prot_A-nodosum_M_contig120.53.3 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig120.53.3
Unique Nameprot_A-nodosum_M_contig120.53.3
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length490
Homology
BLAST of mRNA_A-nodosum_M_contig120.53.3 vs. uniprot
Match: D8LJT5_ECTSI (Temporarily Assigned Gene name family member (Tag-262) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT5_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 1.510e-71
Identity = 259/547 (47.35%), Postives = 293/547 (53.56%), Query Frame = 0
Query:    1 MADEDELFAQFLGEINSAVAEPV---------EDGGGASDTASVGEIEGGDTIA-------EDTARRKASTETTPLALPAAKKPKVMGKLVAAALPMKAGTASAVAPKPAAPRVEATKSLANSGPPARP------ASKVSKDGS---AGYGTSGAVEVSPGAFVRPRKDGPVAVPAGNPAFGEMHGNGGAPRGDS--RRGGGE-----------------------SRDGDGRMLPEANGAHRTSGSGGMQGQHPGASQLRGHMGIHH--SQMPGA---MMPGNNG---MGMPTGGGMGMNMGMMGDGIRGDYGGGYG-----------------MPPVMNMGXXXXXXXXXXXGMDAGQFVLGGGGGHIGPYAGGSVGYVYGGQINGMGQMVAGGVEXXXXXXXXXXXXXXXXXXXXXKEAKGKRKETKANEAGAKKFKRVAGGTSWEDVTLADWPENDYRLFVGDLGNEVTDEHLAGVFRKYASFAKARVIREKWNKKSKGYGFVSFVDGMDMLKALREQNGKYLGNRPMKISKSTWKERDAKEV 472
            MADED LFA+F+GEI S V             ED G ASD ASVG+++  D           DT +R+  TE +P   PA KKP+ MGKLVAAA P+KAG  +A +          T     SGP AR       A+K   DGS   AG G                        +G    GE    GG  +G    + G G                        S+D D  M+          GSGG+  Q  G       M +H+  SQM G     MPGNN    MG P  G  G NMGMMG    G    G+G                 MPP     XXXXXXXXXXX M           G  GPY  GS+GY YGG +NGM   + GG  XXXXXXXXXXXXXXXXXXXXX   K K  + KA  +   KFKRVAGG SWED TLA+WPENDYRLFVGDLGNEVTD++LAG FRKY SFAKA++IREKWNKKSKGYGFVSF+DGMDMLKALREQ GKYLGNRPMKISKSTWKERD KE+
Sbjct:    1 MADEDALFAEFMGEIKSTVVAAETKGAADAGEEDDGAASDAASVGDVKADDAEGGGEGRNHADTTKRRGETEASPS--PAPKKPRFMGKLVAAARPVKAGAVAAAS----------TARATGSGPKARTGDKGTAAAKKDPDGSGADAGTGGXXXXXXXXXXXXXXXXXXXXXXXSGKGGKGETTKTGGXXKGKKGVKNGSGTXXXXXXXXXXXXXXXXXXXXXXGSKD-DEEMVG-------FGGSGGVAKQQAG-------MDMHNNPSQMGGGGPGTMPGNNNGMHMGAPPPGMRG-NMGMMG---AGSGMAGFGXXXXXXXXXXXXXXXXXMPPGXXXXXXXXXXXXXXXXM-----------GGPGPYPDGSMGYGYGGPMNGM---MPGGXXXXXXXXXXXXXXXXXXXXXXXXXXKDKVAKAKAESSN--KFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKIIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEL 500          
BLAST of mRNA_A-nodosum_M_contig120.53.3 vs. uniprot
Match: A0A6H5KAJ6_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ6_9PHAE)

HSP 1 Score: 239 bits (611), Expect = 2.900e-69
Identity = 252/558 (45.16%), Postives = 291/558 (52.15%), Query Frame = 0
Query:    1 MADEDELFAQFLGEINSAV--------AEPVEDGGGASDTASVGEIEGGDTIAEDTARRKAST----ETTPLALPAAKKPKVMGKLVAAALPMKAGTASAVAPKPAAPRVEATKSLANSGPPARPASKVSKDGSAGYGTSGAVEVSPGAFVRPRKDGPVAVPAGNPAFGE-----------MHGNGGAPRGDSRRGGGESRDGDGRMLPEANGAHRTSGSGGMQGQHPGASQLRGHMGIHHSQMPGAMMPGNNGM--GMPTGGGMGMNMGMMG--DGIRGDYGGGY-----------GMPPVMNMGXXXXXXXXXXXGMDAGQFVLGGGGGHIGPYAGGSVGYVYGGQINGMGQMVAGG---------------------VEXXXXXXXXXXXXXXXXXXXXXKEAKG----------KRKETKANEAGAKKFKRVAGGTSWEDVTLADWPENDYRLFVGDLGNEVTDEHLAGVFRKYASFAKARVIREKWNKKSKGYGFVSFVDGMDMLKALREQNGKYLGNRPMKISKSTWKERDAKEVRKKNKKAKKVKKQLGML 489
            M+DED +FA+F+GEI S V        ++  ED G ASD ASVG+++   T     AR  A T    ET     PA KKP+ MGKLVAAA P+KAG  +A +      R   +   A++G     A+K   DGS   G S                     P    A G+                      S R   +  D +G    +        GSGG+  +H     +  +        PG M   NNGM  G P  G  G NMG+MG  +G+ G  G GY           GMPP     XXXXXXXXXXX             G  GPY  GS+GY YGG +N M  M  GG                       XXXXXXXXXXXXXXXXXX     A+G          K K  KA    + KFKRVAGG SWED TLA+WPENDYRLFVGDLGNEVTD++LAG FRKY SFAKA+VIREKWNKKSKGYGFVSF+DGMDMLKALREQ GKYLGNRPMKISKSTWKERD KEV+KK      VKK LG+L
Sbjct:    1 MSDEDAIFAEFMGEIKSTVVAAETKTASDAGEDDGAASDAASVGDVQADGTEGGGEARNHADTTKRRETEASPSPAPKKPRFMGKLVAAAPPVKAGAVAAASTA----RATGSGPKASTGDKGTAAAKKDPDGS---GASAXXXXXXXXXXXXXXXXXXTTPPLPDASGKGXXXXXXXXXXXXXXXXXXXXXSERTPADGGDANGAGSKDDEEMVGFGGSGGVA-KHEAGMDMHNNPSPMGGGGPGTMPGNNNGMHMGAPPPGIRG-NMGVMGAGNGMAGFGGDGYXXXXXXXXXXXGMPPGXXXXXXXXXXXXXXXXX-----------GGPGPYPDGSMGYGYGGPMNVM--MSGGGGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGSGAEGGXXXXXXXXXKDKVAKAKAESSNKFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXVKKALGLL 536          
BLAST of mRNA_A-nodosum_M_contig120.53.3 vs. uniprot
Match: A0A836CHC6_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC6_9STRA)

HSP 1 Score: 192 bits (488), Expect = 3.830e-53
Identity = 95/128 (74.22%), Postives = 109/128 (85.16%), Query Frame = 0
Query:  362 KKFKRVAGGTSWEDVTLADWPENDYRLFVGDLGNEVTDEHLAGVFRKYASFAKARVIREKWNKKSKGYGFVSFVDGMDMLKALREQNGKYLGNRPMKISKSTWKERDAKEVRKKNKKAKKVKKQLGML 489
            KKF RV GGT+W+D TL +WPEND+RLFVGDLGNEVTDE+LA  F  YASF KA+V+REK N KSKGYGFVSF DG DM++ALRE+NGKYLGNRPMKISKS+W ER+ KEVRKK KK K+ KK LG+L
Sbjct:  234 KKFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREKKALGLL 361          
BLAST of mRNA_A-nodosum_M_contig120.53.3 vs. uniprot
Match: A0A7S1XX46_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX46_9STRA)

HSP 1 Score: 167 bits (422), Expect = 3.170e-45
Identity = 81/123 (65.85%), Postives = 98/123 (79.67%), Query Frame = 0
Query:  366 RVAGGTSWEDVTLADWPENDYRLFVGDLGNEVTDEHLAGVFRKYASFAKARVIREKWNKKSKGYGFVSFVDGMDMLKALREQNGKYLGNRPMKISKSTWKERDAKEVRKKNKKAKKVKKQLGM 488
            R AGG +WED TL +WPEND+RLFVGDLG + T   L  +FRKY SFAKAR+ R++   K + YGFVSF+DGMDM+KALREQNGKY GNRPMK+SKSTWKERD  E+RKK++  KK  K+LG+
Sbjct:   96 RSAGGKTWEDKTLEEWPENDFRLFVGDLGADTTVPMLEQIFRKYPSFAKARICRDRARNKVRQYGFVSFLDGMDMMKALREQNGKYCGNRPMKLSKSTWKERDRSEIRKKDRAKKKFNKKLGV 218          
BLAST of mRNA_A-nodosum_M_contig120.53.3 vs. uniprot
Match: A0A7R9U4X3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4X3_9STRA)

HSP 1 Score: 158 bits (400), Expect = 1.030e-42
Identity = 75/127 (59.06%), Postives = 101/127 (79.53%), Query Frame = 0
Query:  362 KKFKRVAGGTSWEDVTLADWPENDYRLFVGDLGNEVTDEHLAGVFRKYASFAKARVIREKWNKKSKGYGFVSFVDGMDMLKALREQNGKYLGNRPMKISKSTWKERDAKEVRKKNKKAKKVKKQLGM 488
            KK+ R AGG +WED TLA+W END+RLFVGDLG +VT   L  +FR+Y SFAKA++ R++   K + +GFVSF+DGMD +KA+REQ GKY G RPMKI +STWK+RD +E++KK+K+ KK +K+LG+
Sbjct:   39 KKYMRSAGGQTWEDPTLAEWAENDFRLFVGDLGADVTVPMLESIFRQYQSFAKAKICRDRARNKVRQFGFVSFLDGMDCMKAMREQQGKYCGQRPMKIRRSTWKDRDVQELKKKDKRRKKFEKKLGL 165          
BLAST of mRNA_A-nodosum_M_contig120.53.3 vs. uniprot
Match: A0A7S3JN71_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JN71_9STRA)

HSP 1 Score: 157 bits (397), Expect = 4.730e-42
Identity = 79/123 (64.23%), Postives = 94/123 (76.42%), Query Frame = 0
Query:  366 RVAGGTSWEDVTLADWPENDYRLFVGDLGNEVTDEHLAGVFRKYASFAKARVIREKWNKKSKGYGFVSFVDGMDMLKALREQNGKYLGNRPMKISKSTWKERDAKEVRKKNKKAKKVKKQLGM 488
            R AGG +W D +L  WPEND+RLFVG+LGNEVTDE ++  F  YAS AKA+VIREK++ KSKGYGFVSF+D  D  KALRE NGKY+GNRP K+ +S WK+R  KEVRKK KK  K KK  G+
Sbjct:   59 RHAGGKTWRDDSLDLWPENDFRLFVGNLGNEVTDEIVSHAFASYASLAKAKVIREKFSNKSKGYGFVSFLDPYDCAKALREMNGKYIGNRPCKLQRSNWKDRTLKEVRKKEKKDSKTKKSWGI 181          
BLAST of mRNA_A-nodosum_M_contig120.53.3 vs. uniprot
Match: A0A6G0XJI1_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJI1_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.060e-41
Identity = 77/119 (64.71%), Postives = 94/119 (78.99%), Query Frame = 0
Query:  362 KKFKRVAGGTSWEDVTLADWPENDYRLFVGDLGNEVTDEHLAGVFRKYASFAKARVIREKWNKKSKGYGFVSFVDGMDMLKALREQNGKYLGNRPMKISKSTWKERDAKEVRKKNKKAK 480
            KKF R A G  WED TL +WPENDYRLF GDLGNEV D+ L+  F +Y+SFA ARVIR+K   KSKGYGFVSF+DG+D +KA+RE NGKY+G+RP+KI+K  W+ER  + V+KKNKK K
Sbjct:  160 KKFLRAAAGKVWEDSTLCEWPENDYRLFCGDLGNEVNDDLLSQAFSQYSSFAMARVIRDKITHKSKGYGFVSFMDGLDAMKAMREMNGKYIGSRPVKITKGKWQERSLEVVKKKNKKNK 278          
BLAST of mRNA_A-nodosum_M_contig120.53.3 vs. uniprot
Match: A0A4D9D1U7_9STRA (RRM domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1U7_9STRA)

HSP 1 Score: 160 bits (405), Expect = 2.930e-41
Identity = 80/128 (62.50%), Postives = 99/128 (77.34%), Query Frame = 0
Query:  362 KKFKRVAGGTSWEDVTLADWPENDYRLFVGDLGNEVTDEHLAGVFR-KYASFAKARVIREKWNKKSKGYGFVSFVDGMDMLKALREQNGKYLGNRPMKISKSTWKERDAKEVRKKNKKAKKVKKQLGM 488
            KKF R+  G +WED TL +WPEND+R+F GDLG EVTDEHL   FR KY SFAKA+V+R++   KS+GYGFVSF+D ++ LKALRE NGKY+G+RP+K+ K  WKERD KEVRKK K  KK   +LG+
Sbjct:  220 KKFIRIGPGQTWEDPTLNEWPENDFRIFCGDLGPEVTDEHLTNAFRGKYPSFAKAKVLRDRGTGKSRGYGFVSFLDPLEGLKALREMNGKYVGSRPVKLRKCDWKERDLKEVRKKEKTKKKFLSKLGL 347          
BLAST of mRNA_A-nodosum_M_contig120.53.3 vs. uniprot
Match: A0A8K1FSY6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FSY6_PYTOL)

HSP 1 Score: 158 bits (400), Expect = 4.580e-41
Identity = 77/119 (64.71%), Postives = 93/119 (78.15%), Query Frame = 0
Query:  362 KKFKRVAGGTSWEDVTLADWPENDYRLFVGDLGNEVTDEHLAGVFRKYASFAKARVIREKWNKKSKGYGFVSFVDGMDMLKALREQNGKYLGNRPMKISKSTWKERDAKEVRKKNKKAK 480
            KK  R+AGG  WED TLADWP+ND+RLFVGDLGNEV DE LA  F +YASF +ARV+R+K+  K++GYGFVSF D MD  KA+RE NGKY+GNRP+KI KS W++R+    RKK KK K
Sbjct:  176 KKNLRMAGGEIWEDATLADWPDNDFRLFVGDLGNEVNDEILAHAFSRYASFQRARVVRDKYTHKTRGYGFVSFGDHMDCAKAMREMNGKYIGNRPVKIQKSNWQDRNIDVARKKAKKKK 294          
BLAST of mRNA_A-nodosum_M_contig120.53.3 vs. uniprot
Match: A0A7S2RJZ2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJZ2_9STRA)

HSP 1 Score: 157 bits (398), Expect = 8.900e-41
Identity = 74/113 (65.49%), Postives = 89/113 (78.76%), Query Frame = 0
Query:  362 KKFKRVAGGTSWEDVTLADWPENDYRLFVGDLGNEVTDEHLAGVFRKYASFAKARVIREKWNKKSKGYGFVSFVDGMDMLKALREQNGKYLGNRPMKISKSTWKERDAKEVRK 474
            KK  R A G  W D TL +WPEND+RLFVGD+GNEVTD+ L+  F KYASFAKA+V+R+K+  KSKGYGF SF+D  D  KALRE NGKY+GNRP+K+ KS W+ERD KEV+K
Sbjct:  172 KKQVRTAAGQVWVDKTLDEWPENDFRLFVGDIGNEVTDDLLSRAFAKYASFAKAKVVRDKYTNKSKGYGFASFIDPFDCAKALREMNGKYIGNRPIKLRKSEWRERDIKEVKK 284          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig120.53.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJT5_ECTSI1.510e-7147.35Temporarily Assigned Gene name family member (Tag-... [more]
A0A6H5KAJ6_9PHAE2.900e-6945.16RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CHC6_9STRA3.830e-5374.22RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S1XX46_9STRA3.170e-4565.85Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9U4X3_9STRA1.030e-4259.06Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3JN71_9STRA4.730e-4264.23Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A6G0XJI1_9STRA1.060e-4164.71RRM domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A4D9D1U7_9STRA2.930e-4162.50RRM domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A8K1FSY6_PYTOL4.580e-4164.71Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2RJZ2_9STRA8.900e-4165.49Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 387..460
e-value: 1.0E-16
score: 71.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 388..457
e-value: 3.6E-15
score: 55.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 386..464
score: 15.817916
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 330..483
e-value: 3.8E-20
score: 74.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..228
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 171..186
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..60
NoneNo IPR availablePANTHERPTHR47640TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATEDcoord: 343..484
NoneNo IPR availablePANTHERPTHR47640:SF11RNA-BINDING PROTEIN 42-LIKEcoord: 343..484
IPR034215RBM42, RNA recognition motifCDDcd12383RRM_RBM42coord: 380..462
e-value: 1.32168E-46
score: 154.688
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 372..466

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig120contigA-nodosum_M_contig120:753543..775335 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig120.53.3mRNA_A-nodosum_M_contig120.53.3Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig120 753470..776044 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig120.53.3 ID=prot_A-nodosum_M_contig120.53.3|Name=mRNA_A-nodosum_M_contig120.53.3|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=490bp
MADEDELFAQFLGEINSAVAEPVEDGGGASDTASVGEIEGGDTIAEDTAR
RKASTETTPLALPAAKKPKVMGKLVAAALPMKAGTASAVAPKPAAPRVEA
TKSLANSGPPARPASKVSKDGSAGYGTSGAVEVSPGAFVRPRKDGPVAVP
AGNPAFGEMHGNGGAPRGDSRRGGGESRDGDGRMLPEANGAHRTSGSGGM
QGQHPGASQLRGHMGIHHSQMPGAMMPGNNGMGMPTGGGMGMNMGMMGDG
IRGDYGGGYGMPPVMNMGMGMGMGMGMAPGMDAGQFVLGGGGGHIGPYAG
GSVGYVYGGQINGMGQMVAGGVEGGTAAAMGAAAAAAEEGAETGKEAKGK
RKETKANEAGAKKFKRVAGGTSWEDVTLADWPENDYRLFVGDLGNEVTDE
HLAGVFRKYASFAKARVIREKWNKKSKGYGFVSFVDGMDMLKALREQNGK
YLGNRPMKISKSTWKERDAKEVRKKNKKAKKVKKQLGML*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR034215RBM42_RRM
IPR035979RBD_domain_sf