prot_A-nodosum_M_contig1165.18.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_A-nodosum_M_contig1165.18.2
Unique Name	prot_A-nodosum_M_contig1165.18.2
Type	polypeptide
Organism	Ascophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length	400

Homology

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BLAST of mRNA_A-nodosum_M_contig1165.18.2 vs. uniprot
Match: D7FPK4_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPK4_ECTSI)

HSP 1 Score: 355 bits (912), Expect = 3.990e-117
Identity = 262/424 (61.79%), Postives = 289/424 (68.16%), Query Frame = 0

Query:    1 MNTIQAIKRINERELEQGLSGKASWHHEYKDSAWIFAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSKGFCFVKYEDQRSTILAVDNFNGIELLGRTIRVDHKHKYALPAEVREKAEKLEEERVARGEEPSTKGPQWRPGIAYEGKQLANEHNFHKGVDVYAAPGKGSGSSDESNPSRVGMGGERGEESAAAKRERREXXXXXXXXXXXXXXXXXXXSDS-----------------HGRKKGGEDSAED-AHSRKNKXXXXXXXXXDRGGRSRE--DGERDRGRGEGSXXXXXXXXXXXNGRYSERGGEGGVDAAGVWERGARIPG-GEYHGS--FSTSNDAVSSRPAA--PASLAIGSVLDWRGLGGRGNERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMNSIGGMDRRR 399
            MN IQ IKRINERELEQG+SGKASWHHEYKDSAW+FAGGFPYDLTEGD+LCVMSQWGEIEDINLCR+KDTGKSKGFCF+KYE+Q+STILAVDNFNGI+LLGRTIRVDHKHKY+LPAEVREKAEK +EERVARGE PS KGPQWRPG+AYEGKQLA  HNFHKGVDV+A P +GSGSSD+S+    G GG  GE +         XXXXXXXXXXXXXXXXXXX                    H +    E+  E  AH +  K           GGR  E   G  D  RG+              GR S      G DA+G WERGAR PG G   G   FS+S+      PA   P  L+ G+V+DWRGLGGR        XXXXXXXXX      XXXXXXXXXXXXXXMNS+GGMDRRR
Sbjct:    1 MNVIQEIKRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQGSGSSDDSD----GAGGTLGESAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHKKDXXXEEKXEGRAHGKDEKTRSSEHPRAGNGGRGEERVGGRHDHRRGK----------EPPTGRSS------GADASGAWERGARAPGDGPSSGGTPFSSSSQPSGRAPALAPPVPLSSGNVMDWRGLGGRA--AGGRGXXXXXXXXXREGAGRXXXXXXXXXXXXXXMNSMGGMDRRR 402

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BLAST of mRNA_A-nodosum_M_contig1165.18.2 vs. uniprot
Match: A0A835YJH4_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJH4_9STRA)

HSP 1 Score: 226 bits (577), Expect = 9.040e-70
Identity = 107/171 (62.57%), Postives = 134/171 (78.36%), Query Frame = 0

Query:    1 MNTIQAIKRINERELEQGLSGKASWHHEYKDSAWIFAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSKGFCFVKYEDQRSTILAVDNFNGIELLGRTIRVDHKHKYALPAEVREKAEKLEE---ERVARGEEPSTKGPQWRPGIAYEGKQLANEHNFHKGVDVYA 168
            MN ++ I++INEREL++GL+G ASWHH+YKDSAW+F GG  Y+LTEGDV+CV+SQWGEIEDINL RD+DTGKSKGF FVKYEDQRSTILAVDN NG +LLGR +RVDH  KY LP E+++K +  +E   E+   G EP +    W+PG AYEGK++   H   +GVDV+A
Sbjct:    1 MNVVREIQKINERELKEGLTGSASWHHKYKDSAWVFVGGLGYELTEGDVICVLSQWGEIEDINLVRDQDTGKSKGFAFVKYEDQRSTILAVDNMNGAQLLGRPLRVDHVEKYRLPKELQDKEDAQQEGGGEQGGEGGEPRSAAA-WKPGHAYEGKEIRGSHTLAQGVDVWA 170

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BLAST of mRNA_A-nodosum_M_contig1165.18.2 vs. uniprot
Match: A0A7S2RL84_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RL84_9STRA)

HSP 1 Score: 226 bits (577), Expect = 1.100e-69
Identity = 112/172 (65.12%), Postives = 132/172 (76.74%), Query Frame = 0

Query:    1 MNTIQAIKRINERELEQGLSGKA-SWHHEYKDSAWIFAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSKGFCFVKYEDQRSTILAVDNFNGIELLGRTIRVDHKHKYALPAEVREKAEKLEEERVARGEE-PSTKGPQWRPGIAYEGKQLANEHNFHKGVDVYAAP 170
            MN IQ IKRINE EL +G++G A SWH +Y+DSA++F GG PYDL EGDVLCV SQWGE+EDINL RD+ TGKSKGF F+KYEDQRST+LAVDNFNG+ELLGR IRVDH  KY LP+ +REK E  EE     G E    +  ++RPG AYEG +LAN+ N HKGVD+Y  P
Sbjct:    2 MNVIQEIKRINEEELSRGVAGGAGSWHAQYRDSAYVFVGGLPYDLVEGDVLCVFSQWGEVEDINLVRDEKTGKSKGFAFIKYEDQRSTVLAVDNFNGVELLGRLIRVDHVAKYKLPSHLREKEEAEEENSGHYGPEGDGEEESKYRPGHAYEGAELANKFNIHKGVDLYGGP 173

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BLAST of mRNA_A-nodosum_M_contig1165.18.2 vs. uniprot
Match: A0A4D9D1V2_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1V2_9STRA)

HSP 1 Score: 231 bits (590), Expect = 8.730e-69
Identity = 109/169 (64.50%), Postives = 136/169 (80.47%), Query Frame = 0

Query:    1 MNTIQAIKRINERELEQGLSG-KASWHHEYKDSAWIFAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSKGFCFVKYEDQRSTILAVDNFNGIELLGRTIRVDHKHKYALPAEVREKAEKLEEERVARGEEPSTKGPQWRPGIAYEGKQLANEHNFHKGVDVYA 168
            MN ++ I+R+NE+EL++G +G + SWH +YKDSAW+F G  P  L+EGDVLCVMSQWGEIED++L RDK TGKSKGF F+KYEDQRSTILAVDN NGI+LL RT+RVDHK KYALP EV EKAE+ E+ R+  GE+    GP+W+PG AYEGK+L   H+  KGVD++A
Sbjct:    1 MNVVREIQRLNEKELQRGTAGMEGSWHGQYKDSAWVFVGSLPLQLSEGDVLCVMSQWGEIEDLHLVRDKGTGKSKGFAFLKYEDQRSTILAVDNMNGIKLLERTLRVDHKEKYALPKEVLEKAEEKEKARLEAGEDGGGGGPRWKPGHAYEGKELVEGHDLSKGVDLFA 169

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BLAST of mRNA_A-nodosum_M_contig1165.18.2 vs. uniprot
Match: A0A7S3YEY6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEY6_HETAK)

HSP 1 Score: 211 bits (537), Expect = 1.600e-62
Identity = 103/168 (61.31%), Postives = 131/168 (77.98%), Query Frame = 0

Query:    1 MNTIQAIKRINERELEQGLSGK-ASWHHEYKDSAWIFAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSKGFCFVKYEDQRSTILAVDNFNGIELLGRTIRVDHKHKYALPAEVREKAEKLEEERVARGEEPSTKGPQWRPGIAYEGKQLANEHNFHKGVDVY 167
            MN IQ IKRIN+RELE GL+G  ASWH +YK+SAW++ G  PY LTEGD+LC MSQWGEIEDIN  RDKDTGK KGF FVKYEDQRST+LAVDNFNGIEL+ RT+RVDH  KY LP EV++K ++LEE+    G++  +   ++ PG AY+  +LA++++  KG D++
Sbjct:    1 MNVIQEIKRINDRELEAGLTGTDASWHSKYKNSAWVYVGSIPYALTEGDILCFMSQWGEIEDINYVRDKDTGKPKGFAFVKYEDQRSTVLAVDNFNGIELVDRTLRVDHCEKYRLPKEVQDKEDQLEEDAKLLGKQHDSSS-KFGPGHAYKDMELASKYDIAKGQDLF 167

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BLAST of mRNA_A-nodosum_M_contig1165.18.2 vs. uniprot
Match: A0A485KUA3_9STRA (Aste57867_11943 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KUA3_9STRA)

HSP 1 Score: 209 bits (531), Expect = 1.340e-61
Identity = 100/167 (59.88%), Postives = 127/167 (76.05%), Query Frame = 0

Query:    1 MNTIQAIKRINERELEQGLSGKASWHHEYKDSAWIFAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSKGFCFVKYEDQRSTILAVDNFNGIELLGRTIRVDHKHKYALPAEVREKAEKLEEERVARGEEPSTKGPQWRPGIAYEGKQLANEHNFHKGVDVY 167
            MN I+ I+R+NE+ELEQG+  + SWHH Y+DSAW++ GG  Y+LTEGD+LCV SQ GEIEDINL RDKD+GKS GFCF+KYE   ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K + ++E      E    +G   RPG AYEGK+LAN+++ H+GVDV+
Sbjct:    1 MNVIKEIQRLNEQELEQGVGYEGSWHHIYRDSAWVYIGGLSYELTEGDILCVFSQVGEIEDINLVRDKDSGKSMGFCFIKYEHHMSTVLAVDNFNGSSLLERMLRVDHVHKYKLPKELRDKEDNVDE---PVDENDEMRG---RPGHAYEGKELANKYDIHEGVDVF 161

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BLAST of mRNA_A-nodosum_M_contig1165.18.2 vs. uniprot
Match: W4H400_9STRA (RRM domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4H400_9STRA)

HSP 1 Score: 207 bits (526), Expect = 7.030e-61
Identity = 101/167 (60.48%), Postives = 125/167 (74.85%), Query Frame = 0

Query:    1 MNTIQAIKRINERELEQGLSGKASWHHEYKDSAWIFAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSKGFCFVKYEDQRSTILAVDNFNGIELLGRTIRVDHKHKYALPAEVREKAEKLEEERVARGEEPSTKGPQWRPGIAYEGKQLANEHNFHKGVDVY 167
            MN I+ I+R+NE+ELEQG+S + SWHH Y+DSAW++ GG  YDLTEGD+LCV SQ GEIEDINL RDKDTGKS GF F+KYE+  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K     EE V    +   +G   +PG AYEGK+L N+ + H+GVDV+
Sbjct:    1 MNVIKEIQRLNEQELEQGVSIEGSWHHIYRDSAWVYVGGLSYDLTEGDILCVFSQVGEIEDINLVRDKDTGKSMGFSFIKYENHLSTVLAVDNFNGSTLLERLLRVDHVHKYKLPKELRDK-----EENVVADHDDELRG---KPGHAYEGKELENKFDIHQGVDVF 159

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BLAST of mRNA_A-nodosum_M_contig1165.18.2 vs. uniprot
Match: A0A1V9ZVW6_9STRA (U2 snRNP component IST3 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVW6_9STRA)

HSP 1 Score: 202 bits (515), Expect = 9.230e-61
Identity = 97/168 (57.74%), Postives = 125/168 (74.40%), Query Frame = 0

Query:    1 MNTIQAIKRINERELEQGLSGKASWHHEYKDSAWIFAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSKGFCFVKYEDQRSTILAVDNFNGIELLGRTIRVDHKHKYALPAEVREK--AEKLEEERVARGEEPSTKGPQWRPGIAYEGKQLANEHNFHKGVDV 166
            MN ++ I+R+N++EL+QG+  + SWH+ Y+DSAWI+ G   Y+L+EGDVLCV SQ+GEIEDINL RDK+TGKS GF F+KYED RST+LAVDNFNG  LL RT+RVDH HKY LP E+R+K  A+  EEE   RG+          PG AY+GK L N+++ H+GVD 
Sbjct:    1 MNVVKEIERLNQQELDQGIGYEGSWHYIYRDSAWIYVGSLSYELSEGDVLCVFSQFGEIEDINLVRDKETGKSMGFAFIKYEDHRSTVLAVDNFNGSTLLERTLRVDHVHKYKLPKEIRDKEDAQDFEEEEKLRGQ----------PGHAYKGKDLENKYDIHQGVDT 158

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BLAST of mRNA_A-nodosum_M_contig1165.18.2 vs. uniprot
Match: A0A6G0X0J2_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0J2_9STRA)

HSP 1 Score: 206 bits (523), Expect = 2.030e-60
Identity = 99/170 (58.24%), Postives = 128/170 (75.29%), Query Frame = 0

Query:    1 MNTIQAIKRINERELEQGLSGKASWHHEYKDSAWIFAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSKGFCFVKYEDQRSTILAVDNFNGIELLGRTIRVDHKHKYALPAEVREKAEK---LEEERVARGEEPSTKGPQWRPGIAYEGKQLANEHNFHKGVDVY 167
            MN I+ I+R+NE+ELEQG+S + SWHH Y++SAW++ G   Y+LTEGD+LCV SQ GEIEDINL RDKDTGKS GFCF+KYE+  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K +    L+++   RG+          PG AYEGK+LAN+++ H+GVDV+
Sbjct:    1 MNVIKEIQRLNEQELEQGVSYEGSWHHIYRESAWVYVGSLSYELTEGDILCVFSQVGEIEDINLVRDKDTGKSLGFCFIKYENHLSTVLAVDNFNGAMLLERMLRVDHVHKYKLPKELRDKEDDEGVLDDDAELRGQ----------PGHAYEGKELANKYDIHQGVDVF 160

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BLAST of mRNA_A-nodosum_M_contig1165.18.2 vs. uniprot
Match: A0A024UQN5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQN5_9STRA)

HSP 1 Score: 206 bits (524), Expect = 2.650e-59
Identity = 103/167 (61.68%), Postives = 125/167 (74.85%), Query Frame = 0

Query:    1 MNTIQAIKRINERELEQGLSGKASWHHEYKDSAWIFAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSKGFCFVKYEDQRSTILAVDNFNGIELLGRTIRVDHKHKYALPAEVREKAEKLEEERVARGEEPSTKGPQWRPGIAYEGKQLANEHNFHKGVDVY 167
            MN I+ I+R+NE+ELEQG+  + SWHH Y+DSAW++ GG  Y+LTEGD+LCV SQ GEIEDINL RDKDTGKS GF F+KYE+  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K    EE  VA  EE   K     PG AYEGK+LAN+ + H+GVDV+
Sbjct:    1 MNVIKEIQRLNEQELEQGVGIEGSWHHIYRDSAWVYVGGLSYELTEGDILCVFSQVGEIEDINLVRDKDTGKSMGFSFIKYENHLSTVLAVDNFNGSTLLERMLRVDHVHKYKLPKELRDK----EENEVADDEELRGK-----PGHAYEGKELANKFDIHQGVDVF 158

The following BLAST results are available for this feature:

BLAST of mRNA_A-nodosum_M_contig1165.18.2 vs. uniprot

BLAST of mRNA_A-nodosum_M_contig1165.18.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FPK4_ECTSI	3.990e-117	61.79	RRM domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A835YJH4_9STRA	9.040e-70	62.57	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A7S2RL84_9STRA	1.100e-69	65.12	Hypothetical protein (Fragment) n=1 Tax=Rhizochrom...	[more]
A0A4D9D1V2_9STRA	8.730e-69	64.50	RRM domain-containing protein n=1 Tax=Nannochlorop...	[more]
A0A7S3YEY6_HETAK	1.600e-62	61.31	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A485KUA3_9STRA	1.340e-61	59.88	Aste57867_11943 protein n=1 Tax=Aphanomyces stella...	[more]
W4H400_9STRA	7.030e-61	60.48	RRM domain-containing protein n=3 Tax=Aphanomyces ...	[more]
A0A1V9ZVW6_9STRA	9.230e-61	57.74	U2 snRNP component IST3 n=1 Tax=Thraustotheca clav...	[more]
A0A6G0X0J2_9STRA	2.030e-60	58.24	RRM domain-containing protein n=1 Tax=Aphanomyces ...	[more]
A0A024UQN5_9STRA	2.650e-59	61.68	Uncharacterized protein n=1 Tax=Aphanomyces invada...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 195..225
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 252..293
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 193..245
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 357..382
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..399
None	No IPR available	PANTHER	PTHR45880:SF1	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	coord: 1..285
None	No IPR available	PANTHER	PTHR45880	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	coord: 1..285
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 34..107 e-value: 6.4E-21 score: 85.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 35..105 e-value: 1.8E-17 score: 62.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 33..111 score: 15.886138
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..108 e-value: 1.6E-25 score: 91.7
IPR045844	Ist3-like, RNA recognition motif	CDD	cd12411	RRM_ist3_like	coord: 24..112 e-value: 6.72306E-61 score: 189.772
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 25..110

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A-nodosum_M_contig1165	contig	A-nodosum_M_contig1165:234776..236693 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ascophyllum nodosum dioecious OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_A-nodosum_M_contig1165.18.2	mRNA_A-nodosum_M_contig1165.18.2	Ascophyllum nodosum dioecious	mRNA	A-nodosum_M_contig1165 234635..236702 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_A-nodosum_M_contig1165.18.2 ID=prot_A-nodosum_M_contig1165.18.2|Name=mRNA_A-nodosum_M_contig1165.18.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=400bp
MNTIQAIKRINERELEQGLSGKASWHHEYKDSAWIFAGGFPYDLTEGDVL
CVMSQWGEIEDINLCRDKDTGKSKGFCFVKYEDQRSTILAVDNFNGIELL
GRTIRVDHKHKYALPAEVREKAEKLEEERVARGEEPSTKGPQWRPGIAYE
GKQLANEHNFHKGVDVYAAPGKGSGSSDESNPSRVGMGGERGEESAAAKR
ERREAKRARKEARREARERKKHKSDSHGRKKGGEDSAEDAHSRKNKKGHK
KDKRDDRGGRSREDGERDRGRGEGSRNDHGDRRRGDNGRYSERGGEGGVD
AAGVWERGARIPGGEYHGSFSTSNDAVSSRPAAPASLAIGSVLDWRGLGG
RGNERGGRGGRGGREGREGNRGRGRGGRGGRGDRGSEGMNSIGGMDRRR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR045844	RRM_Ist3-like
IPR035979	RBD_domain_sf