mRNA_A-nodosum_M_contig12.113.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig12.113.1
Unique NamemRNA_A-nodosum_M_contig12.113.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig12.113.1 vs. uniprot
Match: D7FJF4_ECTSI (Signal recognition particle receptor subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJF4_ECTSI)

HSP 1 Score: 325 bits (832), Expect = 4.080e-104
Identity = 189/309 (61.17%), Postives = 222/309 (71.84%), Query Frame = 3 
Query:  282 TDGGGQAFENAGNTLG---QVLAS-ADGNAAAMSIVESFLASINALLAEYGMPSASVLCAALAVPILAFALVGKFGIGGGRNARGGLASNRRKGVVLFLGPCGSGKTAMCYRLS---KDVFAPTVTSMQACTYDCK--KLTP----------SSKLSASLIDYPGHERLRGGVREELQRADRLVFVLDGSCLSAQIAAGAELLYDVLTDTSVEGCRGLLLALNKSDLREAKASRAKVLLQKEIEKLRLTRGTLGAQGEEDDMPATMTLGRPGQPFSLEVDSPCEVAIATCSVMKEGGLGPIEDFIRASV 1151
            + G G A    G   G   Q LAS +D  AA +S +ES LAS+ + LAEYG+PSAS++   +A+ I    L+GK GI             +RKGVVLFLGPCGSGKTAMCYRLS   +    PT TSM+AC Y C   +L+           SS  S SL+DYPGHERLRGGV EEL+ ADR+VF+LDGSCL+AQ+AAGAELLYDVLTD S+EGC+GL+LALNKSDL+EAKASRAK LLQKE++KLR TRG LG QGEEDDMP  M LGRPGQPFSLEVDSPCEV +A CSV KEGGL  + DF+RAS+
Sbjct:   53 SSGSGAAEPGEGEIAGVVAQALASNSDKAAAVLSQLESLLASLESFLAEYGLPSASLVFPGVAIAIFLLVLLGKVGI---XXXXXXXXXXKRKGVVLFLGPCGSGKTAMCYRLSHGGETGLVPTATSMEACRYPCSSGRLSELLARNGNGPSSSARSGSLVDYPGHERLRGGVGEELRGADRVVFMLDGSCLAAQVAAGAELLYDVLTDPSLEGCQGLMLALNKSDLKEAKASRAKTLLQKELDKLRGTRGMLGTQGEEDDMPVAMALGRPGQPFSLEVDSPCEVVVAGCSVAKEGGLDSVVDFVRASL 358
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BLAST of mRNA_A-nodosum_M_contig12.113.1 vs. uniprot
Match: A0A835YTM3_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTM3_9STRA)

HSP 1 Score: 149 bits (377), Expect = 4.380e-39
Identity = 78/155 (50.32%), Postives = 108/155 (69.68%), Query Frame = 3 
Query:  681 SSKLSASLIDYPGHERLRGGVREELQRADRLVFVLDGSCLSAQIAAGAELLYDVLTDTSVEGCRGLLLALNKSDLREAKASRAKVLLQKEIEKLRLTRGTLGAQGEEDD--MPATMTLGRPGQPFSLEVDSPCEVAIATCSVMKEGGLGPIEDFI 1139
            SSK S ++ D+PGHERLRGG+R EL  +  ++F+LDG+ LS+Q+  G E+LYD+LTD+S+E C+GL +  +K+DL+ AK  R +  L KE+E+LR TR ++G QGEED     + + LGR GQP  L VD PC + + TCSV  EG L  + DFI
Sbjct:   20 SSKGSVTVTDFPGHERLRGGLRGELATSTAVIFMLDGTDLSSQVRLGGEMLYDILTDSSIERCKGLAIGCSKADLKVAKPDRVRAALTKELEQLRTTRWSIGMQGEEDTGRPNSFIPLGRQGQPLDLVVDCPCPLTVFTCSVKGEG-LNAVRDFI 173
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BLAST of mRNA_A-nodosum_M_contig12.113.1 vs. uniprot
Match: A0A485KDV8_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDV8_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.250e-28
Identity = 85/219 (38.81%), Postives = 127/219 (57.99%), Query Frame = 3 
Query:  516 ARGGLASNRRKGVVLFLGPCGSGKTAMCYRLSKDVFAPT---VTSMQACTYDCKKLTPSSKLSASLIDYPGHERLRGGVREELQRADRLVFVLDGSCLS--AQIAAGAELLYDVLT-----DTSVEGCRGLLLALNKSDLREAKA-SRAKVLLQKEIEKLRLTRGTLGAQGEEDDMPATMTLGRPGQPFSLEVDSPCEVAIATCSVMKEGGLGPIEDFI 1139
            A  G     ++ V+L +GPCG GKTA+ +RL +D  +PT   VTSM+  T +   L      + S++D+PGHERLR  V +    A +LVFV+D + +S  AQ+   AE L+DV T     DT++     +L+A +KSDL  A A  R + LL+ E+ +L+ TR +L A  +++ +P    LGR   PF+ +VD+PCEV   T S+     + P+ DFI
Sbjct:   32 AASGSGPGGKRDVILLVGPCGGGKTALFHRL-RDGPSPTLETVTSMKE-TLESFPLFDEDSANVSVLDFPGHERLRSQVSQFYPIAKKLVFVVDSTTVSDPAQVRKAAEFLFDVFTHPKLNDTAIP----VLIACSKSDLTTAAAPGRIQSLLEAELTQLKSTRASLEAHDDDESIP----LGRDNVPFAFDVDAPCEVVFETYSIHSAEAIAPLLDFI 240
[Close]
BLAST of mRNA_A-nodosum_M_contig12.113.1 vs. uniprot
Match: A0A6G0XMT9_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XMT9_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.160e-27
Identity = 78/213 (36.62%), Postives = 123/213 (57.75%), Query Frame = 3 
Query:  516 ARGGLASNRRKGVVLFLGPCGSGKTAMCYRLSKD-VFAPTVTSMQACTYDCKKLTPSSKLSASLIDYPGHERLRGGVREELQRADRLVFVLDGSCLS--AQIAAGAELLYDVLTDTSV-EGCRGLLLALNKSDLREAKA-SRAKVLLQKEIEKLRLTRGTLGAQGEEDDMPATMTLGRPGQPFSLEVDSPCEVAIATCSVMKEGGLGPIEDFI 1139
            A  G     ++ V+L LGPCGSGKTA+ +RL    V   TVTSM+  T +   L      + S++D+PGHERLR    +    A ++VF++D + +S   Q+   AE L+D+ T   + +    +L+A +K+D   A A SR ++LL+ E+ +L+ TR +L  Q +++ +P    LGR   PF+ +VD+PCEV   + S+    G+ P+ DFI
Sbjct:   32 AASGSGPRGKRDVILLLGPCGSGKTALFHRLRDGAVSVETVTSMKE-TMETFPLHDEETANVSVLDFPGHERLRSQAPQFYPIAKKIVFIVDATTVSDPLQVRKAAEFLFDIFTHPKLNDNGIPVLIACSKADQATAAAPSRIQLLLEAELTQLKGTRASLDTQDDDESIP----LGRENVPFAFDVDAPCEVVFESYSIHTPNGVAPLLDFI 239
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BLAST of mRNA_A-nodosum_M_contig12.113.1 vs. uniprot
Match: A0A024TLZ7_9STRA (Signal recognition particle receptor subunit beta n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024TLZ7_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.070e-26
Identity = 78/213 (36.62%), Postives = 120/213 (56.34%), Query Frame = 3 
Query:  516 ARGGLASNRRKGVVLFLGPCGSGKTAMCYRLSKDVF-APTVTSMQACTYDCKKLTPSSKLSASLIDYPGHERLRGGVREELQRADRLVFVLDGSCL--SAQIAAGAELLYDVLTDTSV-EGCRGLLLALNKSDLREAKA-SRAKVLLQKEIEKLRLTRGTLGAQGEEDDMPATMTLGRPGQPFSLEVDSPCEVAIATCSVMKEGGLGPIEDFI 1139
            A  G +   ++ V+L LGPCG GKTA+ +RL        TVTSM+  T +   L      + S++D+PGHERLR  V +    A +LVFV+D + +  +AQ+   AE LYD+     V +    LL+A +K+D+  A   S  + LL+ E+ +L+ TR +L A  +++ +P    LGR   PF+ +VD+PCEV   + S+     + P+ DFI
Sbjct:   32 AASGSSPGGKRDVILLLGPCGGGKTALFHRLRDGPSKVDTVTSMKE-TLETFPLFDEEAATVSVLDFPGHERLRSQVSQFYPIAKKLVFVVDATTVGDAAQVRKAAEFLYDIFVHPKVHDNGIPLLVACSKADVATAATPSHIQSLLETELSQLKSTRASLEAHDDDESIP----LGRENVPFAFDVDAPCEVVFESYSIHSAEAIAPLLDFI 239
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BLAST of mRNA_A-nodosum_M_contig12.113.1 vs. uniprot
Match: W7U264_9STRA (Signal recognition particle receptor subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U264_9STRA)

HSP 1 Score: 116 bits (290), Expect = 3.580e-25
Identity = 83/226 (36.73%), Postives = 128/226 (56.64%), Query Frame = 3 
Query:  495 GIGGGRNAR---GGLASNRRKGVVLFLGPCGSGKTAMCYRLSKDVFAPTVTSMQACTYDCKKLTPSSKLSASLIDYPGHERLRGGVREELQRADRL---VFVLDGSCLSA-QIAAGAELLYDVLTDTSVEGCRGLLLALNKSDLREAKA-SRAKVLLQKEIEKLRLTRGTLGAQGEEDDMPATMTLGRPGQPFSLEVDSPCEVAIATCSVMKE---GGLGPIEDFI 1139
            GIG  R  +   GG     R   V+ LGPCG+GKTA+ ++L  +    TVTSM     + + +     +   L+D+PGHERLRGG +++   A ++   +FV+D +  S  ++   AE LYD+LT  +++    LL+A +KSDL  AKA +R K LL  E+E+LR T+G     G  ++    + LGR   P +L+VD+P E+  A+ +V ++   GG   IE+ I
Sbjct:  100 GIGRARGHKPLPGGKQGRARPSHVVLLGPCGAGKTALYHQLLYNTVPETVTSM----VESEGILKDKDIR--LVDFPGHERLRGGWKKQFLDAGKVAGVIFVVDAADFSTHKVREAAEFLYDILTHAAMDDGPPLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEEDRLPLGRVAVPLNLDVDAPSELTFASTNVAQQTQFGGNDAIEEDI 319
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BLAST of mRNA_A-nodosum_M_contig12.113.1 vs. uniprot
Match: A0A1V9ZHQ0_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZHQ0_9STRA)

HSP 1 Score: 113 bits (283), Expect = 5.120e-25
Identity = 73/210 (34.76%), Postives = 120/210 (57.14%), Query Frame = 3 
Query:  525 GLASNRRKGVVLFLGPCGSGKTAMCYRLSKD-VFAPTVTSMQACTYDCKKLTPSSKLSASLIDYPGHERLRGGVREELQRADRLVFVLDGSCLS--AQIAAGAELLYDVLTDTSVEGCR-GLLLALNKSD-LREAKASRAKVLLQKEIEKLRLTRGTLGAQGEEDDMPATMTLGRPGQPFSLEVDSPCEVAIATCSVMKEGGLGPIEDFI 1139
            G+ S++R  +VL +GPCG+GKTA+ +RL        TVTSM+  T +   L      + ++ D+PGHER+R    +    A +++FV+D +  +    I   AE LYD+ T   V      +++A +KSD  + A ++  + LL+ E+ +L+ TR +L A GE+D+   ++ LGR   PF+ ++D+PCEV     S++    L P+ DFI
Sbjct:   36 GIRSSKRD-IVLLVGPCGAGKTALFHRLRDGPTKVTTVTSMKE-TMEKFPLFDEENATFNICDFPGHERMRSQAGQFYPIAKKIIFVVDSTTANDAGHIRKAAEFLYDIFTHPKVNDAGVPVMIACSKSDETKAATSATVRSLLESELTQLKSTRASLEAHGEDDE---SIPLGRDNAPFAFDIDAPCEVTFENYSIVTPEALNPLLDFI 240
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BLAST of mRNA_A-nodosum_M_contig12.113.1 vs. uniprot
Match: A0A7S2DSR0_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DSR0_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.830e-24
Identity = 72/198 (36.36%), Postives = 110/198 (55.56%), Query Frame = 3 
Query:  555 VLFLGPCGSGKTAMCYRLSKDVFAPTVTSMQACTYDCKKLTPSSKLSASLIDYPGHERLRGGVREELQRADRLVFVLDGSCLSAQIAAGAELLYDVLTDTSVEGCRGLLLALNKSDLREAK-ASRAKVLLQKEIEKLRLTRGTLGAQGEEDDMPATMTLGRPGQPFSLEVDSPCEVAIATCSVMKEGGLGPIEDFIRA 1145
            VL +GPCG+GKT +  +L     A TVTSM     +C   +  +    ++ID+PGH R R  +  +L  A  +V V+D S  S Q+   ++LL+ VLT   +     +L+  NK D+  +K A R KVLLQKE+E +R TRG++  +GE+    + M LG+ G+PF  + D P     +  ++  EGGL  +  F+ A
Sbjct:    7 VLLIGPCGAGKTVIFQQLCYGGVAETVTSMSPAHSECTMGSKDAPKKINVIDFPGHMRQRPALLGQLSGAKGVVVVVDSSN-SKQVKEASDLLFSVLTAPLLPHSTSVLVFCNKMDVEGSKSADRVKVLLQKELETMRNTRGSMSQEGEDGSKGSRM-LGQEGRPFRFDHDMPNITFASGTALAGEGGLSELTTFLTA 202
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BLAST of mRNA_A-nodosum_M_contig12.113.1 vs. uniprot
Match: A0A067D7V6_SAPPC (Signal recognition particle receptor subunit beta n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D7V6_SAPPC)

HSP 1 Score: 105 bits (261), Expect = 5.320e-22
Identity = 66/201 (32.84%), Postives = 107/201 (53.23%), Query Frame = 3 
Query:  552 VVLFLGPCGSGKTAMCYRLSKD-VFAPTVTSMQACTYDCKKLTPSSKLSASLIDYPGHERLRGGVREELQRADRLVFVLDGSCLS--AQIAAGAELLYDVLTDTSVE--GCRGLLLALNKSDLREAKASRAKVLLQKEIEKLRLTRGTLGAQGEEDDMPATMTLGRPGQPFSLEVDSPCEVAIATCSVMKEGGLGPIEDFI 1139
            VVL +GPCG+GKTA+ +RL        TVTSM+  T +   L      + S+ D+PGHER+R    +    A +++FV+D +  +  + I   AE LYD+ T   +   G   ++      D++ A  +  + LL+ E+ +L+ TR +L A G++D+   ++ LGR    F   +D+PC+V     S+     L P+ DFI
Sbjct:   44 VVLLVGPCGAGKTALFHRLRNGPTKVETVTSMKE-TMETFPLFDEENATISICDFPGHERMRSTATQFYPIAKKIIFVVDATTANDASHIRKAAEFLYDIFTHPKINDAGVPVMIACSKTDDVKAATPATVQSLLETELTQLKSTRASLEAHGDDDE---SIPLGRDNALFEFAIDAPCDVTFEGYSIQTPDALNPLLDFI 240
[Close]
BLAST of mRNA_A-nodosum_M_contig12.113.1 vs. uniprot
Match: A0A662WHK7_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WHK7_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.680e-21
Identity = 73/211 (34.60%), Postives = 114/211 (54.03%), Query Frame = 3 
Query:  534 SNRRKGVVLFLGPCGSGKTAMCYRLSKDVFAPTVTSMQACTYDCK---KLTPSSKLSASL--IDYPGHERLRGGVREELQRADRLVFVLDGSCLSAQIAAGAELLYDVLTDTSVEGCRG-LLLALNKSDLREAKASRA-KVLLQKEIEKLRLTRGTLGAQGEEDDMPATMT-LGRPGQPFSLEVDSPCEVAIATCSVMKEGGLGPIEDFIR 1142
            + ++  + L LGP  +GKT   + +    +  TV+SM+  T+      K  P+ K  A L  +DYPGHERLR  V +    A  +VF +D S  +      AE LYD+  +  V      +L+A NKSD   A + +A +  L+KE+ +L+ TR +L  +G++D+   +   +GR G PF  +VDSPCE++   CSV K G +  +  FI+
Sbjct:   51 TGKKNKMALLLGPRHAGKTQFFHAIRDGEYVDTVSSMKEQTFRFMVHPKYNPA-KFDAELTVVDYPGHERLRSRVPDFYPVAGCIVFFVDASD-APSFRKAAEFLYDIFANKKVNDLTPPILVACNKSDAAGAASPQAVRDALEKELTQLKKTRSSLETEGDDDEQDLSQVPVGRDGSPFQFDVDSPCEISFTKCSV-KSGSINEVVTFIQ 258
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig12.113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJF4_ECTSI4.080e-10461.17Signal recognition particle receptor subunit beta ... [more]
A0A835YTM3_9STRA4.380e-3950.32Signal recognition particle receptor subunit beta ... [more]
A0A485KDV8_9STRA1.250e-2838.81Signal recognition particle receptor subunit beta ... [more]
A0A6G0XMT9_9STRA1.160e-2736.62Signal recognition particle receptor subunit beta ... [more]
A0A024TLZ7_9STRA2.070e-2636.62Signal recognition particle receptor subunit beta ... [more]
W7U264_9STRA3.580e-2536.73Signal recognition particle receptor subunit beta ... [more]
A0A1V9ZHQ0_9STRA5.120e-2534.76Signal recognition particle receptor subunit beta ... [more]
A0A7S2DSR0_9STRA1.830e-2436.36Signal recognition particle receptor subunit beta ... [more]
A0A067D7V6_SAPPC5.320e-2232.84Signal recognition particle receptor subunit beta ... [more]
A0A662WHK7_9STRA2.680e-2134.60Signal recognition particle receptor subunit beta ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig12contigA-nodosum_M_contig12:1571379..1572906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FJF4
Preferred nameSRPRB
PFAMsSRPRB,Transferrin
Model size1528
Max annot lvl2759|Eukaryota
KEGG koko:K12272,ko:K13343,ko:K14736
KEGG TC3.A.20.1,3.A.5.8
KEGG Pathwayko03060,ko04066,ko04146,ko04216,ko04978,map03060,map04066,map04146,map04216,map04978
Hectar predicted targeting categoryother localisation
GOsGO:0000041,GO:0000166,GO:0001666,GO:0001882,GO:0001883,GO:0002164,GO:0002165,GO:0002168,GO:0002526,GO:0003002,GO:0003674,GO:0003824,GO:0003924,GO:0005047,GO:0005488,GO:0005506,GO:0005515,GO:0005525,GO:0005575,GO:0005576,GO:0005604,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005785,GO:0005789,GO:0005791,GO:0005856,GO:0005874,GO:0005881,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006875,GO:0006879,GO:0006886,GO:0006915,GO:0006950,GO:0006952,GO:0006953,GO:0006954,GO:0006986,GO:0007154,GO:0007165,GO:0007275,GO:0007389,GO:0007399,GO:0007591,GO:0008104,GO:0008150,GO:0008199,GO:0008219,GO:0008284,GO:0008363,GO:0009628,GO:0009719,GO:0009725,GO:0009791,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0010288,GO:0010720,GO:0012501,GO:0012505,GO:0014013,GO:0014015,GO:0014070,GO:0014074,GO:0015031,GO:0015630,GO:0015682,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019725,GO:0019899,GO:0022008,GO:0023052,GO:0030001,GO:0030003,GO:0030154,GO:0030176,GO:0030867,GO:0030968,GO:0031012,GO:0031090,GO:0031224,GO:0031227,GO:0031625,GO:0031641,GO:0031643,GO:0031644,GO:0031646,GO:0031984,GO:0032354,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032870,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0034620,GO:0034698,GO:0034976,GO:0035017,GO:0035293,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0036293,GO:0036498,GO:0040003,GO:0042127,GO:0042175,GO:0042221,GO:0042303,GO:0042335,GO:0042337,GO:0042592,GO:0042886,GO:0043021,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044057,GO:0044389,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0045595,GO:0045597,GO:0046683,GO:0046872,GO:0046907,GO:0046914,GO:0046916,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051094,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051286,GO:0051591,GO:0051641,GO:0051649,GO:0051716,GO:0051960,GO:0051962,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0060284,GO:0062023,GO:0065007,GO:0065008,GO:0070445,GO:0070447,GO:0070482,GO:0070727,GO:0070887,GO:0070972,GO:0071310,GO:0071320,GO:0071371,GO:0071372,GO:0071407,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0072512,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0097159,GO:0097367,GO:0098588,GO:0098771,GO:0098796,GO:0098827,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:1901265,GO:1901363,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:2000026,GO:2000177,GO:2000179
Exons1
Evalue5.41e-107
EggNOG OGsCOG2229@1|root,KOG0090@2759|Eukaryota
Ec32 ortholog descriptionSRPRB, beta subunit of the signal recognition particle receptor
Ec32 orthologEc-14_006140.1
Descriptionsignal recognition particle binding
Cds size1119
COG categoryO
BRITEko00000,ko00001,ko02044,ko04031,ko04131,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866624.6401227-UTR-A-nodosum_M_contig12:1571378..15717491680866624.6401227-UTR-A-nodosum_M_contig12:1571378..1571749Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig12 1571379..1571749 -
1680866624.6607192-UTR-A-nodosum_M_contig12:1572868..15729061680866624.6607192-UTR-A-nodosum_M_contig12:1572868..1572906Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig12 1572869..1572906 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866624.6518433-CDS-A-nodosum_M_contig12:1571749..15728681680866624.6518433-CDS-A-nodosum_M_contig12:1571749..1572868Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig12 1571750..1572868 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig12.113.1prot_A-nodosum_M_contig12.113.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig12 1571750..1572868 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig12.113.1

>prot_A-nodosum_M_contig12.113.1 ID=prot_A-nodosum_M_contig12.113.1|Name=mRNA_A-nodosum_M_contig12.113.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=373bp
MLETTVVLVTPARKNRGKGGIANKTSSWIFPVAITLASSSLAFAVTSTAI
DQTDVEGSNSSSVGGDIDTHNSAISNAEISVTDGGGQAFENAGNTLGQVL
ASADGNAAAMSIVESFLASINALLAEYGMPSASVLCAALAVPILAFALVG
KFGIGGGRNARGGLASNRRKGVVLFLGPCGSGKTAMCYRLSKDVFAPTVT
SMQACTYDCKKLTPSSKLSASLIDYPGHERLRGGVREELQRADRLVFVLD
GSCLSAQIAAGAELLYDVLTDTSVEGCRGLLLALNKSDLREAKASRAKVL
LQKEIEKLRLTRGTLGAQGEEDDMPATMTLGRPGQPFSLEVDSPCEVAIA
TCSVMKEGGLGPIEDFIRASVR*
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mRNA from alignment at A-nodosum_M_contig12:1571379..1572906-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig12.113.1 ID=mRNA_A-nodosum_M_contig12.113.1|Name=mRNA_A-nodosum_M_contig12.113.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1528bp|location=Sequence derived from alignment at A-nodosum_M_contig12:1571379..1572906- (Ascophyllum nodosum dioecious)
GCCCTATTTACTGCCCTCAAGATCAAAATAGTCTAGCCATGCTCGAGACC
ACGGTTGTCCTAGTCACTCCAGCGAGAAAGAATCGTGGTAAAGGTGGTAT
TGCCAATAAGACGTCCTCCTGGATATTCCCGGTTGCAATTACTCTGGCAT
CCTCATCGTTGGCCTTCGCGGTTACCTCGACAGCCATCGATCAAACTGAT
GTCGAAGGCAGCAACAGCAGCAGTGTTGGCGGCGATATCGACACCCACAA
CAGTGCTATAAGCAACGCGGAAATATCGGTGACCGATGGAGGTGGGCAAG
CGTTTGAGAATGCTGGTAACACACTAGGCCAAGTTCTTGCATCTGCGGAC
GGAAATGCCGCTGCAATGTCGATAGTAGAATCGTTTCTAGCTTCTATCAA
CGCTCTTCTCGCCGAGTATGGCATGCCTTCTGCGTCGGTACTCTGCGCAG
CGCTCGCCGTACCAATTCTTGCTTTTGCCTTGGTTGGGAAATTTGGTATC
GGCGGAGGGAGAAATGCCCGCGGTGGTTTGGCGTCGAATCGACGCAAGGG
CGTGGTCCTGTTCCTCGGACCGTGTGGTTCTGGTAAGACAGCAATGTGCT
ACCGCCTCAGCAAAGATGTGTTCGCTCCGACAGTGACATCGATGCAGGCC
TGCACGTACGACTGCAAGAAGCTCACCCCCAGCAGCAAGCTATCTGCCTC
CCTAATAGACTACCCGGGACACGAGAGGCTCCGTGGTGGCGTAAGAGAGG
AGCTTCAAAGGGCGGACCGCCTCGTATTTGTTCTGGACGGGTCTTGTTTG
TCCGCACAGATCGCCGCTGGCGCGGAGCTTCTGTACGACGTCCTCACGGA
TACTTCCGTCGAAGGATGTCGAGGGCTGCTGCTAGCGCTCAACAAGAGTG
ATCTCAGGGAGGCCAAAGCGTCTCGAGCTAAGGTCCTGCTGCAGAAAGAA
ATCGAAAAGCTCAGGCTCACCCGTGGGACGCTTGGGGCCCAGGGGGAGGA
GGACGACATGCCAGCGACGATGACACTCGGTCGGCCGGGCCAGCCGTTTA
GCCTAGAGGTAGACTCCCCATGCGAGGTGGCCATTGCCACCTGTTCGGTC
ATGAAAGAAGGGGGACTCGGTCCGATCGAAGATTTCATCCGCGCCTCGGT
ACGCTAGCCAGATCTAGGTTTGGTTCTGCATGTTTTTCGAGGACAGCGTC
GTAAGCTTTTTATTTGTAGAAATGGTCCCAACATGGCATTAGCTCGGTTT
CGAAACCGCCGTGGGTAGGTGACTCGGTCTGGCGGGCCAGCCGTTTAGCC
TAGAGGTAGACCCCCCATGCGAGGTAGCCATTGTCACCTGTTCGATCATG
AAGGAAGAGGGATTCGGTCCGGTCGAAGATTTCATCCGCACCTCGGTACG
CTAGCCAGATCTAGGTTTGGTTCTGCATGTTTTTCGGGGACAGCGTTGTA
AGCTTTTCAAAAGTTTTAGAAATGGTCCCAACATGGCAGTTACCTCGGTT
TTGAAACCGCCGTGGGTAGGTGTAAACC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig12:1571379..1572906-

>mRNA_A-nodosum_M_contig12.113.1 ID=mRNA_A-nodosum_M_contig12.113.1|Name=mRNA_A-nodosum_M_contig12.113.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1119bp|location=Sequence derived from alignment at A-nodosum_M_contig12:1571379..1572906- (Ascophyllum nodosum dioecious)
ATGCTCGAGACCACGGTTGTCCTAGTCACTCCAGCGAGAAAGAATCGTGG
TAAAGGTGGTATTGCCAATAAGACGTCCTCCTGGATATTCCCGGTTGCAA
TTACTCTGGCATCCTCATCGTTGGCCTTCGCGGTTACCTCGACAGCCATC
GATCAAACTGATGTCGAAGGCAGCAACAGCAGCAGTGTTGGCGGCGATAT
CGACACCCACAACAGTGCTATAAGCAACGCGGAAATATCGGTGACCGATG
GAGGTGGGCAAGCGTTTGAGAATGCTGGTAACACACTAGGCCAAGTTCTT
GCATCTGCGGACGGAAATGCCGCTGCAATGTCGATAGTAGAATCGTTTCT
AGCTTCTATCAACGCTCTTCTCGCCGAGTATGGCATGCCTTCTGCGTCGG
TACTCTGCGCAGCGCTCGCCGTACCAATTCTTGCTTTTGCCTTGGTTGGG
AAATTTGGTATCGGCGGAGGGAGAAATGCCCGCGGTGGTTTGGCGTCGAA
TCGACGCAAGGGCGTGGTCCTGTTCCTCGGACCGTGTGGTTCTGGTAAGA
CAGCAATGTGCTACCGCCTCAGCAAAGATGTGTTCGCTCCGACAGTGACA
TCGATGCAGGCCTGCACGTACGACTGCAAGAAGCTCACCCCCAGCAGCAA
GCTATCTGCCTCCCTAATAGACTACCCGGGACACGAGAGGCTCCGTGGTG
GCGTAAGAGAGGAGCTTCAAAGGGCGGACCGCCTCGTATTTGTTCTGGAC
GGGTCTTGTTTGTCCGCACAGATCGCCGCTGGCGCGGAGCTTCTGTACGA
CGTCCTCACGGATACTTCCGTCGAAGGATGTCGAGGGCTGCTGCTAGCGC
TCAACAAGAGTGATCTCAGGGAGGCCAAAGCGTCTCGAGCTAAGGTCCTG
CTGCAGAAAGAAATCGAAAAGCTCAGGCTCACCCGTGGGACGCTTGGGGC
CCAGGGGGAGGAGGACGACATGCCAGCGACGATGACACTCGGTCGGCCGG
GCCAGCCGTTTAGCCTAGAGGTAGACTCCCCATGCGAGGTGGCCATTGCC
ACCTGTTCGGTCATGAAAGAAGGGGGACTCGGTCCGATCGAAGATTTCAT
CCGCGCCTCGGTACGCTAG
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