mRNA_A-nodosum_M_contig1154.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1154.1.1
Unique NamemRNA_A-nodosum_M_contig1154.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1154.1.1 vs. uniprot
Match: A0A6H5L351_9PHAE (DNMT1-RFD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L351_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.980e-12
Identity = 46/93 (49.46%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:    1 FEARDIVENHEVVVETVADLSTLGI----GDATGMAQNSGEDAKEDDEGTLTAFNGDS--SFRSVEGKDTLFLKELRVRAEEWEANGRSFDRQ 261
            FE RDIVE HEVV  T+A +  L       +A GM    GED      G+    NGD+  S  SV+ KDTLFLKEL  + +EWEANGRSF R+
Sbjct:  368 FETRDIVEEHEVVAATIAGMGALSTKKKPDNAEGMLDGVGEDGP----GSWPGANGDNNGSSDSVDAKDTLFLKELATKGQEWEANGRSFVRR 456
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BLAST of mRNA_A-nodosum_M_contig1154.1.1 vs. uniprot
Match: D7G6R7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R7_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 5.550e-12
Identity = 45/93 (48.39%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:    1 FEARDIVENHEVVVETVADLSTLGI----GDATGMAQNSGEDAKEDDEGTLTAFNGDSS--FRSVEGKDTLFLKELRVRAEEWEANGRSFDRQ 261
            FE RDIVE HEVV  T+A +  L       +A GM    GED      G+    NGD++    SV+ KDTLFLKEL  + +EWEANGRSF R+
Sbjct:  247 FETRDIVEEHEVVAATIAGMGALSTKKKPDNAEGMLDGGGEDGP----GSWPGANGDNNGCSDSVDAKDTLFLKELGTKGQEWEANGRSFVRR 335
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1154.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L351_9PHAE2.980e-1249.46DNMT1-RFD domain-containing protein n=1 Tax=Ectoca... [more]
D7G6R7_ECTSI5.550e-1248.39Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1154contigA-nodosum_M_contig1154:88..1894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G6R7
PFAMsAuxin_resp,Bromodomain,DNMT1-RFD,DUF3591,WSD
Model size531
Max annot lvl2759|Eukaryota
KEGG koko:K03125
KEGG Pathwayko03022,map03022
Hectar predicted targeting categoryother localisation
Exons3
Evalue9.1e-13
EggNOG OGsCOG5179@1|root,KOG0008@2759|Eukaryota
Descriptionnegative regulation of protein autoubiquitination
Cds size528
COG categoryK
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866558.0953422-CDS-A-nodosum_M_contig1154:87..1201680866558.0953422-CDS-A-nodosum_M_contig1154:87..120Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1154 88..120 +
1680866558.1091726-CDS-A-nodosum_M_contig1154:1006..11981680866558.1091726-CDS-A-nodosum_M_contig1154:1006..1198Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1154 1007..1198 +
1680866558.2027824-CDS-A-nodosum_M_contig1154:1590..18931680866558.2027824-CDS-A-nodosum_M_contig1154:1590..1893Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1154 1591..1893 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1154.1.1prot_A-nodosum_M_contig1154.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1154 88..1893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1154.1.1

>prot_A-nodosum_M_contig1154.1.1 ID=prot_A-nodosum_M_contig1154.1.1|Name=mRNA_A-nodosum_M_contig1154.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=176bp
FEARDIVENHEVVVETVADLSTLGIGDATGMAQNSGEDAKEDDEGTLTAF
NGDSSFRSVEGKDTLFLKELRVRAEEWEANGRSFDRQVQRGDSGFGGGLD
VTPNGPLESPRPMGGGPRAGGKGRKSIGGGSKAGPKAPKGGHEGNADGEV
PEPGGRGFKPSGGGFEPGREDPKPSG
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mRNA from alignment at A-nodosum_M_contig1154:88..1894+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1154.1.1 ID=mRNA_A-nodosum_M_contig1154.1.1|Name=mRNA_A-nodosum_M_contig1154.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1807bp|location=Sequence derived from alignment at A-nodosum_M_contig1154:88..1894+ (Ascophyllum nodosum dioecious)
TTTGAGGCCCGCGACATCGTTGAGAACCACGAGGTAATTAATGAGGTAGC
GCGAACAGAAAAGGGCAAGATAAAATATACTCGGTACTCGGTATTCAAGA
GTACCCACCCCACCCGAAGCGTATTACAGACGTTGAACCGAACCGAACCA
AACCGAACCGAACCGAACCGTATCAGTGGCTGGTATTAATATTAATCTAT
TAATAGTAGTGTGACGCGGAAGGGATGCCTTCTATGCTATTTTTAAAGAT
CATTTTCTCCTCTAATACTATTAATAAACTAATACCGGTAGGAAGATAGA
TAGGAAGGATCTCAGGGTATCGGCAGAGATGTTTCGGAGTTGGTAGGGTA
CGGTATGCCCGTTAAGTTAAACCTTTGGCAGGATAAAATATAAAATATAA
AATAGGCCGCTCACAACTATTAATACATACCTGGTATTAATAATTAATAC
GGTACGGTAACTGTCTGGCTGATCTGATCTGATTATCAACGCTAAACGTG
AAGAATCTTTTTATTTTATTTTATTAGTTCTGGCTTACGTCACCGAACGC
GTGAGAAAACGTTGAGTAACCATTGATTGTCACACGGCATTGGAGAGCTG
AACCTGTGTCGCGATTGAGAGCTTCGTCGGCTTGAACCGAGGAGAGGTCG
ATGCGTCCTCTAGGACTCTTGCGCAGGCGGTTGAAGTATTAACAGGTGTT
ATAGGGGACTGTTACTGTTACTGTTGACCTAGCGCGATGATTGGGCCCAC
CGGCAGAAAGTATTAATAGTTGTATATTAATACCAGGACAGAAGACAACG
AAAGAGAACACGAATCCTGTAGAATCATACTTGCTGAAATGACAAGTGCA
GCGCGTGATTCCCGCCCCCGCATCCTCACATCACCATGTTGCGTCTTGGC
GCCTTCGCGCCTTGGAAAGGTGGTCGTAGAGACAGTCGCGGATTTGAGCA
CCCTGGGAATTGGGGACGCGACCGGAATGGCTCAAAATTCTGGCGAGGAT
GCCAAAGAGGACGACGAAGGCACGTTGACCGCTTTCAACGGCGACAGCTC
GTTCAGATCGGTCGAAGGAAAAGACACGCTCTTTTTGAAGGAGCTCAGGG
TCAGAGCAGAGGTGCGGCACGTGGTGTTCTCTATTGTAGTGGACTACTGT
AGCACCGAGACGAGACGCCTATGCCTCAGATCGAAACGTTTTGCGTTTCT
ATTGCTTTCCTGTAGCAACAGTAGACAGAGGCAGTTTACATATACTGTAT
CTTGTTGCGTGGCCTACTCACGTTGGGGTTGTATCGGAGTCGCTTGCCCT
TTCGCCTGAGAAGCTATCCACTCGAGTAGCTTCTACGGCGATTGCCACGG
AAGGTGCCGTATCGCTCCCTCAAAATATCGTGCGGCGTTTGCGGGAGTGA
TGCGTTCATTGGGATCCGCGCGCGGCCAGGTGCTGCTCCTTTTCCCATGT
TTGGTAAGATGTTCGCGTAAGAATTCCGACGTCCCAATAAATACTATTGT
CAGGAGTGGGAGGCAAACGGCCGCTCCTTCGATCGACAAGTTCAGCGCGG
CGACTCGGGGTTCGGTGGTGGCTTGGACGTGACCCCGAATGGACCATTAG
AAAGTCCCAGACCCATGGGCGGAGGCCCCAGGGCTGGTGGGAAAGGCCGC
AAGTCCATCGGAGGAGGTTCCAAGGCTGGCCCCAAAGCCCCGAAGGGAGG
GCATGAAGGAAACGCCGACGGAGAGGTTCCCGAGCCTGGCGGACGGGGCT
TCAAGCCTAGCGGAGGAGGCTTCGAGCCTGGTAGAGAGGACCCAAAGCCG
AGCGGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1154:88..1894+

>mRNA_A-nodosum_M_contig1154.1.1 ID=mRNA_A-nodosum_M_contig1154.1.1|Name=mRNA_A-nodosum_M_contig1154.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at A-nodosum_M_contig1154:88..1894+ (Ascophyllum nodosum dioecious)
TTTGAGGCCCGCGACATCGTTGAGAACCACGAGGTGGTCGTAGAGACAGT
CGCGGATTTGAGCACCCTGGGAATTGGGGACGCGACCGGAATGGCTCAAA
ATTCTGGCGAGGATGCCAAAGAGGACGACGAAGGCACGTTGACCGCTTTC
AACGGCGACAGCTCGTTCAGATCGGTCGAAGGAAAAGACACGCTCTTTTT
GAAGGAGCTCAGGGTCAGAGCAGAGGAGTGGGAGGCAAACGGCCGCTCCT
TCGATCGACAAGTTCAGCGCGGCGACTCGGGGTTCGGTGGTGGCTTGGAC
GTGACCCCGAATGGACCATTAGAAAGTCCCAGACCCATGGGCGGAGGCCC
CAGGGCTGGTGGGAAAGGCCGCAAGTCCATCGGAGGAGGTTCCAAGGCTG
GCCCCAAAGCCCCGAAGGGAGGGCATGAAGGAAACGCCGACGGAGAGGTT
CCCGAGCCTGGCGGACGGGGCTTCAAGCCTAGCGGAGGAGGCTTCGAGCC
TGGTAGAGAGGACCCAAAGCCGAGCGGA
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