mRNA_A-nodosum_M_contig1165.18.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1165.18.2
Unique NamemRNA_A-nodosum_M_contig1165.18.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1165.18.2 vs. uniprot
Match: D7FPK4_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPK4_ECTSI)

HSP 1 Score: 354 bits (908), Expect = 9.000e-116
Identity = 262/424 (61.79%), Postives = 289/424 (68.16%), Query Frame = 1 
Query:   10 MNTIQAIKRINERELEQGLSGKASWHHEYKDSAWIFAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSKGFCFVKYEDQRSTILAVDNFNGIELLGRTIRVDHKHKYALPAEVREKAEKLEEERVARGEEPSTKGPQWRPGIAYEGKQLANEHNFHKGVDVYAAPGKGSGSSDESNPSRVGMGGERGEESAAAKRERREXXXXXXXXXXXXXXXXXXXSDS-----------------HGRKKGGEDSAED-AHSRKNKXXXXXXXXXDRGGRSRE--DGERDRGRGEGSXXXXXXXXXXXNGRYSERGGEGGVDAAGVWERGARIPG-GEYHGS--FSTSNDAVSSRPAA--PASLAIGSVLDWRGLGGRGNERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMNSIGGMDRRR 1206
            MN IQ IKRINERELEQG+SGKASWHHEYKDSAW+FAGGFPYDLTEGD+LCVMSQWGEIEDINLCR+KDTGKSKGFCF+KYE+Q+STILAVDNFNGI+LLGRTIRVDHKHKY+LPAEVREKAEK +EERVARGE PS KGPQWRPG+AYEGKQLA  HNFHKGVDV+A P +GSGSSD+S+    G GG  GE +         XXXXXXXXXXXXXXXXXXX                    H +    E+  E  AH +  K           GGR  E   G  D  RG+              GR S      G DA+G WERGAR PG G   G   FS+S+      PA   P  L+ G+V+DWRGLGGR        XXXXXXXXX      XXXXXXXXXXXXXXMNS+GGMDRRR
Sbjct:    1 MNVIQEIKRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQGSGSSDDSD----GAGGTLGESAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHKKDXXXEEKXEGRAHGKDEKTRSSEHPRAGNGGRGEERVGGRHDHRRGK----------EPPTGRSS------GADASGAWERGARAPGDGPSSGGTPFSSSSQPSGRAPALAPPVPLSSGNVMDWRGLGGRA--AGGRGXXXXXXXXXREGAGRXXXXXXXXXXXXXXMNSMGGMDRRR 402
[Close]
BLAST of mRNA_A-nodosum_M_contig1165.18.2 vs. uniprot
Match: A0A835YJH4_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJH4_9STRA)

HSP 1 Score: 226 bits (575), Expect = 7.560e-69
Identity = 107/171 (62.57%), Postives = 134/171 (78.36%), Query Frame = 1 
Query:   10 MNTIQAIKRINERELEQGLSGKASWHHEYKDSAWIFAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSKGFCFVKYEDQRSTILAVDNFNGIELLGRTIRVDHKHKYALPAEVREKAEKLEE---ERVARGEEPSTKGPQWRPGIAYEGKQLANEHNFHKGVDVYA 513
            MN ++ I++INEREL++GL+G ASWHH+YKDSAW+F GG  Y+LTEGDV+CV+SQWGEIEDINL RD+DTGKSKGF FVKYEDQRSTILAVDN NG +LLGR +RVDH  KY LP E+++K +  +E   E+   G EP +    W+PG AYEGK++   H   +GVDV+A
Sbjct:    1 MNVVREIQKINERELKEGLTGSASWHHKYKDSAWVFVGGLGYELTEGDVICVLSQWGEIEDINLVRDQDTGKSKGFAFVKYEDQRSTILAVDNMNGAQLLGRPLRVDHVEKYRLPKELQDKEDAQQEGGGEQGGEGGEPRSAAA-WKPGHAYEGKEIRGSHTLAQGVDVWA 170
[Close]
BLAST of mRNA_A-nodosum_M_contig1165.18.2 vs. uniprot
Match: A0A7S2RL84_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RL84_9STRA)

HSP 1 Score: 226 bits (575), Expect = 9.220e-69
Identity = 112/172 (65.12%), Postives = 132/172 (76.74%), Query Frame = 1 
Query:   10 MNTIQAIKRINERELEQGLSGKA-SWHHEYKDSAWIFAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSKGFCFVKYEDQRSTILAVDNFNGIELLGRTIRVDHKHKYALPAEVREKAEKLEEERVARGEE-PSTKGPQWRPGIAYEGKQLANEHNFHKGVDVYAAP 519
            MN IQ IKRINE EL +G++G A SWH +Y+DSA++F GG PYDL EGDVLCV SQWGE+EDINL RD+ TGKSKGF F+KYEDQRST+LAVDNFNG+ELLGR IRVDH  KY LP+ +REK E  EE     G E    +  ++RPG AYEG +LAN+ N HKGVD+Y  P
Sbjct:    2 MNVIQEIKRINEEELSRGVAGGAGSWHAQYRDSAYVFVGGLPYDLVEGDVLCVFSQWGEVEDINLVRDEKTGKSKGFAFIKYEDQRSTVLAVDNFNGVELLGRLIRVDHVAKYKLPSHLREKEEAEEENSGHYGPEGDGEEESKYRPGHAYEGAELANKFNIHKGVDLYGGP 173
[Close]
BLAST of mRNA_A-nodosum_M_contig1165.18.2 vs. uniprot
Match: A0A4D9D1V2_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1V2_9STRA)

HSP 1 Score: 231 bits (588), Expect = 7.380e-68
Identity = 109/169 (64.50%), Postives = 136/169 (80.47%), Query Frame = 1 
Query:   10 MNTIQAIKRINERELEQGLSG-KASWHHEYKDSAWIFAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSKGFCFVKYEDQRSTILAVDNFNGIELLGRTIRVDHKHKYALPAEVREKAEKLEEERVARGEEPSTKGPQWRPGIAYEGKQLANEHNFHKGVDVYA 513
            MN ++ I+R+NE+EL++G +G + SWH +YKDSAW+F G  P  L+EGDVLCVMSQWGEIED++L RDK TGKSKGF F+KYEDQRSTILAVDN NGI+LL RT+RVDHK KYALP EV EKAE+ E+ R+  GE+    GP+W+PG AYEGK+L   H+  KGVD++A
Sbjct:    1 MNVVREIQRLNEKELQRGTAGMEGSWHGQYKDSAWVFVGSLPLQLSEGDVLCVMSQWGEIEDLHLVRDKGTGKSKGFAFLKYEDQRSTILAVDNMNGIKLLERTLRVDHKEKYALPKEVLEKAEEKEKARLEAGEDGGGGGPRWKPGHAYEGKELVEGHDLSKGVDLFA 169
[Close]
BLAST of mRNA_A-nodosum_M_contig1165.18.2 vs. uniprot
Match: A0A7S3YEY6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEY6_HETAK)

HSP 1 Score: 210 bits (535), Expect = 1.260e-61
Identity = 103/168 (61.31%), Postives = 131/168 (77.98%), Query Frame = 1 
Query:   10 MNTIQAIKRINERELEQGLSGK-ASWHHEYKDSAWIFAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSKGFCFVKYEDQRSTILAVDNFNGIELLGRTIRVDHKHKYALPAEVREKAEKLEEERVARGEEPSTKGPQWRPGIAYEGKQLANEHNFHKGVDVY 510
            MN IQ IKRIN+RELE GL+G  ASWH +YK+SAW++ G  PY LTEGD+LC MSQWGEIEDIN  RDKDTGK KGF FVKYEDQRST+LAVDNFNGIEL+ RT+RVDH  KY LP EV++K ++LEE+    G++  +   ++ PG AY+  +LA++++  KG D++
Sbjct:    1 MNVIQEIKRINDRELEAGLTGTDASWHSKYKNSAWVYVGSIPYALTEGDILCFMSQWGEIEDINYVRDKDTGKPKGFAFVKYEDQRSTVLAVDNFNGIELVDRTLRVDHCEKYRLPKEVQDKEDQLEEDAKLLGKQHDSSS-KFGPGHAYKDMELASKYDIAKGQDLF 167
[Close]
BLAST of mRNA_A-nodosum_M_contig1165.18.2 vs. uniprot
Match: A0A485KUA3_9STRA (Aste57867_11943 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KUA3_9STRA)

HSP 1 Score: 208 bits (529), Expect = 1.040e-60
Identity = 100/167 (59.88%), Postives = 127/167 (76.05%), Query Frame = 1 
Query:   10 MNTIQAIKRINERELEQGLSGKASWHHEYKDSAWIFAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSKGFCFVKYEDQRSTILAVDNFNGIELLGRTIRVDHKHKYALPAEVREKAEKLEEERVARGEEPSTKGPQWRPGIAYEGKQLANEHNFHKGVDVY 510
            MN I+ I+R+NE+ELEQG+  + SWHH Y+DSAW++ GG  Y+LTEGD+LCV SQ GEIEDINL RDKD+GKS GFCF+KYE   ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K + ++E      E    +G   RPG AYEGK+LAN+++ H+GVDV+
Sbjct:    1 MNVIKEIQRLNEQELEQGVGYEGSWHHIYRDSAWVYIGGLSYELTEGDILCVFSQVGEIEDINLVRDKDSGKSMGFCFIKYEHHMSTVLAVDNFNGSSLLERMLRVDHVHKYKLPKELRDKEDNVDE---PVDENDEMRG---RPGHAYEGKELANKYDIHEGVDVF 161
[Close]
BLAST of mRNA_A-nodosum_M_contig1165.18.2 vs. uniprot
Match: W4H400_9STRA (RRM domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4H400_9STRA)

HSP 1 Score: 206 bits (524), Expect = 5.420e-60
Identity = 101/167 (60.48%), Postives = 125/167 (74.85%), Query Frame = 1 
Query:   10 MNTIQAIKRINERELEQGLSGKASWHHEYKDSAWIFAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSKGFCFVKYEDQRSTILAVDNFNGIELLGRTIRVDHKHKYALPAEVREKAEKLEEERVARGEEPSTKGPQWRPGIAYEGKQLANEHNFHKGVDVY 510
            MN I+ I+R+NE+ELEQG+S + SWHH Y+DSAW++ GG  YDLTEGD+LCV SQ GEIEDINL RDKDTGKS GF F+KYE+  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K     EE V    +   +G   +PG AYEGK+L N+ + H+GVDV+
Sbjct:    1 MNVIKEIQRLNEQELEQGVSIEGSWHHIYRDSAWVYVGGLSYDLTEGDILCVFSQVGEIEDINLVRDKDTGKSMGFSFIKYENHLSTVLAVDNFNGSTLLERLLRVDHVHKYKLPKELRDK-----EENVVADHDDELRG---KPGHAYEGKELENKFDIHQGVDVF 159
[Close]
BLAST of mRNA_A-nodosum_M_contig1165.18.2 vs. uniprot
Match: A0A1V9ZVW6_9STRA (U2 snRNP component IST3 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVW6_9STRA)

HSP 1 Score: 202 bits (513), Expect = 7.000e-60
Identity = 97/168 (57.74%), Postives = 125/168 (74.40%), Query Frame = 1 
Query:   10 MNTIQAIKRINERELEQGLSGKASWHHEYKDSAWIFAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSKGFCFVKYEDQRSTILAVDNFNGIELLGRTIRVDHKHKYALPAEVREK--AEKLEEERVARGEEPSTKGPQWRPGIAYEGKQLANEHNFHKGVDV 507
            MN ++ I+R+N++EL+QG+  + SWH+ Y+DSAWI+ G   Y+L+EGDVLCV SQ+GEIEDINL RDK+TGKS GF F+KYED RST+LAVDNFNG  LL RT+RVDH HKY LP E+R+K  A+  EEE   RG+          PG AY+GK L N+++ H+GVD 
Sbjct:    1 MNVVKEIERLNQQELDQGIGYEGSWHYIYRDSAWIYVGSLSYELSEGDVLCVFSQFGEIEDINLVRDKETGKSMGFAFIKYEDHRSTVLAVDNFNGSTLLERTLRVDHVHKYKLPKEIRDKEDAQDFEEEEKLRGQ----------PGHAYKGKDLENKYDIHQGVDT 158
[Close]
BLAST of mRNA_A-nodosum_M_contig1165.18.2 vs. uniprot
Match: A0A6G0X0J2_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0J2_9STRA)

HSP 1 Score: 205 bits (521), Expect = 1.560e-59
Identity = 99/170 (58.24%), Postives = 128/170 (75.29%), Query Frame = 1 
Query:   10 MNTIQAIKRINERELEQGLSGKASWHHEYKDSAWIFAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSKGFCFVKYEDQRSTILAVDNFNGIELLGRTIRVDHKHKYALPAEVREKAEK---LEEERVARGEEPSTKGPQWRPGIAYEGKQLANEHNFHKGVDVY 510
            MN I+ I+R+NE+ELEQG+S + SWHH Y++SAW++ G   Y+LTEGD+LCV SQ GEIEDINL RDKDTGKS GFCF+KYE+  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K +    L+++   RG+          PG AYEGK+LAN+++ H+GVDV+
Sbjct:    1 MNVIKEIQRLNEQELEQGVSYEGSWHHIYRESAWVYVGSLSYELTEGDILCVFSQVGEIEDINLVRDKDTGKSLGFCFIKYENHLSTVLAVDNFNGAMLLERMLRVDHVHKYKLPKELRDKEDDEGVLDDDAELRGQ----------PGHAYEGKELANKYDIHQGVDVF 160
[Close]
BLAST of mRNA_A-nodosum_M_contig1165.18.2 vs. uniprot
Match: A0A024UQN5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQN5_9STRA)

HSP 1 Score: 205 bits (522), Expect = 2.030e-58
Identity = 103/167 (61.68%), Postives = 125/167 (74.85%), Query Frame = 1 
Query:   10 MNTIQAIKRINERELEQGLSGKASWHHEYKDSAWIFAGGFPYDLTEGDVLCVMSQWGEIEDINLCRDKDTGKSKGFCFVKYEDQRSTILAVDNFNGIELLGRTIRVDHKHKYALPAEVREKAEKLEEERVARGEEPSTKGPQWRPGIAYEGKQLANEHNFHKGVDVY 510
            MN I+ I+R+NE+ELEQG+  + SWHH Y+DSAW++ GG  Y+LTEGD+LCV SQ GEIEDINL RDKDTGKS GF F+KYE+  ST+LAVDNFNG  LL R +RVDH HKY LP E+R+K    EE  VA  EE   K     PG AYEGK+LAN+ + H+GVDV+
Sbjct:    1 MNVIKEIQRLNEQELEQGVGIEGSWHHIYRDSAWVYVGGLSYELTEGDILCVFSQVGEIEDINLVRDKDTGKSMGFSFIKYENHLSTVLAVDNFNGSTLLERMLRVDHVHKYKLPKELRDK----EENEVADDEELRGK-----PGHAYEGKELANKFDIHQGVDVF 158
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1165.18.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPK4_ECTSI9.000e-11661.79RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YJH4_9STRA7.560e-6962.57RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2RL84_9STRA9.220e-6965.12Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A4D9D1V2_9STRA7.380e-6864.50RRM domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7S3YEY6_HETAK1.260e-6161.31Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A485KUA3_9STRA1.040e-6059.88Aste57867_11943 protein n=1 Tax=Aphanomyces stella... [more]
W4H400_9STRA5.420e-6060.48RRM domain-containing protein n=3 Tax=Aphanomyces ... [more]
A0A1V9ZVW6_9STRA7.000e-6057.74U2 snRNP component IST3 n=1 Tax=Thraustotheca clav... [more]
A0A6G0X0J2_9STRA1.560e-5958.24RRM domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A024UQN5_9STRA2.030e-5861.68Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1165contigA-nodosum_M_contig1165:234635..236702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FPK4
Preferred nameRBMX2
PFAMsRRM_1,zf-CCCH
Model size1350
Max annot lvl2759|Eukaryota
KEGG koko:K07919,ko:K13107,ko:K14807
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000349,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005686,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006366,GO:0006396,GO:0006397,GO:0006401,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007623,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009299,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010638,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031503,GO:0031974,GO:0031981,GO:0032204,GO:0032206,GO:0032268,GO:0032270,GO:0032501,GO:0032774,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0034248,GO:0034250,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0042162,GO:0042752,GO:0042789,GO:0042886,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043487,GO:0043488,GO:0043565,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0045727,GO:0045893,GO:0045935,GO:0046483,GO:0046700,GO:0046907,GO:0048511,GO:0048518,GO:0048522,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051028,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051641,GO:0051649,GO:0051972,GO:0051973,GO:0060255,GO:0061013,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070274,GO:0070727,GO:0071011,GO:0071013,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097167,GO:0097525,GO:0097659,GO:0120114,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1902680,GO:1903311,GO:1903506,GO:1903508,GO:1904353,GO:1904355,GO:1905661,GO:1905663,GO:1990904,GO:2000112,GO:2000278,GO:2000573,GO:2001141,GO:2001252
Exons4
Evalue6.54e-118
EggNOG OGsKOG0126@1|root,KOG0126@2759|Eukaryota
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-12_000920.1
EC3.6.4.13
DescriptionmRNA-containing ribonucleoprotein complex export from nucleus
Cds size1200
COG categoryL
BRITEko00000,ko01000,ko03009,ko03041,ko04031,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1165.18.2prot_A-nodosum_M_contig1165.18.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1165 234776..236693 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866571.3461215-UTR-A-nodosum_M_contig1165:234634..2347751680866571.3461215-UTR-A-nodosum_M_contig1165:234634..234775Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1165 234635..234775 -
1680866571.408651-UTR-A-nodosum_M_contig1165:236693..2367021680866571.408651-UTR-A-nodosum_M_contig1165:236693..236702Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1165 236694..236702 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866571.3619015-CDS-A-nodosum_M_contig1165:234775..2354591680866571.3619015-CDS-A-nodosum_M_contig1165:234775..235459Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1165 234776..235459 -
1680866571.3727624-CDS-A-nodosum_M_contig1165:235595..2357601680866571.3727624-CDS-A-nodosum_M_contig1165:235595..235760Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1165 235596..235760 -
1680866571.3838704-CDS-A-nodosum_M_contig1165:236131..2362601680866571.3838704-CDS-A-nodosum_M_contig1165:236131..236260Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1165 236132..236260 -
1680866571.3987868-CDS-A-nodosum_M_contig1165:236471..2366931680866571.3987868-CDS-A-nodosum_M_contig1165:236471..236693Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1165 236472..236693 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1165.18.2

>prot_A-nodosum_M_contig1165.18.2 ID=prot_A-nodosum_M_contig1165.18.2|Name=mRNA_A-nodosum_M_contig1165.18.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=400bp
MNTIQAIKRINERELEQGLSGKASWHHEYKDSAWIFAGGFPYDLTEGDVL
CVMSQWGEIEDINLCRDKDTGKSKGFCFVKYEDQRSTILAVDNFNGIELL
GRTIRVDHKHKYALPAEVREKAEKLEEERVARGEEPSTKGPQWRPGIAYE
GKQLANEHNFHKGVDVYAAPGKGSGSSDESNPSRVGMGGERGEESAAAKR
ERREAKRARKEARREARERKKHKSDSHGRKKGGEDSAEDAHSRKNKKGHK
KDKRDDRGGRSREDGERDRGRGEGSRNDHGDRRRGDNGRYSERGGEGGVD
AAGVWERGARIPGGEYHGSFSTSNDAVSSRPAAPASLAIGSVLDWRGLGG
RGNERGGRGGRGGREGREGNRGRGRGGRGGRGDRGSEGMNSIGGMDRRR*
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mRNA from alignment at A-nodosum_M_contig1165:234635..236702-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1165.18.2 ID=mRNA_A-nodosum_M_contig1165.18.2|Name=mRNA_A-nodosum_M_contig1165.18.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2068bp|location=Sequence derived from alignment at A-nodosum_M_contig1165:234635..236702- (Ascophyllum nodosum dioecious)
TTAGACGCAATGAACACGATTCAGGCAATCAAGCGAATCAATGAGAGGGA
GCTTGAGCAAGGTCTGTCGGGAAAGGCCTCGTGGCATCACGAATACAAAG
ACAGTGCGTGGATTTTCGCTGGTGGCTTTCCATACGACCTCACGGAGGGC
GACGTGCTCTGCGTGATGTCGCAATGGGGGGAGATCGAGGACATCAACCT
CTGCCGAGACAAGGACACTGGCAAGTCGAAGGTAATAATGGCTTAGCGAA
AGTTGTACTTTTACAGGTTCTCGTATCCGCCGAGTTTATTTCAAATCGTG
TTTGAAGCCCACGACGGATCGCGTTTGTTTTCTGCCTACCGGCTGATGGC
TCCGAAATGAAGCGCTCTCCCCTCGAACGGAGGGACTTGTCTCGTGGTAG
GTCGCAGTCCCGATGATATCACCTGCTTATCAACACACGCAGGGGTTTTG
TTTCGTCAAATACGAGGACCAAAGGAGTACCATCCTGGCGGTGGACAACT
TTAACGGCATTGAGCTGCTGGGGCGCACGATAAGAGTGGACCACAAACAC
AAATATGCTCTTCCTGCGGAGGTGCGGTGAGCATGTAGCCTTCCTTTCCT
GCTCTACAAGACGAAGAGAAGGATTCGGGTCTCTTGGCGGACACCGCGCA
CCGCGCCAGCCCTTTTCGAAATAGGGAGTAGCGGCGTAATATTGATAATG
ATACTATAAACCGTAGTCCACTGCTCGTGTAATACCTTGTTTGTCTTCGT
GTTTTCCGGATGTGGTTCAAGTACGTGGTACAATCTGTGCGCCGGTTGTT
TCTTATATCAGGTACGAATAATGGATGCGAGTTCTTTTGCTACGCTGCAG
GGCCGTTATTTTCGCACGCCGGAGAACATGGCGTGGGTCCTGGTTACATA
GAGGATCTTACATAGTCCAACTAAACGCTCTGACACTCCCAGGTGAGAGA
GAAAGCCGAGAAGCTTGAGGAAGAAAGGGTAGCTCGCGGCGAGGAGCCAT
CGACTAAGGGACCGCAGTGGAGACCAGGCATTGCTTACGAGGGCAAGCAG
CTCGCGAACGAGCATAACTTCCACAAGGGTGTGGACGTGTACGCCGCACC
GGGCAAGGTGCGTGTCGCTTCCGTTACAGCAGCGTGTAGCGACGTATTCA
TTACGAAACAGACCATGAATTCGGCTCGCCACAAGCAGGCTCGTGAGAGA
CTGCGCGTCTTTTCGTCGAATCGGTATCAACTTCTCCTCGCAGGGATCCG
GATCAAGCGACGAAAGCAATCCTTCAAGGGTCGGCATGGGTGGCGAACGA
GGTGAAGAGTCCGCAGCAGCAAAAAGAGAGCGGCGAGAGGCGAAGAGGGC
ACGCAAAGAAGCGCGGAGGGAAGCGCGGGAGCGCAAGAAGCACAAGAGTG
ACAGTCACGGGAGAAAGAAGGGCGGCGAAGACTCAGCCGAAGACGCCCAC
AGCCGTAAAAACAAGAAGGGTCACAAAAAGGATAAGCGGGACGATCGGGG
AGGGCGATCCCGCGAAGACGGTGAGAGGGACAGGGGGCGCGGTGAAGGTT
CACGGAACGATCATGGTGACAGAAGGCGCGGTGATAACGGGAGATATTCT
GAACGAGGCGGTGAAGGAGGAGTCGATGCTGCTGGCGTATGGGAACGCGG
CGCTAGGATCCCCGGCGGTGAATACCACGGCTCGTTCTCCACTTCGAATG
ATGCTGTCTCAAGCCGGCCAGCAGCCCCCGCGTCCCTTGCGATCGGCAGC
GTATTGGACTGGAGGGGACTAGGGGGTCGTGGAAACGAACGTGGGGGGCG
TGGAGGAAGGGGTGGAAGGGAGGGGAGAGAAGGCAATCGTGGTAGGGGCC
GTGGTGGCCGTGGTGGCCGCGGTGACCGTGGAAGTGAAGGAATGAATTCA
ATCGGGGGAATGGACCGTCGGCGATAATCGTGCAAAAGTCTGGCTTGTTG
GTTGTTTTGTGATCACGGGGGCAAGGCGATCCCAACTAGAGGTGTTTCCT
TGTGTCCATTTCTGCACGATGTATTATTTACGGTAGCAATATCGTGCGAG
TTGGACGCCGTCCCTGAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1165:234635..236702-

>mRNA_A-nodosum_M_contig1165.18.2 ID=mRNA_A-nodosum_M_contig1165.18.2|Name=mRNA_A-nodosum_M_contig1165.18.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=1200bp|location=Sequence derived from alignment at A-nodosum_M_contig1165:234635..236702- (Ascophyllum nodosum dioecious)
ATGAACACGATTCAGGCAATCAAGCGAATCAATGAGAGGGAGCTTGAGCA
AGGTCTGTCGGGAAAGGCCTCGTGGCATCACGAATACAAAGACAGTGCGT
GGATTTTCGCTGGTGGCTTTCCATACGACCTCACGGAGGGCGACGTGCTC
TGCGTGATGTCGCAATGGGGGGAGATCGAGGACATCAACCTCTGCCGAGA
CAAGGACACTGGCAAGTCGAAGGGGTTTTGTTTCGTCAAATACGAGGACC
AAAGGAGTACCATCCTGGCGGTGGACAACTTTAACGGCATTGAGCTGCTG
GGGCGCACGATAAGAGTGGACCACAAACACAAATATGCTCTTCCTGCGGA
GGTGAGAGAGAAAGCCGAGAAGCTTGAGGAAGAAAGGGTAGCTCGCGGCG
AGGAGCCATCGACTAAGGGACCGCAGTGGAGACCAGGCATTGCTTACGAG
GGCAAGCAGCTCGCGAACGAGCATAACTTCCACAAGGGTGTGGACGTGTA
CGCCGCACCGGGCAAGGGATCCGGATCAAGCGACGAAAGCAATCCTTCAA
GGGTCGGCATGGGTGGCGAACGAGGTGAAGAGTCCGCAGCAGCAAAAAGA
GAGCGGCGAGAGGCGAAGAGGGCACGCAAAGAAGCGCGGAGGGAAGCGCG
GGAGCGCAAGAAGCACAAGAGTGACAGTCACGGGAGAAAGAAGGGCGGCG
AAGACTCAGCCGAAGACGCCCACAGCCGTAAAAACAAGAAGGGTCACAAA
AAGGATAAGCGGGACGATCGGGGAGGGCGATCCCGCGAAGACGGTGAGAG
GGACAGGGGGCGCGGTGAAGGTTCACGGAACGATCATGGTGACAGAAGGC
GCGGTGATAACGGGAGATATTCTGAACGAGGCGGTGAAGGAGGAGTCGAT
GCTGCTGGCGTATGGGAACGCGGCGCTAGGATCCCCGGCGGTGAATACCA
CGGCTCGTTCTCCACTTCGAATGATGCTGTCTCAAGCCGGCCAGCAGCCC
CCGCGTCCCTTGCGATCGGCAGCGTATTGGACTGGAGGGGACTAGGGGGT
CGTGGAAACGAACGTGGGGGGCGTGGAGGAAGGGGTGGAAGGGAGGGGAG
AGAAGGCAATCGTGGTAGGGGCCGTGGTGGCCGTGGTGGCCGCGGTGACC
GTGGAAGTGAAGGAATGAATTCAATCGGGGGAATGGACCGTCGGCGATAA
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