prot_A-nodosum_M_contig12.113.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig12.113.1
Unique Nameprot_A-nodosum_M_contig12.113.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length373
Homology
BLAST of mRNA_A-nodosum_M_contig12.113.1 vs. uniprot
Match: D7FJF4_ECTSI (Signal recognition particle receptor subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJF4_ECTSI)

HSP 1 Score: 325 bits (833), Expect = 3.300e-106
Identity = 189/309 (61.17%), Postives = 222/309 (71.84%), Query Frame = 0
Query:   82 TDGGGQAFENAGNTLG---QVLAS-ADGNAAAMSIVESFLASINALLAEYGMPSASVLCAALAVPILAFALVGKFGIGGGRNARGGLASNRRKGVVLFLGPCGSGKTAMCYRLS---KDVFAPTVTSMQACTYDCK--KLTP----------SSKLSASLIDYPGHERLRGGVREELQRADRLVFVLDGSCLSAQIAAGAELLYDVLTDTSVEGCRGLLLALNKSDLREAKASRAKVLLQKEIEKLRLTRGTLGAQGEEDDMPATMTLGRPGQPFSLEVDSPCEVAIATCSVMKEGGLGPIEDFIRASV 371
            + G G A    G   G   Q LAS +D  AA +S +ES LAS+ + LAEYG+PSAS++   +A+ I    L+GK GI             +RKGVVLFLGPCGSGKTAMCYRLS   +    PT TSM+AC Y C   +L+           SS  S SL+DYPGHERLRGGV EEL+ ADR+VF+LDGSCL+AQ+AAGAELLYDVLTD S+EGC+GL+LALNKSDL+EAKASRAK LLQKE++KLR TRG LG QGEEDDMP  M LGRPGQPFSLEVDSPCEV +A CSV KEGGL  + DF+RAS+
Sbjct:   53 SSGSGAAEPGEGEIAGVVAQALASNSDKAAAVLSQLESLLASLESFLAEYGLPSASLVFPGVAIAIFLLVLLGKVGI---XXXXXXXXXXKRKGVVLFLGPCGSGKTAMCYRLSHGGETGLVPTATSMEACRYPCSSGRLSELLARNGNGPSSSARSGSLVDYPGHERLRGGVGEELRGADRVVFMLDGSCLAAQVAAGAELLYDVLTDPSLEGCQGLMLALNKSDLKEAKASRAKTLLQKELDKLRGTRGMLGTQGEEDDMPVAMALGRPGQPFSLEVDSPCEVVVAGCSVAKEGGLDSVVDFVRASL 358          
BLAST of mRNA_A-nodosum_M_contig12.113.1 vs. uniprot
Match: A0A835YTM3_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTM3_9STRA)

HSP 1 Score: 150 bits (378), Expect = 2.190e-40
Identity = 78/155 (50.32%), Postives = 108/155 (69.68%), Query Frame = 0
Query:  215 SSKLSASLIDYPGHERLRGGVREELQRADRLVFVLDGSCLSAQIAAGAELLYDVLTDTSVEGCRGLLLALNKSDLREAKASRAKVLLQKEIEKLRLTRGTLGAQGEEDD--MPATMTLGRPGQPFSLEVDSPCEVAIATCSVMKEGGLGPIEDFI 367
            SSK S ++ D+PGHERLRGG+R EL  +  ++F+LDG+ LS+Q+  G E+LYD+LTD+S+E C+GL +  +K+DL+ AK  R +  L KE+E+LR TR ++G QGEED     + + LGR GQP  L VD PC + + TCSV  EG L  + DFI
Sbjct:   20 SSKGSVTVTDFPGHERLRGGLRGELATSTAVIFMLDGTDLSSQVRLGGEMLYDILTDSSIERCKGLAIGCSKADLKVAKPDRVRAALTKELEQLRTTRWSIGMQGEEDTGRPNSFIPLGRQGQPLDLVVDCPCPLTVFTCSVKGEG-LNAVRDFI 173          
BLAST of mRNA_A-nodosum_M_contig12.113.1 vs. uniprot
Match: A0A485KDV8_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDV8_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.200e-29
Identity = 85/219 (38.81%), Postives = 127/219 (57.99%), Query Frame = 0
Query:  160 ARGGLASNRRKGVVLFLGPCGSGKTAMCYRLSKDVFAPT---VTSMQACTYDCKKLTPSSKLSASLIDYPGHERLRGGVREELQRADRLVFVLDGSCLS--AQIAAGAELLYDVLT-----DTSVEGCRGLLLALNKSDLREAKA-SRAKVLLQKEIEKLRLTRGTLGAQGEEDDMPATMTLGRPGQPFSLEVDSPCEVAIATCSVMKEGGLGPIEDFI 367
            A  G     ++ V+L +GPCG GKTA+ +RL +D  +PT   VTSM+  T +   L      + S++D+PGHERLR  V +    A +LVFV+D + +S  AQ+   AE L+DV T     DT++     +L+A +KSDL  A A  R + LL+ E+ +L+ TR +L A  +++ +P    LGR   PF+ +VD+PCEV   T S+     + P+ DFI
Sbjct:   32 AASGSGPGGKRDVILLVGPCGGGKTALFHRL-RDGPSPTLETVTSMKE-TLESFPLFDEDSANVSVLDFPGHERLRSQVSQFYPIAKKLVFVVDSTTVSDPAQVRKAAEFLFDVFTHPKLNDTAIP----VLIACSKSDLTTAAAPGRIQSLLEAELTQLKSTRASLEAHDDDESIP----LGRDNVPFAFDVDAPCEVVFETYSIHSAEAIAPLLDFI 240          
BLAST of mRNA_A-nodosum_M_contig12.113.1 vs. uniprot
Match: A0A6G0XMT9_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XMT9_9STRA)

HSP 1 Score: 121 bits (303), Expect = 1.200e-28
Identity = 78/213 (36.62%), Postives = 123/213 (57.75%), Query Frame = 0
Query:  160 ARGGLASNRRKGVVLFLGPCGSGKTAMCYRLSKD-VFAPTVTSMQACTYDCKKLTPSSKLSASLIDYPGHERLRGGVREELQRADRLVFVLDGSCLS--AQIAAGAELLYDVLTDTSV-EGCRGLLLALNKSDLREAKA-SRAKVLLQKEIEKLRLTRGTLGAQGEEDDMPATMTLGRPGQPFSLEVDSPCEVAIATCSVMKEGGLGPIEDFI 367
            A  G     ++ V+L LGPCGSGKTA+ +RL    V   TVTSM+  T +   L      + S++D+PGHERLR    +    A ++VF++D + +S   Q+   AE L+D+ T   + +    +L+A +K+D   A A SR ++LL+ E+ +L+ TR +L  Q +++ +P    LGR   PF+ +VD+PCEV   + S+    G+ P+ DFI
Sbjct:   32 AASGSGPRGKRDVILLLGPCGSGKTALFHRLRDGAVSVETVTSMKE-TMETFPLHDEETANVSVLDFPGHERLRSQAPQFYPIAKKIVFIVDATTVSDPLQVRKAAEFLFDIFTHPKLNDNGIPVLIACSKADQATAAAPSRIQLLLEAELTQLKGTRASLDTQDDDESIP----LGRENVPFAFDVDAPCEVVFESYSIHTPNGVAPLLDFI 239          
BLAST of mRNA_A-nodosum_M_contig12.113.1 vs. uniprot
Match: A0A024TLZ7_9STRA (Signal recognition particle receptor subunit beta n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024TLZ7_9STRA)

HSP 1 Score: 117 bits (294), Expect = 2.380e-27
Identity = 78/213 (36.62%), Postives = 120/213 (56.34%), Query Frame = 0
Query:  160 ARGGLASNRRKGVVLFLGPCGSGKTAMCYRLSKDVF-APTVTSMQACTYDCKKLTPSSKLSASLIDYPGHERLRGGVREELQRADRLVFVLDGSCL--SAQIAAGAELLYDVLTDTSV-EGCRGLLLALNKSDLREAKA-SRAKVLLQKEIEKLRLTRGTLGAQGEEDDMPATMTLGRPGQPFSLEVDSPCEVAIATCSVMKEGGLGPIEDFI 367
            A  G +   ++ V+L LGPCG GKTA+ +RL        TVTSM+  T +   L      + S++D+PGHERLR  V +    A +LVFV+D + +  +AQ+   AE LYD+     V +    LL+A +K+D+  A   S  + LL+ E+ +L+ TR +L A  +++ +P    LGR   PF+ +VD+PCEV   + S+     + P+ DFI
Sbjct:   32 AASGSSPGGKRDVILLLGPCGGGKTALFHRLRDGPSKVDTVTSMKE-TLETFPLFDEEAATVSVLDFPGHERLRSQVSQFYPIAKKLVFVVDATTVGDAAQVRKAAEFLYDIFVHPKVHDNGIPLLVACSKADVATAATPSHIQSLLETELSQLKSTRASLEAHDDDESIP----LGRENVPFAFDVDAPCEVVFESYSIHSAEAIAPLLDFI 239          
BLAST of mRNA_A-nodosum_M_contig12.113.1 vs. uniprot
Match: W7U264_9STRA (Signal recognition particle receptor subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U264_9STRA)

HSP 1 Score: 116 bits (291), Expect = 4.220e-26
Identity = 83/226 (36.73%), Postives = 128/226 (56.64%), Query Frame = 0
Query:  153 GIGGGRNAR---GGLASNRRKGVVLFLGPCGSGKTAMCYRLSKDVFAPTVTSMQACTYDCKKLTPSSKLSASLIDYPGHERLRGGVREELQRADRL---VFVLDGSCLSA-QIAAGAELLYDVLTDTSVEGCRGLLLALNKSDLREAKA-SRAKVLLQKEIEKLRLTRGTLGAQGEEDDMPATMTLGRPGQPFSLEVDSPCEVAIATCSVMKE---GGLGPIEDFI 367
            GIG  R  +   GG     R   V+ LGPCG+GKTA+ ++L  +    TVTSM     + + +     +   L+D+PGHERLRGG +++   A ++   +FV+D +  S  ++   AE LYD+LT  +++    LL+A +KSDL  AKA +R K LL  E+E+LR T+G     G  ++    + LGR   P +L+VD+P E+  A+ +V ++   GG   IE+ I
Sbjct:  100 GIGRARGHKPLPGGKQGRARPSHVVLLGPCGAGKTALYHQLLYNTVPETVTSM----VESEGILKDKDIR--LVDFPGHERLRGGWKKQFLDAGKVAGVIFVVDAADFSTHKVREAAEFLYDILTHAAMDDGPPLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEEDRLPLGRVAVPLNLDVDAPSELTFASTNVAQQTQFGGNDAIEEDI 319          
BLAST of mRNA_A-nodosum_M_contig12.113.1 vs. uniprot
Match: A0A1V9ZHQ0_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZHQ0_9STRA)

HSP 1 Score: 114 bits (284), Expect = 6.620e-26
Identity = 73/210 (34.76%), Postives = 120/210 (57.14%), Query Frame = 0
Query:  163 GLASNRRKGVVLFLGPCGSGKTAMCYRLSKD-VFAPTVTSMQACTYDCKKLTPSSKLSASLIDYPGHERLRGGVREELQRADRLVFVLDGSCLS--AQIAAGAELLYDVLTDTSVEGCR-GLLLALNKSD-LREAKASRAKVLLQKEIEKLRLTRGTLGAQGEEDDMPATMTLGRPGQPFSLEVDSPCEVAIATCSVMKEGGLGPIEDFI 367
            G+ S++R  +VL +GPCG+GKTA+ +RL        TVTSM+  T +   L      + ++ D+PGHER+R    +    A +++FV+D +  +    I   AE LYD+ T   V      +++A +KSD  + A ++  + LL+ E+ +L+ TR +L A GE+D+   ++ LGR   PF+ ++D+PCEV     S++    L P+ DFI
Sbjct:   36 GIRSSKRD-IVLLVGPCGAGKTALFHRLRDGPTKVTTVTSMKE-TMEKFPLFDEENATFNICDFPGHERMRSQAGQFYPIAKKIIFVVDSTTANDAGHIRKAAEFLYDIFTHPKVNDAGVPVMIACSKSDETKAATSATVRSLLESELTQLKSTRASLEAHGEDDE---SIPLGRDNAPFAFDIDAPCEVTFENYSIVTPEALNPLLDFI 240          
BLAST of mRNA_A-nodosum_M_contig12.113.1 vs. uniprot
Match: A0A7S2DSR0_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DSR0_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.580e-25
Identity = 72/198 (36.36%), Postives = 110/198 (55.56%), Query Frame = 0
Query:  173 VLFLGPCGSGKTAMCYRLSKDVFAPTVTSMQACTYDCKKLTPSSKLSASLIDYPGHERLRGGVREELQRADRLVFVLDGSCLSAQIAAGAELLYDVLTDTSVEGCRGLLLALNKSDLREAK-ASRAKVLLQKEIEKLRLTRGTLGAQGEEDDMPATMTLGRPGQPFSLEVDSPCEVAIATCSVMKEGGLGPIEDFIRA 369
            VL +GPCG+GKT +  +L     A TVTSM     +C   +  +    ++ID+PGH R R  +  +L  A  +V V+D S  S Q+   ++LL+ VLT   +     +L+  NK D+  +K A R KVLLQKE+E +R TRG++  +GE+    + M LG+ G+PF  + D P     +  ++  EGGL  +  F+ A
Sbjct:    7 VLLIGPCGAGKTVIFQQLCYGGVAETVTSMSPAHSECTMGSKDAPKKINVIDFPGHMRQRPALLGQLSGAKGVVVVVDSSN-SKQVKEASDLLFSVLTAPLLPHSTSVLVFCNKMDVEGSKSADRVKVLLQKELETMRNTRGSMSQEGEDGSKGSRM-LGQEGRPFRFDHDMPNITFASGTALAGEGGLSELTTFLTA 202          
BLAST of mRNA_A-nodosum_M_contig12.113.1 vs. uniprot
Match: A0A067D7V6_SAPPC (Signal recognition particle receptor subunit beta n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D7V6_SAPPC)

HSP 1 Score: 105 bits (262), Expect = 9.000e-23
Identity = 66/201 (32.84%), Postives = 107/201 (53.23%), Query Frame = 0
Query:  172 VVLFLGPCGSGKTAMCYRLSKD-VFAPTVTSMQACTYDCKKLTPSSKLSASLIDYPGHERLRGGVREELQRADRLVFVLDGSCLS--AQIAAGAELLYDVLTDTSVE--GCRGLLLALNKSDLREAKASRAKVLLQKEIEKLRLTRGTLGAQGEEDDMPATMTLGRPGQPFSLEVDSPCEVAIATCSVMKEGGLGPIEDFI 367
            VVL +GPCG+GKTA+ +RL        TVTSM+  T +   L      + S+ D+PGHER+R    +    A +++FV+D +  +  + I   AE LYD+ T   +   G   ++      D++ A  +  + LL+ E+ +L+ TR +L A G++D+   ++ LGR    F   +D+PC+V     S+     L P+ DFI
Sbjct:   44 VVLLVGPCGAGKTALFHRLRNGPTKVETVTSMKE-TMETFPLFDEENATISICDFPGHERMRSTATQFYPIAKKIIFVVDATTANDASHIRKAAEFLYDIFTHPKINDAGVPVMIACSKTDDVKAATPATVQSLLETELTQLKSTRASLEAHGDDDE---SIPLGRDNALFEFAIDAPCDVTFEGYSIQTPDALNPLLDFI 240          
BLAST of mRNA_A-nodosum_M_contig12.113.1 vs. uniprot
Match: A0A662WHK7_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WHK7_9STRA)

HSP 1 Score: 103 bits (258), Expect = 4.740e-22
Identity = 73/211 (34.60%), Postives = 114/211 (54.03%), Query Frame = 0
Query:  166 SNRRKGVVLFLGPCGSGKTAMCYRLSKDVFAPTVTSMQACTYDCK---KLTPSSKLSASL--IDYPGHERLRGGVREELQRADRLVFVLDGSCLSAQIAAGAELLYDVLTDTSVEGCRG-LLLALNKSDLREAKASRA-KVLLQKEIEKLRLTRGTLGAQGEEDDMPATMT-LGRPGQPFSLEVDSPCEVAIATCSVMKEGGLGPIEDFIR 368
            + ++  + L LGP  +GKT   + +    +  TV+SM+  T+      K  P+ K  A L  +DYPGHERLR  V +    A  +VF +D S  +      AE LYD+  +  V      +L+A NKSD   A + +A +  L+KE+ +L+ TR +L  +G++D+   +   +GR G PF  +VDSPCE++   CSV K G +  +  FI+
Sbjct:   51 TGKKNKMALLLGPRHAGKTQFFHAIRDGEYVDTVSSMKEQTFRFMVHPKYNPA-KFDAELTVVDYPGHERLRSRVPDFYPVAGCIVFFVDASD-APSFRKAAEFLYDIFANKKVNDLTPPILVACNKSDAAGAASPQAVRDALEKELTQLKKTRSSLETEGDDDEQDLSQVPVGRDGSPFQFDVDSPCEISFTKCSV-KSGSINEVVTFIQ 258          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig12.113.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJF4_ECTSI3.300e-10661.17Signal recognition particle receptor subunit beta ... [more]
A0A835YTM3_9STRA2.190e-4050.32Signal recognition particle receptor subunit beta ... [more]
A0A485KDV8_9STRA1.200e-2938.81Signal recognition particle receptor subunit beta ... [more]
A0A6G0XMT9_9STRA1.200e-2836.62Signal recognition particle receptor subunit beta ... [more]
A0A024TLZ7_9STRA2.380e-2736.62Signal recognition particle receptor subunit beta ... [more]
W7U264_9STRA4.220e-2636.73Signal recognition particle receptor subunit beta ... [more]
A0A1V9ZHQ0_9STRA6.620e-2634.76Signal recognition particle receptor subunit beta ... [more]
A0A7S2DSR0_9STRA2.580e-2536.36Signal recognition particle receptor subunit beta ... [more]
A0A067D7V6_SAPPC9.000e-2332.84Signal recognition particle receptor subunit beta ... [more]
A0A662WHK7_9STRA4.740e-2234.60Signal recognition particle receptor subunit beta ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019009Signal recognition particle receptor, beta subunitPFAMPF09439SRPRBcoord: 170..338
e-value: 7.4E-28
score: 97.2
IPR019009Signal recognition particle receptor, beta subunitPANTHERPTHR11485:SF34SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT BETAcoord: 125..368
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 165..369
e-value: 9.8E-42
score: 144.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 173..313
NoneNo IPR availablePANTHERPTHR11485TRANSFERRINcoord: 125..368

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig12contigA-nodosum_M_contig12:1571750..1572868 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig12.113.1mRNA_A-nodosum_M_contig12.113.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig12 1571379..1572906 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig12.113.1 ID=prot_A-nodosum_M_contig12.113.1|Name=mRNA_A-nodosum_M_contig12.113.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=373bp
MLETTVVLVTPARKNRGKGGIANKTSSWIFPVAITLASSSLAFAVTSTAI
DQTDVEGSNSSSVGGDIDTHNSAISNAEISVTDGGGQAFENAGNTLGQVL
ASADGNAAAMSIVESFLASINALLAEYGMPSASVLCAALAVPILAFALVG
KFGIGGGRNARGGLASNRRKGVVLFLGPCGSGKTAMCYRLSKDVFAPTVT
SMQACTYDCKKLTPSSKLSASLIDYPGHERLRGGVREELQRADRLVFVLD
GSCLSAQIAAGAELLYDVLTDTSVEGCRGLLLALNKSDLREAKASRAKVL
LQKEIEKLRLTRGTLGAQGEEDDMPATMTLGRPGQPFSLEVDSPCEVAIA
TCSVMKEGGLGPIEDFIRASVR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019009SRP_receptor_beta_su
IPR027417P-loop_NTPase