prot_A-nodosum_M_contig1178.7.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1178.7.1
Unique Nameprot_A-nodosum_M_contig1178.7.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length57
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1178.7.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.270e-7
Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 0 
Query:    2 SDFWIGDSGASCHMTNDACKMYCMRPPGQQ---VITSDGTRVRVECVGNIDVVFHGRSD 57
            S  WIGDS ++ H T+D   +Y  RPP  +   +   DG +++ EC G++DVVFH R D
Sbjct:   13 STVWIGDSASTVHATSDGTHVYNTRPPLAEETFLFIGDGRKLKAECFGSLDVVFHCRED 71
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1178.7.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JCD8_9PHAE1.270e-742.37Integrase catalytic domain-containing protein n=1 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1178contigA-nodosum_M_contig1178:148131..148301 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1178.7.1mRNA_A-nodosum_M_contig1178.7.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1178 148131..148301 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1178.7.1 ID=prot_A-nodosum_M_contig1178.7.1|Name=mRNA_A-nodosum_M_contig1178.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=57bp
RSDFWIGDSGASCHMTNDACKMYCMRPPGQQVITSDGTRVRVECVGNIDV
VFHGRSD
back to top