prot_A-nodosum_M_contig1101.8.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1101.8.2
Unique Nameprot_A-nodosum_M_contig1101.8.2
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length603
Homology
BLAST of mRNA_A-nodosum_M_contig1101.8.2 vs. uniprot
Match: A0A6H5K8T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T1_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 2.330e-42
Identity = 138/430 (32.09%), Postives = 205/430 (47.67%), Query Frame = 0
Query:   18 SGLPDLREKL-QSCGTGIRWWIPLSWRLALEVLDAVRDKIDPVETARRFVNPEGLP-PLQSAGKC-----TWIARNELSRHWKTVQDCSFLPAYLKADDP-------EFALKSVLDLRESGGSLLQHP--EVVFLDVEDFALSLAPILNHKTQQKDGRGAHIFGGRKLEEQWQLAGRELLVNQGILLASFAQFLWEKP-------DEVLPNQTFDVLVKLGILLPLPRDEPGARDVYSVGGESVPPS-ADVE--EKFLVLMRLPLEASPETMSRFEAFSELQKDWGVVVKWEFDSGSTPHGLVERLVASCHSIGNVVQDTCWRRGACFVSNEKSIKSAGGTFALALHFLESTVERQTGGTLVVRAFGHRESRAVWGALRFVISSAWRLFKEFPGLGWEAWVECPYHRQLPHYLAGVKDIQGRSPGDPILP 421
            SGLP L   + +   T I   +P +W LALEV+ A+R   +P+  AR  +   GLP PL + G        +I+++ELSR W++V D       L+ D P       E AL+  L + +  G  L+    + +FLDV   +  L+PIL+HK + +             E +W L  R+ L   GIL   FA  +W +         E +    F VL+KLG+ LP+     G R + +    S P + +DV      LV+MRL    +    + F+  +       V +KWEFD    P+GL+ERL+ASCH +G V    CWR GA F S++      G         L  T   ++      + FG  +S  VW A+R+V S+   L KE+PG+ W  W++C  H     Y+A    ++ R  GDP+LP
Sbjct:  255 SGLPALIALISRQAATAIH--VPPAWDLALEVIGALRASCNPIAAARDKL---GLPNPLPADGVADVHAFAFISKDELSRKWRSVVD------NLRDDVPAAMISNWESALEGALWISDFAGHTLRVDGGDGIFLDVLWLSKCLSPILSHKLKNQP-----------FENRW-LWMRDDLAGDGILRREFALHIWRESVGEVVMESEEVAEALFSVLIKLGVALPM-----GRRTLLAHSDRSTPTAPSDVSGSNDMLVIMRLSETCNEHQRTLFDGLASKMPRDRVTLKWEFDKAGPPYGLIERLIASCHVLGEVETGACWRYGAVFQSHDMRFVE-GRNVRFYKIALSMTSYNESERVFTAKVFGPLDSERVWVAIRYVASAMINLSKEWPGVLWTGWLDCEKHPSQHLYMAS--SVEARV-GDPLLP 652          
BLAST of mRNA_A-nodosum_M_contig1101.8.2 vs. uniprot
Match: D7FVX5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVX5_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 8.580e-38
Identity = 130/400 (32.50%), Postives = 187/400 (46.75%), Query Frame = 0
Query:   38 IPLSWRLALEVLDAVRDKIDPVETARRFVNPEGLPPLQSAGKCTWIARNELSRHW----KTVQDCSFLPAYLKA-DDPEFALKSVLDLRESGGSLLQ--HPEVVFLDVEDFALSLAPILNHKTQQKDGRGAHIFGGRKLEEQWQLAGRELLVNQGILLASFAQFLWE-----KPDEVLPNQTFDVLVKLGILLPLPRDEPGARDVYSVGGESVPPSADVEEKFLVLMRLPLEASPETMSRF-EAFSELQKDWG---VVVKWEFDSGSTPHGLVERLVASCHSIGNVVQDTCWRRGACFVSNEKSIKSAGGTFALALHFLESTVERQTGG-TLVVRAFGHRESRAVWGALRFVISSAWRLFKEFPGLGWEAWVECPYHRQLPHYLAGVKDIQGRSPGDPIL 420
            +P SW LAL  LDA+RD  DP    RRF++ +    + +A   +++  + L + W    K+V      PA   A  D   A++  L + E  G +L+  H +V+FLDV   + +L PIL+HK +      +H F   +L      A ++ LV+ G+L   FA++LW+      P E + +    VL  LG+ LPL R+E   R   S    +        +  LV+MRLP            E   +L +  G   V +KW FD     HGLVER++ASCH +G+V    CWR GA F S  ++    GG   L    +    E  +G   L V  FG      +W ALR+V SS       +PG+ WE    C  H +   Y      I+ R  GDPIL
Sbjct:  581 VPPSWGLALAFLDALRDSRDPEPATRRFLHLDFDAEVGAAQGSSFMTESTLFQRWNDTVKSVAGELTSPAERMAVSDHHGAMEGALWISEFAGHILRVAHSDVIFLDVVWLSAALKPILSHKLE------SHFFPRSELT-----AMKDELVDNGVLRLKFAEYLWDLEMEAPPSEEVMDALCGVLHSLGVALPLGREE---RHTASAIDPAAAHGQIGRQDMLVIMRLPDTCEENIQGELQELVRDLSERHGGNEVTLKWRFDGAGASHGLVERVIASCHEVGSVRSGLCWRYGAVFQSYARA--DDGGLNWLYSFVIRYDEEVGSGERVLAVTMFGPTAEDRLWAALRWVASSVVNTSTGWPGVRWEGGPACAIHARGRMYFK--TPIEARI-GDPIL 961          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1101.8.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K8T1_9PHAE2.330e-4232.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVX5_ECTSI8.580e-3832.50LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 480..503

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1101contigA-nodosum_M_contig1101:112141..115163 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1101.8.2mRNA_A-nodosum_M_contig1101.8.2Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1101 107325..116578 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1101.8.2 ID=prot_A-nodosum_M_contig1101.8.2|Name=mRNA_A-nodosum_M_contig1101.8.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=603bp
MSGIQLVSSSPTLRYSDSGLPDLREKLQSCGTGIRWWIPLSWRLALEVLD
AVRDKIDPVETARRFVNPEGLPPLQSAGKCTWIARNELSRHWKTVQDCSF
LPAYLKADDPEFALKSVLDLRESGGSLLQHPEVVFLDVEDFALSLAPILN
HKTQQKDGRGAHIFGGRKLEEQWQLAGRELLVNQGILLASFAQFLWEKPD
EVLPNQTFDVLVKLGILLPLPRDEPGARDVYSVGGESVPPSADVEEKFLV
LMRLPLEASPETMSRFEAFSELQKDWGVVVKWEFDSGSTPHGLVERLVAS
CHSIGNVVQDTCWRRGACFVSNEKSIKSAGGTFALALHFLESTVERQTGG
TLVVRAFGHRESRAVWGALRFVISSAWRLFKEFPGLGWEAWVECPYHRQL
PHYLAGVKDIQGRSPGDPILPPHFRVHYGCSRARDVASRLGKVLRARKGP
WTLEAEVFVSEGAGRVGQGPDEAQDERFKEALDSLLNDREETPAEEQSAE
DGRTAAEEGCTVLELMTNFSIAGPLGMYTLYETWSPLFEIADYWREGRYG
HAIVLTIFAIGLALAVVFMVTVVLRKLRNRCGWWRPRSGRDGYEMVNMSD
RV*
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