prot_A-nodosum_M_contig113.37.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig113.37.1
Unique Nameprot_A-nodosum_M_contig113.37.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length66
Homology
BLAST of mRNA_A-nodosum_M_contig113.37.1 vs. uniprot
Match: D8LG80_ECTSI (40S ribosomal protein S30 n=2 Tax=PX clade TaxID=569578 RepID=D8LG80_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.350e-35
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0
Query:    1 MGKVHGSLARAGKVKGQTPKIDKQEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 65
            MGKVHGSLARAGKVKGQTPKIDK EKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV
Sbjct:    1 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 65          
BLAST of mRNA_A-nodosum_M_contig113.37.1 vs. uniprot
Match: K0R2S3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R2S3_THAOC)

HSP 1 Score: 114 bits (284), Expect = 3.290e-31
Identity = 56/65 (86.15%), Postives = 63/65 (96.92%), Query Frame = 0
Query:    1 MGKVHGSLARAGKVKGQTPKIDKQEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 65
            MGKVHGSLARAGKVKGQTPK++ QEKKKQPRGRAKKRMQYNRR+VNVVTG+GGK++GPNSNA K+
Sbjct:   58 MGKVHGSLARAGKVKGQTPKVEAQEKKKQPRGRAKKRMQYNRRYVNVVTGMGGKKVGPNSNADKM 122          
BLAST of mRNA_A-nodosum_M_contig113.37.1 vs. uniprot
Match: A0A7S2V4V4_9STRA (Hypothetical protein n=3 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S2V4V4_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.780e-29
Identity = 56/64 (87.50%), Postives = 61/64 (95.31%), Query Frame = 0
Query:    2 GKVHGSLARAGKVKGQTPKIDKQEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 65
            GKVHGSLARAGKVKGQTPK++ QEKKK+  GRAKKRMQYNRRFVNVVTGVGGK+LGPNSNA+KV
Sbjct:   77 GKVHGSLARAGKVKGQTPKVEAQEKKKKLTGRAKKRMQYNRRFVNVVTGVGGKKLGPNSNASKV 140          
BLAST of mRNA_A-nodosum_M_contig113.37.1 vs. uniprot
Match: A0A1E7F7Q1_9STRA (40S ribosomal protein S30 n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A1E7F7Q1_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.820e-29
Identity = 55/66 (83.33%), Postives = 63/66 (95.45%), Query Frame = 0
Query:    1 MGKVHGSLARAGKVKGQTPKIDKQEK-KKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 65
            MGKVHGSLARAGKVK QTPK++KQE+ KKQPRGRAKKR+QYNRR+VNVVTG+GGKR+GPNSNA K+
Sbjct:    1 MGKVHGSLARAGKVKNQTPKVEKQEEGKKQPRGRAKKRLQYNRRYVNVVTGMGGKRVGPNSNADKM 66          
BLAST of mRNA_A-nodosum_M_contig113.37.1 vs. uniprot
Match: A0A4D9D2L7_9STRA (Ubiquitin-like domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2L7_9STRA)

HSP 1 Score: 106 bits (265), Expect = 4.380e-28
Identity = 53/64 (82.81%), Postives = 60/64 (93.75%), Query Frame = 0
Query:    2 GKVHGSLARAGKVKGQTPKIDKQEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 65
            GKVHGSLARAGKVKGQTPK++KQEK+K PRGRAKKR+ Y+RRF+NV TGVGGKRLGPNSNA K+
Sbjct:   77 GKVHGSLARAGKVKGQTPKVEKQEKRKTPRGRAKKRVLYSRRFLNVATGVGGKRLGPNSNADKM 140          
BLAST of mRNA_A-nodosum_M_contig113.37.1 vs. uniprot
Match: A0A8J2X0V5_9STRA (Hypothetical protein n=3 Tax=Pelagomonadales TaxID=54409 RepID=A0A8J2X0V5_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.070e-27
Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 0
Query:    2 GKVHGSLARAGKVKGQTPKIDKQEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNA 62
            GKVHGSLARAGKVKGQTPK++KQEKKK P GRAKKRM YNRRFVNVV GVGGKR GPNSNA
Sbjct:   91 GKVHGSLARAGKVKGQTPKVEKQEKKKLPTGRAKKRMLYNRRFVNVVAGVGGKRFGPNSNA 151          
BLAST of mRNA_A-nodosum_M_contig113.37.1 vs. uniprot
Match: A0A2P6VFJ9_9CHLO (40S ribosomal protein S30 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VFJ9_9CHLO)

HSP 1 Score: 100 bits (248), Expect = 1.750e-26
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 0
Query:    1 MGKVHGSLARAGKVKGQTPKIDKQEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNS 60
            MGKVHGSLARAGKV+GQTPK+ KQEKKK P+GRA+KR+QYNRRFVNVV G GGK+ GPNS
Sbjct:    1 MGKVHGSLARAGKVRGQTPKVPKQEKKKTPKGRARKRLQYNRRFVNVVVGFGGKKKGPNS 60          
BLAST of mRNA_A-nodosum_M_contig113.37.1 vs. uniprot
Match: A0A7S3LSY6_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LSY6_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.000e-25
Identity = 51/64 (79.69%), Postives = 58/64 (90.62%), Query Frame = 0
Query:    2 GKVHGSLARAGKVKGQTPKIDKQEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 65
            GKVHGSLARAGKVKGQTPK+ KQ+KK+ P GRAKKRMQYNRRFVNVV G  GKR+GPN+NAA++
Sbjct:   77 GKVHGSLARAGKVKGQTPKVAKQDKKRVPTGRAKKRMQYNRRFVNVVNGGMGKRVGPNNNAARL 140          
BLAST of mRNA_A-nodosum_M_contig113.37.1 vs. uniprot
Match: A0A484DSZ2_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DSZ2_BRELC)

HSP 1 Score: 98.6 bits (244), Expect = 1.370e-25
Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 0
Query:    2 GKVHGSLARAGKVKGQTPKIDKQE-KKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 65
            GKVHGSLARAGKVKGQTPK+ KQE  KK   GRAKKR QYNRRFVNVV G GGK+LGPNSNAAKV
Sbjct:   21 GKVHGSLARAGKVKGQTPKVPKQEDSKKALTGRAKKRWQYNRRFVNVVAGSGGKKLGPNSNAAKV 85          
BLAST of mRNA_A-nodosum_M_contig113.37.1 vs. uniprot
Match: A8JF66_CHLRE (40S ribosomal protein S30 n=7 Tax=cellular organisms TaxID=131567 RepID=A8JF66_CHLRE)

HSP 1 Score: 97.8 bits (242), Expect = 1.480e-25
Identity = 52/63 (82.54%), Postives = 56/63 (88.89%), Query Frame = 0
Query:    1 MGKVHGSLARAGKVKGQTPKIDKQEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAA 63
            MGKVHGSLARAGKV+GQTPK+ KQEKKK+PRGRA KRM+YNRRFVNVV G G KR GPNSN A
Sbjct:    1 MGKVHGSLARAGKVRGQTPKVPKQEKKKRPRGRAMKRMKYNRRFVNVVVGFGKKR-GPNSNPA 62          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig113.37.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG80_ECTSI1.350e-3598.4640S ribosomal protein S30 n=2 Tax=PX clade TaxID=5... [more]
K0R2S3_THAOC3.290e-3186.15Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2V4V4_9STRA1.780e-2987.50Hypothetical protein n=3 Tax=Ochrophyta TaxID=2696... [more]
A0A1E7F7Q1_9STRA1.820e-2983.3340S ribosomal protein S30 n=4 Tax=Bacillariophyta ... [more]
A0A4D9D2L7_9STRA4.380e-2882.81Ubiquitin-like domain-containing protein n=2 Tax=M... [more]
A0A8J2X0V5_9STRA2.070e-2788.52Hypothetical protein n=3 Tax=Pelagomonadales TaxID... [more]
A0A2P6VFJ9_9CHLO1.750e-2681.6740S ribosomal protein S30 n=1 Tax=Micractinium con... [more]
A0A7S3LSY6_9STRA1.000e-2579.69Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A484DSZ2_BRELC1.370e-2583.08Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A8JF66_CHLRE1.480e-2582.5440S ribosomal protein S30 n=7 Tax=cellular organis... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006846Ribosomal protein S30PFAMPF04758Ribosomal_S30coord: 3..61
e-value: 1.6E-29
score: 101.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..39
NoneNo IPR availablePANTHERPTHR1265040S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBIcoord: 2..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig113contigA-nodosum_M_contig113:358063..361941 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig113.37.1mRNA_A-nodosum_M_contig113.37.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig113 357331..361982 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig113.37.1 ID=prot_A-nodosum_M_contig113.37.1|Name=mRNA_A-nodosum_M_contig113.37.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=66bp
MGKVHGSLARAGKVKGQTPKIDKQEKKKQPRGRAKKRMQYNRRFVNVVTG
VGGKRLGPNSNAAKV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006846Ribosomal_S30