prot_A-nodosum_M_contig1154.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1154.1.1
Unique Nameprot_A-nodosum_M_contig1154.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length176
Homology
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BLAST of mRNA_A-nodosum_M_contig1154.1.1 vs. uniprot
Match: A0A6H5L351_9PHAE (DNMT1-RFD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L351_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.980e-12
Identity = 46/93 (49.46%), Postives = 55/93 (59.14%), Query Frame = 0 
Query:    1 FEARDIVENHEVVVETVADLSTLGI----GDATGMAQNSGEDAKEDDEGTLTAFNGDS--SFRSVEGKDTLFLKELRVRAEEWEANGRSFDRQ 87
            FE RDIVE HEVV  T+A +  L       +A GM    GED      G+    NGD+  S  SV+ KDTLFLKEL  + +EWEANGRSF R+
Sbjct:  368 FETRDIVEEHEVVAATIAGMGALSTKKKPDNAEGMLDGVGEDGP----GSWPGANGDNNGSSDSVDAKDTLFLKELATKGQEWEANGRSFVRR 456
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BLAST of mRNA_A-nodosum_M_contig1154.1.1 vs. uniprot
Match: D7G6R7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R7_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 5.550e-12
Identity = 45/93 (48.39%), Postives = 55/93 (59.14%), Query Frame = 0 
Query:    1 FEARDIVENHEVVVETVADLSTLGI----GDATGMAQNSGEDAKEDDEGTLTAFNGDSS--FRSVEGKDTLFLKELRVRAEEWEANGRSFDRQ 87
            FE RDIVE HEVV  T+A +  L       +A GM    GED      G+    NGD++    SV+ KDTLFLKEL  + +EWEANGRSF R+
Sbjct:  247 FETRDIVEEHEVVAATIAGMGALSTKKKPDNAEGMLDGGGEDGP----GSWPGANGDNNGCSDSVDAKDTLFLKELGTKGQEWEANGRSFVRR 335
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1154.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L351_9PHAE2.980e-1249.46DNMT1-RFD domain-containing protein n=1 Tax=Ectoca... [more]
D7G6R7_ECTSI5.550e-1248.39Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..176

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1154contigA-nodosum_M_contig1154:88..1893 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1154.1.1mRNA_A-nodosum_M_contig1154.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1154 88..1894 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1154.1.1 ID=prot_A-nodosum_M_contig1154.1.1|Name=mRNA_A-nodosum_M_contig1154.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=176bp
FEARDIVENHEVVVETVADLSTLGIGDATGMAQNSGEDAKEDDEGTLTAF
NGDSSFRSVEGKDTLFLKELRVRAEEWEANGRSFDRQVQRGDSGFGGGLD
VTPNGPLESPRPMGGGPRAGGKGRKSIGGGSKAGPKAPKGGHEGNADGEV
PEPGGRGFKPSGGGFEPGREDPKPSG
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