prot_A-nodosum_M_contig1096.32.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1096.32.1
Unique Nameprot_A-nodosum_M_contig1096.32.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length189
Homology
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BLAST of mRNA_A-nodosum_M_contig1096.32.1 vs. uniprot
Match: D7FP39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP39_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 7.570e-31
Identity = 80/172 (46.51%), Postives = 95/172 (55.23%), Query Frame = 0 
Query:   25 CEHAHHLAWFLLTSACLSQGAQG-VVRHAPKTGVPL---GVHCKNVELGVLFHSTPRRAYYVEPVPGCXXXXXXXXXDPDLEARPSVATASTKRSGKEERDGPRQRSTSLLY---VPLPVPFRLDSEPYSNPDAGSPDLRFLPYMHILK-EFPRPAGVESLLKSNVTEAQFA 188
            C +  H +WFLLTSACLS+GAQG VV H  +TG      G   KNVELGVLFHS+P RAYY  P+P C          P     P      T+         P     S++    +PLPVPF L SE Y++P   SP++RF PYMH LK E P    V+ LL SNV EAQFA
Sbjct:  786 CTNVQHFSWFLLTSACLSKGAQGEVVAHGDRTGTGTAAPGAIFKNVELGVLFHSSPERAYYTAPLPDCACPSCGC--SPGSGGPPHCTRTDTRELP------PXXXXXSMVSPRSIPLPVPFCLHSEAYTDPLTESPNVRFAPYMHTLKSERPWSVEVQRLLNSNVREAQFA 949
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BLAST of mRNA_A-nodosum_M_contig1096.32.1 vs. uniprot
Match: A0A6H5KRI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI8_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 6.850e-29
Identity = 77/175 (44.00%), Postives = 94/175 (53.71%), Query Frame = 0 
Query:   25 CEHAHHLAWFLLTSACLSQ------GAQG-VVRHAPKTGVPL---GVHCKNVELGVLFHSTPRRAYYVEPVPGCXXXXXXXXXDPDLEARPSVATASTKRSGKEERDGPRQRSTSLLYVPLPVPFRLDSEPYSNPDAGSPDLRFLPYMHILK-EFPRPAGVESLLKSNVTEAQFA 188
            C +  H +WFLLTSACLS+      GAQG VV H  +TG      G   KNVELGVLFHS+P RAY+  P+P C            +     + T + +               S   +PLPVPF LDSE Y++P   SP+ RF PYMH LK + P    V+SLL SNV EAQFA
Sbjct:  521 CANVQHFSWFLLTSACLSKAPSRAAGAQGEVVAHGDRTGTGTAASGAIFKNVELGVLFHSSPERAYHTAPLPDCACPACGCSPGSGVPPH-RIRTDTLELPPXXXXXXXXXXMVSPRSIPLPVPFSLDSEAYTDPLTESPNCRFAPYMHTLKSDRPWSVEVQSLLNSNVREAQFA 694
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1096.32.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FP39_ECTSI7.570e-3146.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRI8_9PHAE6.850e-2944.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010347Tyrosyl-DNA phosphodiesterase IPFAMPF06087Tyr-DNA_phosphocoord: 28..147
e-value: 3.7E-9
score: 35.9
NoneNo IPR availableGENE3D3.30.870.10Endonuclease Chain Acoord: 21..162
e-value: 3.8E-10
score: 41.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..127
NoneNo IPR availableSUPERFAMILY56024Phospholipase D/nucleasecoord: 28..150

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1096contigA-nodosum_M_contig1096:213203..214731 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1096.32.1mRNA_A-nodosum_M_contig1096.32.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1096 213203..214951 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1096.32.1 ID=prot_A-nodosum_M_contig1096.32.1|Name=mRNA_A-nodosum_M_contig1096.32.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=189bp
GAGAGAQGQWGDAPYLLVGGGRGPCEHAHHLAWFLLTSACLSQGAQGVVR
HAPKTGVPLGVHCKNVELGVLFHSTPRRAYYVEPVPGCGCGSGCRCSDPD
LEARPSVATASTKRSGKEERDGPRQRSTSLLYVPLPVPFRLDSEPYSNPD
AGSPDLRFLPYMHILKEFPRPAGVESLLKSNVTEAQFA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010347Tdp1