9STRA7.260e-1735.58Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A024UPP0_9STRA2.440e-1633.70Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
K3WRK5_GLOUD1.730e-1532.61Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S3PK13_9STRA2.900e-1530.45Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025986RNA-polymerase II-associated protein 3-like, C-terminal domainPFAMPF13877RPAP3_Ccoord: 129..262
e-value: 5.3E-15
score: 55.8
IPR031733Dynein attachment factor, N-terminalPFAMPF15867Dynein_attach_Ncoord: 17..82
e-value: 3.3E-17
score: 62.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..105
NoneNo IPR availablePANTHERPTHR28572:SF1COILED-COIL DOMAIN-CONTAINING PROTEIN 103coord: 16..278
IPR042422Coiled-coil domain-containing protein 103PANTHERPTHR28572COILED-COIL DOMAIN-CONTAINING PROTEIN 103coord: 16..278

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1201contigA-nodosum_M_contig1201:84958..99590 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1201.17.1mRNA_A-nodosum_M_contig1201.17.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1201 84813..101980 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1201.17.1 ID=prot_A-nodosum_M_contig1201.17.1|Name=mRNA_A-nodosum_M_contig1201.17.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=297bp
MASNAMSRELDAGFHVETSKLHHELHVALKEDESRKKADAMKKRAIHAAA
TYDEFRHMVSCAQLTPVTRKEMEMLSDTKRGWQGRSGVQQSMDRVKQGGN
SQHMWFSRRRPTTGSSVTSDKSKEGLLHAPRNHAQFQRAWRRQCHSDNDR
RHYMNLIGPGRLPELFRVEMEPHILAQMVSIICGEFQPLLEGQDNRFASS
SLLRPRDQANASRSSYAEGVGDCSSWETSSNLFATCGLEWLDALTRTCRF
ELNVLFLEKTEKLKLSRVFGFIAATFAEKVDENSLEVSAVQNAYGL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025986RPAP3-like_C
IPR031733Dynein_attach_N
IPR042422CC103