prot_A-nodosum_M_contig1194.11.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1194.11.1
Unique Nameprot_A-nodosum_M_contig1194.11.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length228
Homology
BLAST of mRNA_A-nodosum_M_contig1194.11.1 vs. uniprot
Match: D7G689_ECTSI (Small nuclear ribonucleoprotein-associated protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G689_ECTSI)

HSP 1 Score: 261 bits (666), Expect = 3.120e-85
Identity = 145/177 (81.92%), Postives = 148/177 (83.62%), Query Frame = 0
Query:    1 MSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFKPKKGSQPA-GIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDKGKATPGGPGVGKAAXXXXXXXXVTGAARGLAXXXXXXXXXXSSMMQPQAVAASAQAQQYGRGGVPMMPRGPPGQMPPGGRGM 176
            MSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYR+FKPKKGS+ A GIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAED GKATPGGPGVG+AA        V GA RGLA          SSMMQPQAVAASAQAQ YGRG    M RGPPGQMPPGGRGM
Sbjct:    3 MSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRRFKPKKGSEAAAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDTGKATPGGPGVGRAAGRGVPTMPVQGAPRGLAGPVRGIGGPASSMMQPQAVAASAQAQAYGRGAP--MGRGPPGQMPPGGRGM 177          
BLAST of mRNA_A-nodosum_M_contig1194.11.1 vs. uniprot
Match: A0A836CGG1_9STRA (Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGG1_9STRA)

HSP 1 Score: 174 bits (441), Expect = 1.290e-50
Identity = 96/148 (64.86%), Postives = 109/148 (73.65%), Query Frame = 0
Query:    1 MSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFKPKKGSQPAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDKGKATPGGPGVGKAAXXXXXXXXVTGAA-RGLAXXXXXXXXXXSSMMQPQAVAAS 147
            M+RSSKML YVNYRMR+TI+D RVL+GT MAFDRH+N+VLGDCEE+RK K KKG Q A  HEEREEKR LGLVL+RGENV SLTVEGPPP E+ G A PGGPGVG+AA          GAA  GLA          +S+MQPQA + S
Sbjct:    3 MARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRKIKSKKG-QGAHAHEEREEKRTLGLVLVRGENVVSLTVEGPPPPEEGGTAKPGGPGVGRAAGRGMPLAPAAGAAPAGLAGPVRGVGGPAASIMQPQAASVS 149          
BLAST of mRNA_A-nodosum_M_contig1194.11.1 vs. uniprot
Match: A0A4D9CW50_9STRA (Small nuclear ribonucleoprotein-associated protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CW50_9STRA)

HSP 1 Score: 166 bits (419), Expect = 6.490e-48
Identity = 94/148 (63.51%), Postives = 107/148 (72.30%), Query Frame = 0
Query:    1 MSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFKPKKGSQPAG---IHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDKGKATPGGPGVGKAAXXXXXXXX-VTGAARGLAXXXXXXXXXXSSMMQPQAV 144
            MS+SSKML Y+NYRMR+TI D R LVGT MAFDRH+NLVLGDCEEYRK K KKGS  +G   I EE+EEKR+LGLVLLRGENV SLTVEGPPP +++ KATPGGPG+G+AA         V GA  GLA           S+M P AV
Sbjct:    3 MSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPNAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEEAKATPGGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLMTPAAV 150          
BLAST of mRNA_A-nodosum_M_contig1194.11.1 vs. uniprot
Match: A0A6V3BNK5_HETAK (Small nuclear ribonucleoprotein-associated protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V3BNK5_HETAK)

HSP 1 Score: 162 bits (411), Expect = 7.270e-47
Identity = 104/170 (61.18%), Postives = 116/170 (68.24%), Query Frame = 0
Query:    1 MSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFKPKKGSQPAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDKGKATPGGPGVGKAAXXXXXXXXVTGAARGLAXXXXXXXXXXSSMMQPQAVAASAQAQQYGRGGVPMMPRGPPGQMP 170
            MSRSSKMLQY+NYRMR+T+ DGR+LVGT MAFDRH+NL LGD EEYRK K KKG    G+ E+REEKR LGLVL+RGENV SL+VEGPPP ED  KATPGGPG G+AA          GA  GLA    XXXXXX        VAA+A +Q Y R         PPG MP
Sbjct:    3 MSRSSKMLQYINYRMRVTLQDGRMLVGTFMAFDRHMNLCLGDTEEYRKLKNKKGQ---GVVEDREEKRALGLVLVRGENVVSLSVEGPPPPEDDAKATPGGPGAGRAAGRGTVQAPAAGAPVGLAGPVRXXXXXXXXXXXXX-VAAAAPSQTYAR-------PPPPGGMP 161          
BLAST of mRNA_A-nodosum_M_contig1194.11.1 vs. uniprot
Match: A0A485LEA3_9STRA (Small nuclear ribonucleoprotein-associated protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A485LEA3_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.950e-44
Identity = 92/166 (55.42%), Postives = 107/166 (64.46%), Query Frame = 0
Query:    1 MSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFKPKKGSQPAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDKGKATPGGPGVGKAAXXXXXXXXVTGAARGLAXXXXXXXXXXSSMMQPQAVAASAQAQQYGRGGVPMMPRGPP 166
            M++SSKML Y+NYRM++T+ DGR LVGT MAFD+H+NLVLGDCEE+R  K K     A + EER +KR+LGLVLLRGENV SLTVE PPPA +       GPG G+AA        + G   GLA            MMQP  VAA A AQ YGRG   M PRGPP
Sbjct:    3 MNKSSKMLNYINYRMKVTLADGRTLVGTFMAFDKHMNLVLGDCEEFRTLKNKLKGAAASVKEERIQKRMLGLVLLRGENVVSLTVESPPPAHETEGFGNMGPGFGRAAGRGLPAAPL-GVPMGLAAPMRGVGGPAHGMMQPGQVAAQAPAQSYGRG---MPPRGPP 164          
BLAST of mRNA_A-nodosum_M_contig1194.11.1 vs. uniprot
Match: W7TUE2_9STRA (Small nuclear ribonucleoprotein associated protein b n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TUE2_9STRA)

HSP 1 Score: 161 bits (407), Expect = 2.990e-44
Identity = 83/111 (74.77%), Postives = 94/111 (84.68%), Query Frame = 0
Query:    1 MSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFKPKKGSQ---PAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDKGKATPGGPGVGKAA 108
            MS+SSKML Y+NYRMR+TI D R LVGT MAFDRH+NLVLGDCEEYRK K KKGS    P  I EE+EEKR+LGLVLLRGENV SLTVEGPPP +++ KATPGGPG+G+AA
Sbjct:   37 MSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPTAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEEAKATPGGPGMGRAA 147          
BLAST of mRNA_A-nodosum_M_contig1194.11.1 vs. uniprot
Match: A0A7S2HQ73_9STRA (Small nuclear ribonucleoprotein-associated protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HQ73_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.810e-42
Identity = 97/174 (55.75%), Postives = 115/174 (66.09%), Query Frame = 0
Query:    1 MSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFKPKKGSQPAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDKGKATPGGPGVGKAAXXXXXXXXVTGAARGLAXXXXXXXXXXSSMMQPQA-VAASAQAQQYGRGGVPMMPRGPPGQMPPGG 173
            M++SSKML ++NYRMR+TI D R LVGT MAFD+H+NLVLGDCEEYRK K KKG    G+ EEREEKR LGLVL+RGE V S++VEGPPP +++GK  PGGPGVG+AA        +  A  GLA    XXXXXX     P   +AA A A          +P  PP  MPP G
Sbjct:    3 MAKSSKMLNFINYRMRVTIQDSRCLVGTFMAFDKHMNLVLGDCEEYRKIKAKKG---VGVQEEREEKRTLGLVLVRGEMVVSMSVEGPPPPDNEGKEAPGGPGVGRAAGRGLPAAPLGVAPAGLAGPVRXXXXXXXXXXAPPGQIAAQAGAMGMXXXXXXXLP--PPPGMPPRG 171          
BLAST of mRNA_A-nodosum_M_contig1194.11.1 vs. uniprot
Match: UPI001F5F590F (small nuclear ribonucleoprotein-associated protein B-like n=1 Tax=Vigna umbellata TaxID=87088 RepID=UPI001F5F590F)

HSP 1 Score: 152 bits (383), Expect = 2.630e-42
Identity = 96/176 (54.55%), Postives = 111/176 (63.07%), Query Frame = 0
Query:    1 MSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFKPKKGSQPAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDK-----GKATPGGPGVGKAAXXXXXXXXVTGAARGLAXXXXXXXXXXSSMMQPQ-AVAASAQAQQYGRGGVPMMPRGPPGQMP 170
            MS+SSKMLQY+NYRMR+TI DGR LVG  MAFDRH+NLVLGDCEE+RK  P KG +PA   + RE++R LGLVLLRGE V S+TVEGPPP E+      G A   GPG+G+AA        V  A  GLA            MMQPQ +      A  Y  GG P+M   PPGQMP
Sbjct:    3 MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKPAEGGD-REDRRTLGLVLLRGEEVISMTVEGPPPPEESRSKAVGAAALAGPGIGRAAGRGIPPAPVVQAQPGLAGPVRGVGGPAPGMMQPQISRPPQLNAPPY-PGGPPVMR--PPGQMP 174          
BLAST of mRNA_A-nodosum_M_contig1194.11.1 vs. uniprot
Match: A0A4P1RS25_LUPAN (Small nuclear ribonucleoprotein-associated protein n=6 Tax=Lupinus TaxID=3869 RepID=A0A4P1RS25_LUPAN)

HSP 1 Score: 153 bits (387), Expect = 2.740e-42
Identity = 99/183 (54.10%), Postives = 112/183 (61.20%), Query Frame = 0
Query:    1 MSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFKPKKGSQPAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDK-----GKATPGGPGVGKAAXXXXXXXXVTGAARGLAXXXXXXXXXXSSMMQPQAVAA---SAQAQQYGRGGVPMMPRGPPGQMP--PGG 173
            MS+SSKMLQ++NYRMR+TI DGR LVG  MAFDRH+NLVLGDCEE+RK  P KG +PA   EERE++R LGLVLLRGE V S+TVEGPPP E+        A  GGPG+G+AA        V  A  GLA            MMQPQ       SA    Y  G   M P   PGQMP  PGG
Sbjct:    3 MSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKPA---EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVNSAALGGPGLGRAAGRGIPAAPVVQAQPGLAGPVRGVGGPAPGMMQPQISRPPQLSAPPVSYPPGAPVMRP---PGQMPGYPGG 179          
BLAST of mRNA_A-nodosum_M_contig1194.11.1 vs. uniprot
Match: A0A2I0AW41_9ASPA (Small nuclear ribonucleoprotein-associated protein n=5 Tax=Orchidaceae TaxID=4747 RepID=A0A2I0AW41_9ASPA)

HSP 1 Score: 152 bits (384), Expect = 9.460e-42
Identity = 93/177 (52.54%), Postives = 108/177 (61.02%), Query Frame = 0
Query:    1 MSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFKPKKGSQPAG--IHEEREEKRVLGLVLLRGENVQSLTVEGPPPA-EDKGKATPG----GPGVGKAAXXXXXXXXVTGAARGLAXXXXXXXXXXSSMMQPQAVAASAQAQQYGRGGVPMMPRGPPGQMP 170
            MS+ SKMLQY+NYRMR+TI DGR+LVG  MAFDRH+NLVLGDCEE+RK  P KGS+ AG    EERE++R LGLVLLRGE V S+TVEGPPP  E + KAT      GPG+G+AA        +  A  GLA            MMQPQ                P +   PPGQMP
Sbjct:    3 MSKGSKMLQYINYRMRVTIQDGRMLVGKFMAFDRHMNLVLGDCEEFRKLPPTKGSKKAGGGTAEEREDRRTLGLVLLRGEEVVSMTVEGPPPXDESRAKATAASALAGPGIGRAAGRGIPTAPMVQAQPGLAGPIRGVGGPSPGMMQPQIARPPVPQLSAPPISYPQVRPPPPGQMP 179          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1194.11.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G689_ECTSI3.120e-8581.92Small nuclear ribonucleoprotein-associated protein... [more]
A0A836CGG1_9STRA1.290e-5064.86Sm domain-containing protein n=1 Tax=Tribonema min... [more]
A0A4D9CW50_9STRA6.490e-4863.51Small nuclear ribonucleoprotein-associated protein... [more]
A0A6V3BNK5_HETAK7.270e-4761.18Small nuclear ribonucleoprotein-associated protein... [more]
A0A485LEA3_9STRA1.950e-4455.42Small nuclear ribonucleoprotein-associated protein... [more]
W7TUE2_9STRA2.990e-4474.77Small nuclear ribonucleoprotein associated protein... [more]
A0A7S2HQ73_9STRA1.810e-4255.75Small nuclear ribonucleoprotein-associated protein... [more]
UPI001F5F590F2.630e-4254.55small nuclear ribonucleoprotein-associated protein... [more]
A0A4P1RS25_LUPAN2.740e-4254.10Small nuclear ribonucleoprotein-associated protein... [more]
A0A2I0AW41_9ASPA9.460e-4252.54Small nuclear ribonucleoprotein-associated protein... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..85
e-value: 2.4E-20
score: 83.6
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 7..83
e-value: 1.3E-18
score: 66.4
NoneNo IPR availableGENE3D2.30.30.100coord: 3..92
e-value: 6.8E-30
score: 104.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 190..227
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..227
NoneNo IPR availablePANTHERPTHR10701:SF18SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEINcoord: 1..224
NoneNo IPR availablePANTHERPTHR10701SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND Ncoord: 1..224
NoneNo IPR availableCDDcd01717Sm_Bcoord: 3..86
e-value: 1.42211E-45
score: 144.616
IPR017131Small ribonucleoprotein associated, SmB/SmNPIRSFPIRSF037187SmB_SmNcoord: 1..226
e-value: 5.0E-67
score: 223.9
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 5..141

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1194contigA-nodosum_M_contig1194:88331..90296 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1194.11.1mRNA_A-nodosum_M_contig1194.11.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1194 88102..90302 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1194.11.1 ID=prot_A-nodosum_M_contig1194.11.1|Name=mRNA_A-nodosum_M_contig1194.11.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=228bp
MSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFK
PKKGSQPAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDKGKATPG
GPGVGKAAGRGVPTMPVTGAARGLAGPVRGIGGPASSMMQPQAVAASAQA
QQYGRGGVPMMPRGPPGQMPPGGRGMPPAGYGGPPGGMGMPPMGGYPPGM
PPGGMGRGMPPPGQYHPRPGMPPPRSG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR017131snRNP-assoc_SmB/SmN
IPR010920LSM_dom_sf