mRNA_A-nodosum_M_contig1194.11.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1194.11.1
Unique NamemRNA_A-nodosum_M_contig1194.11.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1194.11.1 vs. uniprot
Match: D7G689_ECTSI (Small nuclear ribonucleoprotein-associated protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G689_ECTSI)

HSP 1 Score: 262 bits (670), Expect = 1.320e-84
Identity = 146/178 (82.02%), Postives = 149/178 (83.71%), Query Frame = 1 
Query:    4 SMSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFKPKKGSQPA-GIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDKGKATPGGPGVGKAAXXXXXXXXVTGAARGLAXXXXXXXXXXSSMMQPQAVAASAQAQQYGRGGVPMMPRGPPGQMPPGGRGM 534
            SMSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYR+FKPKKGS+ A GIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAED GKATPGGPGVG+AA        V GA RGLA          SSMMQPQAVAASAQAQ YGRG    M RGPPGQMPPGGRGM
Sbjct:    2 SMSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRRFKPKKGSEAAAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDTGKATPGGPGVGRAAGRGVPTMPVQGAPRGLAGPVRGIGGPASSMMQPQAVAASAQAQAYGRGAP--MGRGPPGQMPPGGRGM 177
[Close]
BLAST of mRNA_A-nodosum_M_contig1194.11.1 vs. uniprot
Match: A0A836CGG1_9STRA (Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGG1_9STRA)

HSP 1 Score: 174 bits (442), Expect = 1.130e-49
Identity = 96/149 (64.43%), Postives = 110/149 (73.83%), Query Frame = 1 
Query:    4 SMSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFKPKKGSQPAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDKGKATPGGPGVGKAAXXXXXXXXVTGAA-RGLAXXXXXXXXXXSSMMQPQAVAAS 447
            +M+RSSKML YVNYRMR+TI+D RVL+GT MAFDRH+N+VLGDCEE+RK K KKG Q A  HEEREEKR LGLVL+RGENV SLTVEGPPP E+ G A PGGPGVG+AA          GAA  GLA          +S+MQPQA + S
Sbjct:    2 AMARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRKIKSKKG-QGAHAHEEREEKRTLGLVLVRGENVVSLTVEGPPPPEEGGTAKPGGPGVGRAAGRGMPLAPAAGAAPAGLAGPVRGVGGPAASIMQPQAASVS 149
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BLAST of mRNA_A-nodosum_M_contig1194.11.1 vs. uniprot
Match: A0A4D9CW50_9STRA (Small nuclear ribonucleoprotein-associated protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CW50_9STRA)

HSP 1 Score: 167 bits (423), Expect = 1.910e-47
Identity = 95/149 (63.76%), Postives = 108/149 (72.48%), Query Frame = 1 
Query:    4 SMSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFKPKKGSQPAG---IHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDKGKATPGGPGVGKAAXXXXXXXX-VTGAARGLAXXXXXXXXXXSSMMQPQAV 438
            SMS+SSKML Y+NYRMR+TI D R LVGT MAFDRH+NLVLGDCEEYRK K KKGS  +G   I EE+EEKR+LGLVLLRGENV SLTVEGPPP +++ KATPGGPG+G+AA         V GA  GLA           S+M P AV
Sbjct:    2 SMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPNAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEEAKATPGGPGMGRAAGRGIAVGAPVMGAPVGLAGPVRGVGGPAQSLMTPAAV 150
[Close]
BLAST of mRNA_A-nodosum_M_contig1194.11.1 vs. uniprot
Match: A0A6V3BNK5_HETAK (Small nuclear ribonucleoprotein-associated protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V3BNK5_HETAK)

HSP 1 Score: 164 bits (415), Expect = 2.100e-46
Identity = 105/171 (61.40%), Postives = 117/171 (68.42%), Query Frame = 1 
Query:    4 SMSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFKPKKGSQPAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDKGKATPGGPGVGKAAXXXXXXXXVTGAARGLAXXXXXXXXXXSSMMQPQAVAASAQAQQYGRGGVPMMPRGPPGQMP 516
            SMSRSSKMLQY+NYRMR+T+ DGR+LVGT MAFDRH+NL LGD EEYRK K KKG    G+ E+REEKR LGLVL+RGENV SL+VEGPPP ED  KATPGGPG G+AA          GA  GLA    XXXXXX        VAA+A +Q Y R         PPG MP
Sbjct:    2 SMSRSSKMLQYINYRMRVTLQDGRMLVGTFMAFDRHMNLCLGDTEEYRKLKNKKGQ---GVVEDREEKRALGLVLVRGENVVSLSVEGPPPPEDDAKATPGGPGAGRAAGRGTVQAPAAGAPVGLAGPVRXXXXXXXXXXXXX-VAAAAPSQTYAR-------PPPPGGMP 161
[Close]
BLAST of mRNA_A-nodosum_M_contig1194.11.1 vs. uniprot
Match: W7TUE2_9STRA (Small nuclear ribonucleoprotein associated protein b n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TUE2_9STRA)

HSP 1 Score: 162 bits (411), Expect = 8.770e-44
Identity = 84/112 (75.00%), Postives = 95/112 (84.82%), Query Frame = 1 
Query:    4 SMSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFKPKKGSQ---PAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDKGKATPGGPGVGKAA 330
            SMS+SSKML Y+NYRMR+TI D R LVGT MAFDRH+NLVLGDCEEYRK K KKGS    P  I EE+EEKR+LGLVLLRGENV SLTVEGPPP +++ KATPGGPG+G+AA
Sbjct:   36 SMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPTAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEEAKATPGGPGMGRAA 147
[Close]
BLAST of mRNA_A-nodosum_M_contig1194.11.1 vs. uniprot
Match: A0A485LEA3_9STRA (Small nuclear ribonucleoprotein-associated protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A485LEA3_9STRA)

HSP 1 Score: 157 bits (397), Expect = 2.160e-43
Identity = 92/166 (55.42%), Postives = 107/166 (64.46%), Query Frame = 1 
Query:    7 MSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFKPKKGSQPAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDKGKATPGGPGVGKAAXXXXXXXXVTGAARGLAXXXXXXXXXXSSMMQPQAVAASAQAQQYGRGGVPMMPRGPP 504
            M++SSKML Y+NYRM++T+ DGR LVGT MAFD+H+NLVLGDCEE+R  K K     A + EER +KR+LGLVLLRGENV SLTVE PPPA +       GPG G+AA        + G   GLA            MMQP  VAA A AQ YGRG   M PRGPP
Sbjct:    3 MNKSSKMLNYINYRMKVTLADGRTLVGTFMAFDKHMNLVLGDCEEFRTLKNKLKGAAASVKEERIQKRMLGLVLLRGENVVSLTVESPPPAHETEGFGNMGPGFGRAAGRGLPAAPL-GVPMGLAAPMRGVGGPAHGMMQPGQVAAQAPAQSYGRG---MPPRGPP 164
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BLAST of mRNA_A-nodosum_M_contig1194.11.1 vs. uniprot
Match: UPI001F5F590F (small nuclear ribonucleoprotein-associated protein B-like n=1 Tax=Vigna umbellata TaxID=87088 RepID=UPI001F5F590F)

HSP 1 Score: 153 bits (387), Expect = 7.070e-42
Identity = 97/177 (54.80%), Postives = 112/177 (63.28%), Query Frame = 1 
Query:    4 SMSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFKPKKGSQPAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDK-----GKATPGGPGVGKAAXXXXXXXXVTGAARGLAXXXXXXXXXXSSMMQPQ-AVAASAQAQQYGRGGVPMMPRGPPGQMP 516
            SMS+SSKMLQY+NYRMR+TI DGR LVG  MAFDRH+NLVLGDCEE+RK  P KG +PA   + RE++R LGLVLLRGE V S+TVEGPPP E+      G A   GPG+G+AA        V  A  GLA            MMQPQ +      A  Y  GG P+M   PPGQMP
Sbjct:    2 SMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKPAEGGD-REDRRTLGLVLLRGEEVISMTVEGPPPPEESRSKAVGAAALAGPGIGRAAGRGIPPAPVVQAQPGLAGPVRGVGGPAPGMMQPQISRPPQLNAPPY-PGGPPVMR--PPGQMP 174
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BLAST of mRNA_A-nodosum_M_contig1194.11.1 vs. uniprot
Match: A0A4P1RS25_LUPAN (Small nuclear ribonucleoprotein-associated protein n=6 Tax=Lupinus TaxID=3869 RepID=A0A4P1RS25_LUPAN)

HSP 1 Score: 155 bits (391), Expect = 7.510e-42
Identity = 100/184 (54.35%), Postives = 113/184 (61.41%), Query Frame = 1 
Query:    4 SMSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFKPKKGSQPAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDK-----GKATPGGPGVGKAAXXXXXXXXVTGAARGLAXXXXXXXXXXSSMMQPQAVAA---SAQAQQYGRGGVPMMPRGPPGQMP--PGG 525
            SMS+SSKMLQ++NYRMR+TI DGR LVG  MAFDRH+NLVLGDCEE+RK  P KG +PA   EERE++R LGLVLLRGE V S+TVEGPPP E+        A  GGPG+G+AA        V  A  GLA            MMQPQ       SA    Y  G   M P   PGQMP  PGG
Sbjct:    2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKPA---EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVNSAALGGPGLGRAAGRGIPAAPVVQAQPGLAGPVRGVGGPAPGMMQPQISRPPQLSAPPVSYPPGAPVMRP---PGQMPGYPGG 179
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BLAST of mRNA_A-nodosum_M_contig1194.11.1 vs. uniprot
Match: A0A7S2HQ73_9STRA (Small nuclear ribonucleoprotein-associated protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HQ73_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.360e-41
Identity = 97/175 (55.43%), Postives = 116/175 (66.29%), Query Frame = 1 
Query:    4 SMSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFKPKKGSQPAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDKGKATPGGPGVGKAAXXXXXXXXVTGAARGLAXXXXXXXXXXSSMMQPQA-VAASAQAQQYGRGGVPMMPRGPPGQMPPGG 525
            +M++SSKML ++NYRMR+TI D R LVGT MAFD+H+NLVLGDCEEYRK K KKG    G+ EEREEKR LGLVL+RGE V S++VEGPPP +++GK  PGGPGVG+AA        +  A  GLA    XXXXXX     P   +AA A A          +P  PP  MPP G
Sbjct:    2 AMAKSSKMLNFINYRMRVTIQDSRCLVGTFMAFDKHMNLVLGDCEEYRKIKAKKG---VGVQEEREEKRTLGLVLVRGEMVVSMSVEGPPPPDNEGKEAPGGPGVGRAAGRGLPAAPLGVAPAGLAGPVRXXXXXXXXXXAPPGQIAAQAGAMGMXXXXXXXLP--PPPGMPPRG 171
[Close]
BLAST of mRNA_A-nodosum_M_contig1194.11.1 vs. uniprot
Match: A0A2I0AW41_9ASPA (Small nuclear ribonucleoprotein-associated protein n=5 Tax=Orchidaceae TaxID=4747 RepID=A0A2I0AW41_9ASPA)

HSP 1 Score: 154 bits (388), Expect = 2.580e-41
Identity = 94/178 (52.81%), Postives = 109/178 (61.24%), Query Frame = 1 
Query:    4 SMSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFKPKKGSQPAG--IHEEREEKRVLGLVLLRGENVQSLTVEGPPPA-EDKGKATPG----GPGVGKAAXXXXXXXXVTGAARGLAXXXXXXXXXXSSMMQPQAVAASAQAQQYGRGGVPMMPRGPPGQMP 516
            SMS+ SKMLQY+NYRMR+TI DGR+LVG  MAFDRH+NLVLGDCEE+RK  P KGS+ AG    EERE++R LGLVLLRGE V S+TVEGPPP  E + KAT      GPG+G+AA        +  A  GLA            MMQPQ                P +   PPGQMP
Sbjct:    2 SMSKGSKMLQYINYRMRVTIQDGRMLVGKFMAFDRHMNLVLGDCEEFRKLPPTKGSKKAGGGTAEEREDRRTLGLVLLRGEEVVSMTVEGPPPXDESRAKATAASALAGPGIGRAAGRGIPTAPMVQAQPGLAGPIRGVGGPSPGMMQPQIARPPVPQLSAPPISYPQVRPPPPGQMP 179
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1194.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G689_ECTSI1.320e-8482.02Small nuclear ribonucleoprotein-associated protein... [more]
A0A836CGG1_9STRA1.130e-4964.43Sm domain-containing protein n=1 Tax=Tribonema min... [more]
A0A4D9CW50_9STRA1.910e-4763.76Small nuclear ribonucleoprotein-associated protein... [more]
A0A6V3BNK5_HETAK2.100e-4661.40Small nuclear ribonucleoprotein-associated protein... [more]
W7TUE2_9STRA8.770e-4475.00Small nuclear ribonucleoprotein associated protein... [more]
A0A485LEA3_9STRA2.160e-4355.42Small nuclear ribonucleoprotein-associated protein... [more]
UPI001F5F590F7.070e-4254.80small nuclear ribonucleoprotein-associated protein... [more]
A0A4P1RS25_LUPAN7.510e-4254.35Small nuclear ribonucleoprotein-associated protein... [more]
A0A7S2HQ73_9STRA1.360e-4155.43Small nuclear ribonucleoprotein-associated protein... [more]
A0A2I0AW41_9ASPA2.580e-4152.81Small nuclear ribonucleoprotein-associated protein... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1194contigA-nodosum_M_contig1194:88102..90302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G689
Preferred nameSNRPB
PFAMsLSM
Model size919
Max annot lvl2759|Eukaryota
KEGG koko:K11086,ko:K11100,ko:K12184,ko:K20824,ko:K22138
KEGG TC2.A.105.1
KEGG Pathwayko03040,ko04144,ko05322,map03040,map04144,map05322
KEGG ModuleM00351,M00352,M00354,M00355,M00398,M00409
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000395,GO:0000398,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005683,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005697,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006376,GO:0006396,GO:0006397,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007399,GO:0007417,GO:0007420,GO:0007548,GO:0008150,GO:0008152,GO:0008213,GO:0008334,GO:0008380,GO:0008406,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010467,GO:0015030,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0017069,GO:0018130,GO:0019438,GO:0019538,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030532,GO:0030620,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034709,GO:0034719,GO:0036211,GO:0042221,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044877,GO:0045137,GO:0045292,GO:0045495,GO:0046483,GO:0046540,GO:0046907,GO:0048232,GO:0048468,GO:0048513,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050896,GO:0051117,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0060322,GO:0061458,GO:0065003,GO:0070013,GO:0070034,GO:0070990,GO:0071004,GO:0071005,GO:0071007,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071204,GO:0071208,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0097659,GO:0120114,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1990234,GO:1990446,GO:1990447,GO:1990904
Exons3
Evalue5.11e-86
EggNOG OGsCOG1958@1|root,KOG3168@2759|Eukaryota
Ec32 ortholog descriptionSmall nuclear ribonucleoprotein-associated protein B
Ec32 orthologEc-10_000980.1
DescriptionmRNA splicing, via spliceosome
Cds size684
COG categoryK
BRITEko00000,ko00001,ko00002,ko02000,ko03029,ko03032,ko03041,ko04131,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866611.2861683-UTR-A-nodosum_M_contig1194:88101..883301680866611.2861683-UTR-A-nodosum_M_contig1194:88101..88330Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1194 88102..88330 -
1680866611.3332715-UTR-A-nodosum_M_contig1194:90296..903021680866611.3332715-UTR-A-nodosum_M_contig1194:90296..90302Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1194 90297..90302 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866611.3016057-CDS-A-nodosum_M_contig1194:88330..885841680866611.3016057-CDS-A-nodosum_M_contig1194:88330..88584Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1194 88331..88584 -
1680866611.310809-CDS-A-nodosum_M_contig1194:89046..893621680866611.310809-CDS-A-nodosum_M_contig1194:89046..89362Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1194 89047..89362 -
1680866611.3243484-CDS-A-nodosum_M_contig1194:90182..902961680866611.3243484-CDS-A-nodosum_M_contig1194:90182..90296Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1194 90183..90296 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1194.11.1prot_A-nodosum_M_contig1194.11.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1194 88331..90296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1194.11.1

>prot_A-nodosum_M_contig1194.11.1 ID=prot_A-nodosum_M_contig1194.11.1|Name=mRNA_A-nodosum_M_contig1194.11.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=228bp
MSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFK
PKKGSQPAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDKGKATPG
GPGVGKAAGRGVPTMPVTGAARGLAGPVRGIGGPASSMMQPQAVAASAQA
QQYGRGGVPMMPRGPPGQMPPGGRGMPPAGYGGPPGGMGMPPMGGYPPGM
PPGGMGRGMPPPGQYHPRPGMPPPRSG*
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mRNA from alignment at A-nodosum_M_contig1194:88102..90302-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1194.11.1 ID=mRNA_A-nodosum_M_contig1194.11.1|Name=mRNA_A-nodosum_M_contig1194.11.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2201bp|location=Sequence derived from alignment at A-nodosum_M_contig1194:88102..90302- (Ascophyllum nodosum dioecious)
CAGTCGATGTCGCGCAGCAGCAAGATGCTGCAGTACGTGAATTACCGCAT
GCGGATCACGATCCTCGACGGTCGTGTGCTTGTCGGCACCCTCATGGCCT
TCGATCGCCACCTTAACCTGGTGAGTGTCCTCCGACAAAAAGTTTTGAGT
CCGACGGTACACGACGATGACTGACCTGACCGTCGCGTCAATAATGTGAC
GGACGGTTGTACTGCCAAGATGTGATGCCAATAGGGGTTTTTTCGTACTG
TACGTGGTACCCAGTAAATGTGTTACGCTATAGACGTTACGTTAGACATC
GCTTGACTCTTTCGCCTTGCTGTCCCCCGTCCCCTGTCCAAAAGCTGTGC
TTCTGTTTATTCTGTATGTATTTCAGTACCCAGTAGTAATAGTAATACCT
GGTAGTTACGTTTGCCCTCCTAATAATAATATCTGACTGTATTGTGTATT
GCATTGTAAAACAAAGTATTTGGATGGTGTCTGTTCCCCCATAGTGTTTC
CGCTCACTGAATCATACTGCTTCTTGTAACAGTTCTTAAATTAGGGAAGA
CGTAGGGCAACGATTGGACCAAACGGAAGTCAACACGCTTACATAGGTCC
TAGTAATCCCACTCAAGTCAGCTCAATTGCCTCAGAACCCACCGCGGTTT
TTAGCGTTTGAGGAGAGTCTGCGAATCGCGTGATGATACAACTAGAGACA
TACAAACCACGAGATTCTAACCCGTACAGCTTGTCGCTGTTTTTTATCGC
AACCAACAGTCCTAACGCTTCCAAGTCCGTTGGTCCATCCCATTCCGTTC
CTCCACCTTGATTTGGGGTCACGACACCCTTCTATGCTACATATGATGCG
CTATGAAGGACGACGGACACAACAAAAGCGAACGCCTCCTGAAACACGCG
TGACAACATCGCACGCATGTCGTCGCTATTGCTATCGCAGGTTCTCGGCG
ACTGCGAGGAATACCGCAAATTCAAGCCGAAAAAGGGTTCCCAGCCCGCC
GGCATCCACGAGGAGCGCGAGGAGAAGCGAGTGCTCGGGTTGGTGCTCCT
TCGCGGCGAAAACGTGCAGTCCCTCACCGTGGAAGGCCCGCCTCCCGCAG
AGGACAAGGGTAAGGCGACCCCGGGGGGACCGGGGGTGGGTAAGGCAGCG
GGTCGAGGCGTTCCGACCATGCCGGTGACCGGCGCCGCGCGAGGGCTTGC
GGGTCCCGTGAGGGGGATTGGCGGCCCGGCGTCTTCGATGATGCAGCCTC
AAGCAGGTGAGTGGAGTGGATTTGTTGTTTCGGCAGGATTTTGGTCGATG
TTGGAGAAATACAGGGCGCGCTTTGTTTCAAGCTGCCGAGGTTGAACGTA
TGTACGGCAGTTCCCACGGTCTTATGCTGGGGGAACGCGGGACGACGGAA
CGGGGTGTATACTTTGCGCGCGTAGATGTGAAGGTCTTACGTCCCCCGCG
CGTGATTCCGCGCCCGGGTCCGTCAAGCCCAGAAATCTCGCTCAAGGCTT
CGGTGCCGCCGCCTTTTCTTAAGTCACCTGATTTTCCTCCACCTTTATGG
CTTACTGCTGCATTTACTTATTTCTAGGCCATGAGGTGGTCCCAAGGAAT
CGACAAAAATCGCATATTTTGCTTTCTCATTCCTGACCCCCTCCCTTATT
ACCCTACCCCTGTCTTGACCTTTTACCGTCAATCATTCCTACCCTGCTTG
CATAAACGAACACAAAAGTGGCGGCATCCGCGCAAGCCCAGCAGTACGGA
CGCGGTGGCGTTCCCATGATGCCCCGTGGTCCCCCTGGACAAATGCCTCC
CGGTGGTCGAGGAATGCCCCCCGCCGGCTACGGAGGGCCTCCGGGAGGAA
TGGGCATGCCGCCGATGGGTGGCTATCCTCCGGGTATGCCACCGGGGGGG
ATGGGAAGAGGCATGCCGCCCCCGGGGCAGTACCATCCACGGCCGGGCAT
GCCGCCGCCGCGATCTGGGTAGGTTAGAGGGATAATAATGGCGGCGGTTA
CAGGCTTGTTGGATGGAGGAAACAACGTCAAAGCAGTTGTCATGGGGGAG
GGGGGGGTTGGAATATATCCACGTACCTTCTCAACTGACTGGGCTGACCG
ATCAGTCCATGCTTTCATCGCCAAGAGCGCCATCTTAAGGGTTTTGATCG
TCGGACTGGGCTGCTAATCTCAGGTCTTGGTACACCATGCGGCACTCGGT
A
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1194:88102..90302-

>mRNA_A-nodosum_M_contig1194.11.1 ID=mRNA_A-nodosum_M_contig1194.11.1|Name=mRNA_A-nodosum_M_contig1194.11.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at A-nodosum_M_contig1194:88102..90302- (Ascophyllum nodosum dioecious)
ATGTCGCGCAGCAGCAAGATGCTGCAGTACGTGAATTACCGCATGCGGAT
CACGATCCTCGACGGTCGTGTGCTTGTCGGCACCCTCATGGCCTTCGATC
GCCACCTTAACCTGGTTCTCGGCGACTGCGAGGAATACCGCAAATTCAAG
CCGAAAAAGGGTTCCCAGCCCGCCGGCATCCACGAGGAGCGCGAGGAGAA
GCGAGTGCTCGGGTTGGTGCTCCTTCGCGGCGAAAACGTGCAGTCCCTCA
CCGTGGAAGGCCCGCCTCCCGCAGAGGACAAGGGTAAGGCGACCCCGGGG
GGACCGGGGGTGGGTAAGGCAGCGGGTCGAGGCGTTCCGACCATGCCGGT
GACCGGCGCCGCGCGAGGGCTTGCGGGTCCCGTGAGGGGGATTGGCGGCC
CGGCGTCTTCGATGATGCAGCCTCAAGCAGTGGCGGCATCCGCGCAAGCC
CAGCAGTACGGACGCGGTGGCGTTCCCATGATGCCCCGTGGTCCCCCTGG
ACAAATGCCTCCCGGTGGTCGAGGAATGCCCCCCGCCGGCTACGGAGGGC
CTCCGGGAGGAATGGGCATGCCGCCGATGGGTGGCTATCCTCCGGGTATG
CCACCGGGGGGGATGGGAAGAGGCATGCCGCCCCCGGGGCAGTACCATCC
ACGGCCGGGCATGCCGCCGCCGCGATCTGGGTAG
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