prot_A-nodosum_M_contig10966.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig10966.1.1
Unique Nameprot_A-nodosum_M_contig10966.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length86
Homology
BLAST of mRNA_A-nodosum_M_contig10966.1.1 vs. uniprot
Match: A0A535FQJ1_9CHLR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535FQJ1_9CHLR)

HSP 1 Score: 70.5 bits (171), Expect = 1.550e-12
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = 0
Query:    2 AFLEADVMEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELISKGSRGPKPDPCVFRRKHLGKVVVIIVVYVDDL 86
            AF  +++ EE+YVELPDGY+ +  +VGRL +A+YGL  + LLW K   G L   G +  K +PC+F   HL     I+  +VDD+
Sbjct:   86 AFPNSELDEEVYVELPDGYKLT-GKVGRLLRALYGLRRSPLLWQKLLSGALTELGLQAGKEEPCLFLTDHL-----IVFFFVDDI 164          
BLAST of mRNA_A-nodosum_M_contig10966.1.1 vs. uniprot
Match: A0A2N9HEX1_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HEX1_FAGSY)

HSP 1 Score: 71.2 bits (173), Expect = 1.610e-12
Identity = 35/85 (41.18%), Postives = 52/85 (61.18%), Query Frame = 0
Query:    2 AFLEADVMEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELISKGSRGPKPDPCVFRRKHLGKVVVIIVVYVDDL 86
            AFL  D++EE+Y++ P GY DS NQV RL++A+YGL  A L W  KF   +  +G      D  +F R H    + ++++YVDD+
Sbjct:  968 AFLNGDLLEEVYMQPPPGYPDSQNQVCRLRRALYGLKQAPLAWFAKFSSVVAQQGFTPSSYDSALFIR-HTSTGITLVLLYVDDM 1051          
BLAST of mRNA_A-nodosum_M_contig10966.1.1 vs. uniprot
Match: A0A8J5YQJ2_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YQJ2_9ROSI)

HSP 1 Score: 70.9 bits (172), Expect = 2.150e-12
Identity = 37/85 (43.53%), Postives = 54/85 (63.53%), Query Frame = 0
Query:    2 AFLEADVMEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELISKGSRGPKPDPCVFRRKHLGKVVVIIVVYVDDL 86
            AFL+ D+ EE+Y+ELP G+      V RLQK++YGL  A   W+ K    L+S G +  K D  +F ++  GKVV++++ YVDDL
Sbjct:  607 AFLQGDLCEEVYMELPAGFCSQEGTVCRLQKSLYGLKQASRQWNLKLTQALVSAGFQQSKFDYSLFTKRQGGKVVLLLI-YVDDL 690          
BLAST of mRNA_A-nodosum_M_contig10966.1.1 vs. uniprot
Match: A0A6H5JRC6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC6_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.870e-12
Identity = 33/85 (38.82%), Postives = 52/85 (61.18%), Query Frame = 0
Query:    2 AFLEADVMEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELISKGSRGPKPDPCVFRRKHLGKVVVIIVVYVDDL 86
            A+  A + EE++++LP G  D  +++ + ++A+YGL H+G  W       L+  G    K DPCVFR+     VV+IIV+YVDD+
Sbjct:  487 AYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKHSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDI 571          
BLAST of mRNA_A-nodosum_M_contig10966.1.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.950e-12
Identity = 35/85 (41.18%), Postives = 51/85 (60.00%), Query Frame = 0
Query:    2 AFLEADVMEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELISKGSRGPKPDPCVFRRKHLGKVVVIIVVYVDDL 86
            A+  A + EELYV + DG      +V ++++A+YGL  +G  W  +    L+  G    + DPCVFR+   GKVV IIV+YVDD+
Sbjct:  852 AYTHAKIQEELYVRIADGSGAMAGKVLKVERALYGLKQSGREWGFEAANILVDSGYEQCRADPCVFRKIVDGKVVSIIVIYVDDI 936          
BLAST of mRNA_A-nodosum_M_contig10966.1.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.980e-12
Identity = 35/85 (41.18%), Postives = 51/85 (60.00%), Query Frame = 0
Query:    2 AFLEADVMEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELISKGSRGPKPDPCVFRRKHLGKVVVIIVVYVDDL 86
            A+  A + EELYV + DG      +V ++++A+YGL  +G  W  +    L+  G    + DPCVFR+   GKVV IIV+YVDD+
Sbjct: 1405 AYTHAKIQEELYVRIADGSGAMAGKVLKVERALYGLKQSGREWGFEAANILVDSGYEQCRADPCVFRKIVDGKVVSIIVIYVDDI 1489          
BLAST of mRNA_A-nodosum_M_contig10966.1.1 vs. uniprot
Match: A0A6H5JLS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS1_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 5.350e-12
Identity = 33/85 (38.82%), Postives = 51/85 (60.00%), Query Frame = 0
Query:    2 AFLEADVMEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELISKGSRGPKPDPCVFRRKHLGKVVVIIVVYVDDL 86
            A+  A + EE+++ LP G  D  +++G+ ++A+YGL  +G  W       L+  G    K DPCVFR+     VV+IIV+YVDD+
Sbjct:  278 AYTHATLDEEIFLRLPAGCGDKSHKIGKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDM 362          
BLAST of mRNA_A-nodosum_M_contig10966.1.1 vs. uniprot
Match: A0A2N9HCU5_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HCU5_FAGSY)

HSP 1 Score: 69.7 bits (169), Expect = 5.480e-12
Identity = 35/85 (41.18%), Postives = 51/85 (60.00%), Query Frame = 0
Query:    2 AFLEADVMEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELISKGSRGPKPDPCVFRRKHLGKVVVIIVVYVDDL 86
            AFL  D++EE+Y++ P GY DS NQV RL++A+YGL  A   W  KF   +  +G      D  +F R H    + +I++YVDD+
Sbjct:  646 AFLNGDLLEEVYMQPPPGYPDSQNQVCRLRRALYGLKQAPRAWFAKFSSVVAQQGFTPSSYDSALFIR-HTSTSIALILLYVDDM 729          
BLAST of mRNA_A-nodosum_M_contig10966.1.1 vs. uniprot
Match: A0A6H5JK64_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK64_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 5.490e-12
Identity = 34/85 (40.00%), Postives = 52/85 (61.18%), Query Frame = 0
Query:    2 AFLEADVMEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELISKGSRGPKPDPCVFRRKHLGKVVVIIVVYVDDL 86
            A+  A + EE+Y+ LPDG      +  ++++A+YGL  +G  W  +    LIS G    + DPC+FR+   GKVV +IV+YVDD+
Sbjct:  872 AYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGLKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGKVVGLIVIYVDDI 956          
BLAST of mRNA_A-nodosum_M_contig10966.1.1 vs. uniprot
Match: A0A2N9J019_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J019_FAGSY)

HSP 1 Score: 69.3 bits (168), Expect = 7.130e-12
Identity = 35/85 (41.18%), Postives = 52/85 (61.18%), Query Frame = 0
Query:    2 AFLEADVMEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGGELISKGSRGPKPDPCVFRRKHLGKVVVIIVVYVDDL 86
            AFL  D++EE+Y++ P GY DS NQV RL++A+YGL  A   W  KF   +  +G      D  +F R H    +++I++YVDD+
Sbjct:   68 AFLNGDLLEEVYMQPPLGYPDSQNQVCRLRRALYGLKQAPRAWFAKFSSVVAQQGFTPSSYDSALFIR-HTSTGIILILLYVDDM 151          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10966.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A535FQJ1_9CHLR1.550e-1243.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9HEX1_FAGSY1.610e-1241.18Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5YQJ2_9ROSI2.150e-1243.53Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRC6_9PHAE2.870e-1238.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JKS3_9PHAE2.950e-1241.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE2.980e-1241.18Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLS1_9PHAE5.350e-1238.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9HCU5_FAGSY5.480e-1241.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JK64_9PHAE5.490e-1240.00CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A2N9J019_FAGSY7.130e-1241.18Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 2..86
e-value: 1.5E-12
score: 47.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10966contigA-nodosum_M_contig10966:968..1225 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10966.1.1mRNA_A-nodosum_M_contig10966.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig10966 968..1240 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig10966.1.1 ID=prot_A-nodosum_M_contig10966.1.1|Name=mRNA_A-nodosum_M_contig10966.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=86bp
MAFLEADVMEELYVELPDGYRDSPNQVGRLQKAMYGLMHAGLLWSKKFGG
ELISKGSRGPKPDPCVFRRKHLGKVVVIIVVYVDDL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2