prot_A-nodosum_M_contig1106.3.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1106.3.1
Unique Nameprot_A-nodosum_M_contig1106.3.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length515
Homology
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BLAST of mRNA_A-nodosum_M_contig1106.3.1 vs. uniprot
Match: D8LQY7_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY7_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 2.980e-8
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 0 
Query:    1 AVIGAQEGRLHESEVLLTRCLEAQKTIHGPDHPEVALVLDRLAEVIR 47
            AV+GAQ GRL E+E +L RCLEAQ+ +HGPDHPEV LVL +L ++IR
Sbjct:  740 AVVGAQRGRLGETENILRRCLEAQERLHGPDHPEVDLVLGKLHDIIR 786
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1106.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQY7_ECTSI2.980e-865.96TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..60
e-value: 7.7E-6
score: 27.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 280..296
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 135..159
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 430..469
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 336..355
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 231..515
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 409..424
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 244..264
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 495..509
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 385..408
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 299..319

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1106contigA-nodosum_M_contig1106:79772..85746 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1106.3.1mRNA_A-nodosum_M_contig1106.3.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1106 79772..85748 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1106.3.1 ID=prot_A-nodosum_M_contig1106.3.1|Name=mRNA_A-nodosum_M_contig1106.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=515bp
AVIGAQEGRLHESEVLLTRCLEAQKTIHGPDHPEVALVLDRLAEVIRAQD
ALYTVRGAADAPNNNAGLMENGDMSMTSWLDSNLTSRGSSWFDSVPSVSR
RDMVDDGDEKNADDTAPAEKVFENEVGDVTEALVEKGAGKEAPTKSGLAE
EESQTLRQGKHPAVTASTAATVPPASIPAASASAADVVDSAAAAVAVSAS
APCAVQRKKVPRVDGMTGEIRIGPHFAVDGDVGGAKEAKASSSPPTPAVG
TGTARRNSGKVRGGSGTGSLADLRSGDSSRGRSRRRRRRGKGKNKGRSKS
NSSDSSSSSISCFSANSNASKDRARKRGGGGGGGGGRRQHRHHKPQRRRR
PRGRGSNVNRTPIPAPPQGRPTSLEPFPPEKSKASRKTLVSSAITMSARA
ATSDSHSSASPTRRERERPLQHLCRQNGRRLLTLKSSLNDHDDMSMASSD
AHPSLRSNLSSTVASRSFEKGDIGTSKGMAGEGVEDVHPSSEDGGVITAS
KSSREESNCWSDGVF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf