prot_A-nodosum_M_contig1100.2.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1100.2.1
Unique Nameprot_A-nodosum_M_contig1100.2.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length249
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1100.2.1 vs. uniprot
Match: A0A6H5KYI2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYI2_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 9.380e-44
Identity = 115/279 (41.22%), Postives = 155/279 (55.56%), Query Frame = 0 
Query:    2 LLNFMKSQDFIGIPGALRYKPRPFSEKGEGLVLEKIVNL---EKTLKLSIRQPE--ECASELPSPIVM---------DPMNEDIMEGVVTLAETLQTGLLDVQADAASAIAGLTSDADFRKQLSNPRAKKASDALCYAAARLLAETEHRPARRQAVVIVANLSSIPALCRSLLESDPPLTSPKRG---------------IVEML----------RSKEDKEEEIGTRRECMRAIIGLAESQSTRNMPAMKSLLSATPSGTGAQCKKLLERLKTCKDIL 241
            +L    +Q+ + + G  RYKPR +   GEGL LE+ VN+     +++L   + E  +    LP P  M           ++ D+M+ VV LA+ L    LDVQADAA+A+AGLT+D    +QLS   A  A++A+ +AAARLL ET HRPARRQA V VANL+  P L  +LL SD                        +VE L           +    EEEIG RRECMRA++GLAES+  R+MPAM+ LLS  PSG GA+   L +RL+ C++IL
Sbjct:  311 ILRAFMNQEGVNLVGTFRYKPRTYPATGEGLALEQ-VNMAPSRNSIRLLAERGEATKTGGSLPVPASMARPQVSSSSPELDSDMMDDVVLLADMLSGSYLDVQADAAAAVAGLTTDVKLLEQLSRGAAANAANAIAHAAARLLVETRHRPARRQAAVAVANLTKTPQLRAALLASDXXXXXXXXXXXXXXXXXXXXXXXXLVESLVVLSMGRVDGSAARKSEEEIGMRRECMRALVGLAESRVVRDMPAMRLLLSTDPSGRGAKDATLTKRLEECREIL 588
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1100.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYI2_9PHAE9.380e-4441.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 52..238
e-value: 1.5E-6
score: 29.6
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 74..216

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1100contigA-nodosum_M_contig1100:58614..61425 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1100.2.1mRNA_A-nodosum_M_contig1100.2.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1100 58511..61483 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1100.2.1 ID=prot_A-nodosum_M_contig1100.2.1|Name=mRNA_A-nodosum_M_contig1100.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=249bp
MLLNFMKSQDFIGIPGALRYKPRPFSEKGEGLVLEKIVNLEKTLKLSIRQ
PEECASELPSPIVMDPMNEDIMEGVVTLAETLQTGLLDVQADAASAIAGL
TSDADFRKQLSNPRAKKASDALCYAAARLLAETEHRPARRQAVVIVANLS
SIPALCRSLLESDPPLTSPKRGIVEMLRSKEDKEEEIGTRRECMRAIIGL
AESQSTRNMPAMKSLLSATPSGTGAQCKKLLERLKTCKDILVRPPTLA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold