mRNA_A-nodosum_M_contig1100.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1100.2.1
Unique NamemRNA_A-nodosum_M_contig1100.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1100.2.1 vs. uniprot
Match: A0A6H5KYI2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYI2_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 5.950e-54
Identity = 132/301 (43.85%), Postives = 176/301 (58.47%), Query Frame = 2 
Query:   41 FLVELQLQEGDRLHFTSLFRNMLLNFMKSQDFIGIPGALRYKPRPFSEKGEGLVLEKIVNL---EKTLKLSIRQPE--ECASELPSPIVM---------DPMNEDIMEGVVTLAETLQTGLLDVQADAASAIAGLTSDADFRKQLSNPRAKKASDALCYAAARLLAETEHRPARRQAVVIVANLSSIPALCRSLLESDPPLTSPKRG---------------IVEML----------RSKEDKEEEIGTRRECMRAIIGLAESQSTRNMPAMKSLLSATPSGTGAQCKKLLERLKTCKDIL 826
            +LVE QL+EGDRLHF++LFR +L  FM +Q+ + + G  RYKPR +   GEGL LE+ VN+     +++L   + E  +    LP P  M           ++ D+M+ VV LA+ L    LDVQADAA+A+AGLT+D    +QLS   A  A++A+ +AAARLL ET HRPARRQA V VANL+  P L  +LL SD                        +VE L           +    EEEIG RRECMRA++GLAES+  R+MPAM+ LLS  PSG GA+   L +RL+ C++IL
Sbjct:  290 YLVEAQLREGDRLHFSALFREILRAFM-NQEGVNLVGTFRYKPRTYPATGEGLALEQ-VNMAPSRNSIRLLAERGEATKTGGSLPVPASMARPQVSSSSPELDSDMMDDVVLLADMLSGSYLDVQADAAAAVAGLTTDVKLLEQLSRGAAANAANAIAHAAARLLVETRHRPARRQAAVAVANLTKTPQLRAALLASDXXXXXXXXXXXXXXXXXXXXXXXXLVESLVVLSMGRVDGSAARKSEEEIGMRRECMRALVGLAESRVVRDMPAMRLLLSTDPSGRGAKDATLTKRLEECREIL 588
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1100.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYI2_9PHAE5.950e-5443.85Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1100contigA-nodosum_M_contig1100:58511..61483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size908
Hectar predicted targeting categoryother localisation
Exons5
Cds size747
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1100.2.1prot_A-nodosum_M_contig1100.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1100 58614..61425 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866493.7216208-UTR-A-nodosum_M_contig1100:58510..586131680866493.7216208-UTR-A-nodosum_M_contig1100:58510..58613Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1100 58511..58613 +
1680866493.7756102-UTR-A-nodosum_M_contig1100:61425..614831680866493.7756102-UTR-A-nodosum_M_contig1100:61425..61483Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1100 61426..61483 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866493.7306304-CDS-A-nodosum_M_contig1100:58613..586341680866493.7306304-CDS-A-nodosum_M_contig1100:58613..58634Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1100 58614..58634 +
1680866493.7402089-CDS-A-nodosum_M_contig1100:59217..595061680866493.7402089-CDS-A-nodosum_M_contig1100:59217..59506Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1100 59218..59506 +
1680866493.7487354-CDS-A-nodosum_M_contig1100:60406..606201680866493.7487354-CDS-A-nodosum_M_contig1100:60406..60620Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1100 60407..60620 +
1680866493.7572386-CDS-A-nodosum_M_contig1100:60638..607411680866493.7572386-CDS-A-nodosum_M_contig1100:60638..60741Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1100 60639..60741 +
1680866493.76743-CDS-A-nodosum_M_contig1100:61305..614251680866493.76743-CDS-A-nodosum_M_contig1100:61305..61425Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1100 61306..61425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1100.2.1

>prot_A-nodosum_M_contig1100.2.1 ID=prot_A-nodosum_M_contig1100.2.1|Name=mRNA_A-nodosum_M_contig1100.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=249bp
MLLNFMKSQDFIGIPGALRYKPRPFSEKGEGLVLEKIVNLEKTLKLSIRQ
PEECASELPSPIVMDPMNEDIMEGVVTLAETLQTGLLDVQADAASAIAGL
TSDADFRKQLSNPRAKKASDALCYAAARLLAETEHRPARRQAVVIVANLS
SIPALCRSLLESDPPLTSPKRGIVEMLRSKEDKEEEIGTRRECMRAIIGL
AESQSTRNMPAMKSLLSATPSGTGAQCKKLLERLKTCKDILVRPPTLA*
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mRNA from alignment at A-nodosum_M_contig1100:58511..61483+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1100.2.1 ID=mRNA_A-nodosum_M_contig1100.2.1|Name=mRNA_A-nodosum_M_contig1100.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2973bp|location=Sequence derived from alignment at A-nodosum_M_contig1100:58511..61483+ (Ascophyllum nodosum dioecious)
CGACCCCGATCTCATTGTTGCTGAAAACATCGAGGGTGGTTTTCTGGTTG
AATTACAACTGCAGGAGGGCGACCGTCTCCACTTTACCAGCCTCTTCCGC
AATATGCTTTTGAATTTCATGAAGGCGAGTTCGAGGAAGATCCAACAAGC
AACCGCAATAAGTAAGGGAAGTATAAGATCAATGATATTTAATAGCGTTG
TTAAAAAAGTTAACCACATAATATATTAATAAAAACTTCAAAAATCATAC
CAAATAACCACAAAACTGACTAGACACCTTAAACTTTAAAAAAATAACCA
TATCTAGAAGCCCATAACGCCGTACATCTGAGACTGATACCTCGTCGAAA
ACGCGTACATTATAAATGTGTTTATATTGTCTAAATATGTACAATCGATC
GGTCGGGGTTTTAGTTAAATCCGAGACACATACTACTTACTACCCTTCGC
ATAGATCTAAAACGCTACGGTTTAGCTGGAAGCGCGTATGAAGTTGACAT
GGGGCATGACGGGACCAATGATCTCGCCGCCAGTGATCGCATCTCTATGG
ATCTGGTGGCATTCGAAGATATCGGAGGGCAAATTGTGGATCCCTACCAC
CGTGGTACCTGAAATAAATCAAACAAAACAAAACCAAACAAAGTTTTAAC
GCCTGAATCTCCTTCGCCCGCCTTCTATTTGTCATATATACGCTTTCAAG
ATTTTAGTCTCAAGATTTTATTGGTATCCCAGGAGCTCTTCGTTACAAGC
CTAGACCTTTCTCCGAGAAAGGCGAAGGCCTGGTTCTCGAGAAAATTGTC
AACCTCGAAAAAACATTAAAGCTGAGCATAAGGCAGCCAGAGGAATGCGC
CAGTGAACTTCCGAGTCCCATTGTCATGGACCCAATGAACGAGGATATAA
TGGAGGGTGTTGTTACGCTAGCGGAGACCTTACAGACGGGCTTGCTGGAC
GTGCAGGCTGACGCTGCTTCTGCTATAGCGGGTCTCACGAGTGATGGTGA
GATCATATTACCCTCCCCGTTGTCATCTCTTAAGAGATATGGTTTCATGC
AAAAGGTACGAGAGGTAGGTTTTGAGAAGATGCACTTCGTAGCTCTGAAG
GCGTTGTTTACGATCTAGAATGCCACTGTCGAACGAAATCGCCGAAGGTT
TGTGGCAGTTCTCCAGCGGCTTGTTTTTTTCTCCGCCCCTCTTCCATGGA
GCCTCACTTCCATGGAGATCATTGCGGATGTTCCTTCTTTTACATCCTTT
TGTGGTTATTATGCAGAAAACGCAAGGAAATATCACGAAAGGGCACAGAC
AATGTAGCCCTCATTCTGCTTACTACACTCAAAGCCCACCGAAGTGACAA
CGAGTTGCTGTGAAATATGCATGGGAGATATCCGTTCTGAAAAATCTGTT
CTAAACGCACAAGGAAGACTGCCGATAAAAGAAACAGAATAATAAGCGAA
ATCGCCAGGGCCTCAACTGTTCTCGTACGCCTTACTTACTATGGTTTAAT
AAGTGATTGGTAGTCTACGTGTAATTCTTAGTATGAAATGTGTTCTGTAC
ATGAAATATTTTTGCCCAGGCATAATCAACGCCGTGTATACTGTTTATAG
TATAAGACATCTCGAACGCGTCTTTTTTTGTCGCACGAACAGGTGCGTCG
TCATTGGTTTTGATGTATTCGTTTTTTTTGCGCGCAGTTAAGACAAATTC
AGGAGTATTTTAGACGAAACCTCTTCAAAACACTACCCGTATCACGTGGA
TTGTTTGCACATCATCATTGCTATAATATATAAAAATATTTCCGGTGCTC
TCTTTTTATGTCAGCGCGTCCTTCCTGCTCGCCCCAATGCCCCGCGATGT
TGCGTGCATTGCTGCACTCCCGCCCCCCCATTTCCCCCGTGAGAAGCCGA
TTTCCGAAAGCAGCTCTCCAACCCTCGAGCAAAGAAAGCCTCCGACGCTT
TGTGTTATGCAGCAGCCCGTCTTCTTGCGGAGACCGAACACCGTCCCGCT
AGGCGTCAAGCTGTGGTTATCGTGGCCAACCTCTCTAGTATACCGGCCCT
GTGCCGGTCTCTCCTCGAATCCGACCCACCGTTGACCTCTCCCAAACGGG
GTATCGTGGACTCTCTTGTCACACTGGCGATGCTGAGATCGAAGGAAGAC
AAGGAGGAGGAGATCGGCACCAGACGGGAGTGTATGCGTGCTATAATTGG
CCTCGCTGAGTCGCAATCTACAAGGAATATGGTGAGGACAGGGAAAGCCC
TCTGTGTTTTCTCGAGCATCCCTAATGAAAAAAAAACTAGTCTGTCGACA
TTTGTCAATTTCTTGTTGCGCGGTTTCCCTGTGCACCCGTATGTTATTCG
GATTGCCGTTCTTTGCCATGATGGTTAGTCCAAATCATCAGATAGTTATA
TTGTTAATACACCCTCGCTGGAGAGCAGGACTATTCATCTTGGGGAGATG
ATGTGTTTAGTCCAAATCATCAGTTTACATTGCCCGAGTCAAGGTTGACT
GCTCTCTTGGTTTACGGTTGATTACATGGCGTTTGAAGGCTCCTGAATGT
ACAACATCGCGGAGAATATAAGCAATCGTCCTAATCATTTTACGACGGGT
TCCTCTTAAAACCCAGCCGCGTGTCTCCGCAGTATTGAATATTTACGAAC
CAAGGTATAAGCACATGAAACGGCCGAGATAGTACGAATAACCTGTCACC
CCACGCTCTTGTATCTCTTATTGTATAATGTATATATCTTACTCTTTCCC
CGTCCCGATTTCCCTTTCATATATTTTTATCATATGGTGTTCAAGCCTGC
TATGAAGTCGCTTCTCTCCGCAACGCCGAGCGGCACAGGGGCGCAGTGTA
AGAAGCTCTTGGAAAGATTGAAGACGTGCAAGGATATACTCGTGCGGCCA
CCGACCTTGGCGTAGTAGGTGAAAGTCAGGGGAAACAAAGGAGGCGTGTT
TTTTTTTAATTCGTAGCAGCGGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1100:58511..61483+

>mRNA_A-nodosum_M_contig1100.2.1 ID=mRNA_A-nodosum_M_contig1100.2.1|Name=mRNA_A-nodosum_M_contig1100.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=747bp|location=Sequence derived from alignment at A-nodosum_M_contig1100:58511..61483+ (Ascophyllum nodosum dioecious)
ATGCTTTTGAATTTCATGAAGTCTCAAGATTTTATTGGTATCCCAGGAGC
TCTTCGTTACAAGCCTAGACCTTTCTCCGAGAAAGGCGAAGGCCTGGTTC
TCGAGAAAATTGTCAACCTCGAAAAAACATTAAAGCTGAGCATAAGGCAG
CCAGAGGAATGCGCCAGTGAACTTCCGAGTCCCATTGTCATGGACCCAAT
GAACGAGGATATAATGGAGGGTGTTGTTACGCTAGCGGAGACCTTACAGA
CGGGCTTGCTGGACGTGCAGGCTGACGCTGCTTCTGCTATAGCGGGTCTC
ACGAGTGATGCCGATTTCCGAAAGCAGCTCTCCAACCCTCGAGCAAAGAA
AGCCTCCGACGCTTTGTGTTATGCAGCAGCCCGTCTTCTTGCGGAGACCG
AACACCGTCCCGCTAGGCGTCAAGCTGTGGTTATCGTGGCCAACCTCTCT
AGTATACCGGCCCTGTGCCGGTCTCTCCTCGAATCCGACCCACCGTTGAC
CTCTCCCAAACGGGGTATCGTGGAGATGCTGAGATCGAAGGAAGACAAGG
AGGAGGAGATCGGCACCAGACGGGAGTGTATGCGTGCTATAATTGGCCTC
GCTGAGTCGCAATCTACAAGGAATATGCCTGCTATGAAGTCGCTTCTCTC
CGCAACGCCGAGCGGCACAGGGGCGCAGTGTAAGAAGCTCTTGGAAAGAT
TGAAGACGTGCAAGGATATACTCGTGCGGCCACCGACCTTGGCGTAG
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