mRNA_A-nodosum_M_contig113.37.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig113.37.1 vs. uniprot
Match: D8LG80_ECTSI (40S ribosomal protein S30 n=2 Tax=PX clade TaxID=569578 RepID=D8LG80_ECTSI) HSP 1 Score: 124 bits (312), Expect = 1.410e-32 Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 3
Query: 42 MGKVHGSLARAGKVKGQTPKIDKQEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 236
MGKVHGSLARAGKVKGQTPKIDK EKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV
Sbjct: 1 MGKVHGSLARAGKVKGQTPKIDKIEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 65
BLAST of mRNA_A-nodosum_M_contig113.37.1 vs. uniprot
Match: K0R2S3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R2S3_THAOC) HSP 1 Score: 115 bits (288), Expect = 2.680e-28 Identity = 56/65 (86.15%), Postives = 63/65 (96.92%), Query Frame = 3
Query: 42 MGKVHGSLARAGKVKGQTPKIDKQEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 236
MGKVHGSLARAGKVKGQTPK++ QEKKKQPRGRAKKRMQYNRR+VNVVTG+GGK++GPNSNA K+
Sbjct: 58 MGKVHGSLARAGKVKGQTPKVEAQEKKKQPRGRAKKRMQYNRRYVNVVTGMGGKKVGPNSNADKM 122
BLAST of mRNA_A-nodosum_M_contig113.37.1 vs. uniprot
Match: A0A7S2V4V4_9STRA (Hypothetical protein n=3 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S2V4V4_9STRA) HSP 1 Score: 112 bits (281), Expect = 4.680e-27 Identity = 59/81 (72.84%), Postives = 67/81 (82.72%), Query Frame = 3
Query: 3 NLLSRQEFHPLLTM---GKVHGSLARAGKVKGQTPKIDKQEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 236
N+ H +L + GKVHGSLARAGKVKGQTPK++ QEKKK+ GRAKKRMQYNRRFVNVVTGVGGK+LGPNSNA+KV
Sbjct: 60 NIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVEAQEKKKKLTGRAKKRMQYNRRFVNVVTGVGGKKLGPNSNASKV 140
BLAST of mRNA_A-nodosum_M_contig113.37.1 vs. uniprot
Match: A0A1E7F7Q1_9STRA (40S ribosomal protein S30 n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A1E7F7Q1_9STRA) HSP 1 Score: 109 bits (272), Expect = 1.210e-26 Identity = 55/66 (83.33%), Postives = 63/66 (95.45%), Query Frame = 3
Query: 42 MGKVHGSLARAGKVKGQTPKIDKQEK-KKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 236
MGKVHGSLARAGKVK QTPK++KQE+ KKQPRGRAKKR+QYNRR+VNVVTG+GGKR+GPNSNA K+
Sbjct: 1 MGKVHGSLARAGKVKNQTPKVEKQEEGKKQPRGRAKKRLQYNRRYVNVVTGMGGKRVGPNSNADKM 66
BLAST of mRNA_A-nodosum_M_contig113.37.1 vs. uniprot
Match: A0A4D9D2L7_9STRA (Ubiquitin-like domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2L7_9STRA) HSP 1 Score: 109 bits (272), Expect = 1.030e-25 Identity = 56/81 (69.14%), Postives = 66/81 (81.48%), Query Frame = 3
Query: 3 NLLSRQEFHPLLTM---GKVHGSLARAGKVKGQTPKIDKQEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 236
N+ H +L + GKVHGSLARAGKVKGQTPK++KQEK+K PRGRAKKR+ Y+RRF+NV TGVGGKRLGPNSNA K+
Sbjct: 60 NIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVEKQEKRKTPRGRAKKRVLYSRRFLNVATGVGGKRLGPNSNADKM 140
BLAST of mRNA_A-nodosum_M_contig113.37.1 vs. uniprot
Match: A0A8J2X0V5_9STRA (Hypothetical protein n=3 Tax=Pelagomonadales TaxID=54409 RepID=A0A8J2X0V5_9STRA) HSP 1 Score: 108 bits (271), Expect = 4.920e-25 Identity = 57/78 (73.08%), Postives = 62/78 (79.49%), Query Frame = 3
Query: 3 NLLSRQEFHPLLTM---GKVHGSLARAGKVKGQTPKIDKQEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNA 227
N+ H +L + GKVHGSLARAGKVKGQTPK++KQEKKK P GRAKKRM YNRRFVNVV GVGGKR GPNSNA
Sbjct: 74 NIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVEKQEKKKLPTGRAKKRMLYNRRFVNVVAGVGGKRFGPNSNA 151
BLAST of mRNA_A-nodosum_M_contig113.37.1 vs. uniprot
Match: A0A2P6VFJ9_9CHLO (40S ribosomal protein S30 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VFJ9_9CHLO) HSP 1 Score: 101 bits (252), Expect = 8.850e-24 Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 3
Query: 42 MGKVHGSLARAGKVKGQTPKIDKQEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNS 221
MGKVHGSLARAGKV+GQTPK+ KQEKKK P+GRA+KR+QYNRRFVNVV G GGK+ GPNS
Sbjct: 1 MGKVHGSLARAGKVRGQTPKVPKQEKKKTPKGRARKRLQYNRRFVNVVVGFGGKKKGPNS 60
BLAST of mRNA_A-nodosum_M_contig113.37.1 vs. uniprot
Match: A0A7S3LSY6_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LSY6_9STRA) HSP 1 Score: 103 bits (257), Expect = 1.940e-23 Identity = 54/81 (66.67%), Postives = 64/81 (79.01%), Query Frame = 3
Query: 3 NLLSRQEFHPLLTM---GKVHGSLARAGKVKGQTPKIDKQEKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 236
N+ H +L + GKVHGSLARAGKVKGQTPK+ KQ+KK+ P GRAKKRMQYNRRFVNVV G GKR+GPN+NAA++
Sbjct: 60 NIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVAKQDKKRVPTGRAKKRMQYNRRFVNVVNGGMGKRVGPNNNAARL 140
BLAST of mRNA_A-nodosum_M_contig113.37.1 vs. uniprot
Match: A0A2R5GNZ5_9STRA (Ubiquitin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GNZ5_9STRA) HSP 1 Score: 102 bits (254), Expect = 5.910e-23 Identity = 54/82 (65.85%), Postives = 64/82 (78.05%), Query Frame = 3
Query: 3 NLLSRQEFHPLLTM---GKVHGSLARAGKVKGQTPKIDKQ-EKKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 236
N+ H +L + GKVHGSLARAGKVKGQTPK++KQ +KKK PRGRAKKR+QYNRRFVNVV GGK LGPN+NA ++
Sbjct: 60 NIQKESTLHLVLRLRGGGKVHGSLARAGKVKGQTPKVEKQGDKKKDPRGRAKKRLQYNRRFVNVVRAPGGKTLGPNNNAERI 141
BLAST of mRNA_A-nodosum_M_contig113.37.1 vs. uniprot
Match: A0A484DSZ2_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DSZ2_BRELC) HSP 1 Score: 100 bits (248), Expect = 6.540e-23 Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 3
Query: 45 GKVHGSLARAGKVKGQTPKIDKQE-KKKQPRGRAKKRMQYNRRFVNVVTGVGGKRLGPNSNAAKV 236
GKVHGSLARAGKVKGQTPK+ KQE KK GRAKKR QYNRRFVNVV G GGK+LGPNSNAAKV
Sbjct: 21 GKVHGSLARAGKVKGQTPKVPKQEDSKKALTGRAKKRWQYNRRFVNVVAGSGGKKLGPNSNAAKV 85 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig113.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig113.37.1 >prot_A-nodosum_M_contig113.37.1 ID=prot_A-nodosum_M_contig113.37.1|Name=mRNA_A-nodosum_M_contig113.37.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=66bp MGKVHGSLARAGKVKGQTPKIDKQEKKKQPRGRAKKRMQYNRRFVNVVTGback to top mRNA from alignment at A-nodosum_M_contig113:357331..361982- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig113.37.1 ID=mRNA_A-nodosum_M_contig113.37.1|Name=mRNA_A-nodosum_M_contig113.37.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4652bp|location=Sequence derived from alignment at A-nodosum_M_contig113:357331..361982- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig113:357331..361982- >mRNA_A-nodosum_M_contig113.37.1 ID=mRNA_A-nodosum_M_contig113.37.1|Name=mRNA_A-nodosum_M_contig113.37.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=198bp|location=Sequence derived from alignment at A-nodosum_M_contig113:357331..361982- (Ascophyllum nodosum dioecious)back to top |