mRNA_A-nodosum_M_contig1178.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1178.7.1
Unique NamemRNA_A-nodosum_M_contig1178.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1178.7.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.270e-7
Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:    4 SDFWIGDSGASCHMTNDACKMYCMRPPGQQ---VITSDGTRVRVECVGNIDVVFHGRSD 171
            S  WIGDS ++ H T+D   +Y  RPP  +   +   DG +++ EC G++DVVFH R D
Sbjct:   13 STVWIGDSASTVHATSDGTHVYNTRPPLAEETFLFIGDGRKLKAECFGSLDVVFHCRED 71
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1178.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JCD8_9PHAE1.270e-742.37Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1178contigA-nodosum_M_contig1178:148131..148301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size172
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866592.4102404-CDS-A-nodosum_M_contig1178:148130..1483011680866592.4102404-CDS-A-nodosum_M_contig1178:148130..148301Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1178 148131..148301 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1178.7.1prot_A-nodosum_M_contig1178.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1178 148131..148301 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1178.7.1

>prot_A-nodosum_M_contig1178.7.1 ID=prot_A-nodosum_M_contig1178.7.1|Name=mRNA_A-nodosum_M_contig1178.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=57bp
RSDFWIGDSGASCHMTNDACKMYCMRPPGQQVITSDGTRVRVECVGNIDV
VFHGRSD
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mRNA from alignment at A-nodosum_M_contig1178:148131..148301-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1178.7.1 ID=mRNA_A-nodosum_M_contig1178.7.1|Name=mRNA_A-nodosum_M_contig1178.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at A-nodosum_M_contig1178:148131..148301- (Ascophyllum nodosum dioecious)
CGTAGCGATTTTTGGATAGGTGACAGTGGTGCATCCTGTCACATGACGAA
CGACGCATGCAAGATGTACTGCATGAGACCCCCAGGACAACAAGTAATCA
CGAGCGACGGCACTAGGGTCAGGGTAGAGTGTGTCGGCAATATCGACGTG
GTTTTTCACGGGAGAAGTGAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1178:148131..148301-

>mRNA_A-nodosum_M_contig1178.7.1 ID=mRNA_A-nodosum_M_contig1178.7.1|Name=mRNA_A-nodosum_M_contig1178.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=171bp|location=Sequence derived from alignment at A-nodosum_M_contig1178:148131..148301- (Ascophyllum nodosum dioecious)
CGTAGCGATTTTTGGATAGGTGACAGTGGTGCATCCTGTCACATGACGAA
CGACGCATGCAAGATGTACTGCATGAGACCCCCAGGACAACAAGTAATCA
CGAGCGACGGCACTAGGGTCAGGGTAGAGTGTGTCGGCAATATCGACGTG
GTTTTTCACGGGAGAAGTGAT
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