prot_A-nodosum_M_contig1082.12.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1082.12.1
Unique Nameprot_A-nodosum_M_contig1082.12.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length157
Homology
BLAST of mRNA_A-nodosum_M_contig1082.12.1 vs. uniprot
Match: A0A6H5KTD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD4_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 1.920e-55
Identity = 95/142 (66.90%), Postives = 109/142 (76.76%), Query Frame = 0
Query:    2 LTFEKDAAFNRNFNDNVEFGSGPGGAISNHVNGTMTFMGSLNMTVNIADDDFGGAEGGAFFNRGDVVVDGEAVFTGNYGGRGGAIYQEQWGTFVFNSFATFKSNRCIDTFGGGIANFGGVFDFKGGSSWVDHAADNSGDGGI 143
            LTFEKDA F+ N ND + +GSGPGGAIS HV G++ FMG L MT N ADD FGGA+GGA FNRGD+VVDGEA FTGN GGRGGAI+QE+W T VFN F TF SN+C+DTFGG IAN GG      GS + D  A+NSGDGG+
Sbjct:  154 LTFEKDATFSGNLNDRLYYGSGPGGAISVHVKGSIYFMGKLTMTDNEADDYFGGAQGGAIFNRGDIVVDGEAEFTGNIGGRGGAIFQEKWATLVFNDFVTFTSNKCLDTFGGTIANIGGDVTANAGSLFFDGFAENSGDGGL 295          
BLAST of mRNA_A-nodosum_M_contig1082.12.1 vs. uniprot
Match: D7FLJ6_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ6_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 2.760e-32
Identity = 79/158 (50.00%), Postives = 95/158 (60.13%), Query Frame = 0
Query:    2 LTFEKDAAFNRN---FNDNVEFGSGPGGAISNHVNGTMTFMGSLNMTVNIADDDFGGAEGGAFFNRGDVVVDGEAVFTGNYGGRGGAIYQEQWGTFVFNSFATFKSNRCIDTFGGGIANFGGVFDFKGGSSWVDHAADNSGDGGIGGAIYNENGGVIT 156
            LTFE DA F RN     D+VE   G  GAISN  +GT+ F   L M  N AD  F G  GGA +NRG++VV+GE++F+ N    GG IYQ   GT  FN  ATF  N   D  GGG+ N GGV +   GS +  + A  SGDGG+GGAIYN N GV+T
Sbjct:  163 LTFEGDATFERNEVHTEDSVE--QGKAGAISNTGSGTILFKSKLTMKDNEADGFFEGI-GGAIYNRGEIVVEGESLFSLNTSSDGGGIYQTSIGTMTFNGAATFSENSAYDLLGGGLMNDGGVVNINAGSLFELNGASGSGDGGLGGAIYNTNAGVVT 317          
BLAST of mRNA_A-nodosum_M_contig1082.12.1 vs. uniprot
Match: D8LJ44_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ44_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.110e-30
Identity = 76/158 (48.10%), Postives = 95/158 (60.13%), Query Frame = 0
Query:    2 LTFEKDAAFNRNF---NDNVEFGSGPGGAISNHVNGTMTFMGSLNMTVNIADDDFGGAEGGAFFNRGDVVVDGEAVFTGNYGGRGGAIYQEQWGTFVFNSFATFKSNRCIDTFGGGIANFGGVFDFKGGSSWVDHAADNSGDGGIGGAIYNENGGVIT 156
            LTFE DA F RN     D+VE   G  GAISN  +GT+ F   L M  N A+  F G  GGA +NRG+++VDGE++F+ N    GG IYQ   G   FNS ATF  N   +  GGG+ N+GGV +   GS +  + A  SGDGG+GGAIYN N G +T
Sbjct:  163 LTFEGDATFERNAVHTEDSVE--QGKAGAISNTGSGTIWFKSKLTMKDNEAEGFFEGL-GGAIYNRGEIIVDGESLFSLNTASDGGGIYQTPIGKMTFNSMATFSENSAYELRGGGLMNYGGVVNINAGSLFELNGASGSGDGGLGGAIYNGNEGAVT 317          
BLAST of mRNA_A-nodosum_M_contig1082.12.1 vs. uniprot
Match: D7FQG1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG1_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 2.140e-20
Identity = 52/113 (46.02%), Postives = 68/113 (60.18%), Query Frame = 0
Query:   44 MTVNIADDDFGGAEGGAFFNRGDVVVDGEAVFTGNYGGRGGAIYQEQWGTFVFNSFATFKSNRCIDTFGGGIANFGGVFDFKGGSSWVDHAADNSGDGGIGGAIYNENGGVIT 156
            M  N  D  +GG  GGA +NRG++ V+GE++F+ N    GG IYQ   G   FNS ATF  N   +  GGG+ N GGV +   GS +  + A  + DGG GGAI+N NGGV+T
Sbjct:    1 MNENDTDGQYGGL-GGAIYNRGEITVEGESLFSENRSSDGGGIYQTSIGIMTFNSMATFFHNVAENLRGGGLMNDGGVVNINAGSLFEQNFAAANADGGRGGAIHNRNGGVVT 112          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1082.12.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KTD4_9PHAE1.920e-5566.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLJ6_ECTSI2.760e-3250.00Asn/thr-rich large protein family protein n=1 Tax=... [more]
D8LJ44_ECTSI1.110e-3048.10Asn/thr-rich large protein family protein n=1 Tax=... [more]
D7FQG1_ECTSI2.140e-2046.02Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003368Polymorphic outer membrane protein repeatTIGRFAMTIGR01376TIGR01376coord: 71..87
e-value: 0.0027
score: 15.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1082contigA-nodosum_M_contig1082:223597..225310 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1082.12.1mRNA_A-nodosum_M_contig1082.12.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1082 223597..225310 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1082.12.1 ID=prot_A-nodosum_M_contig1082.12.1|Name=mRNA_A-nodosum_M_contig1082.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=157bp
DLTFEKDAAFNRNFNDNVEFGSGPGGAISNHVNGTMTFMGSLNMTVNIAD
DDFGGAEGGAFFNRGDVVVDGEAVFTGNYGGRGGAIYQEQWGTFVFNSFA
TFKSNRCIDTFGGGIANFGGVFDFKGGSSWVDHAADNSGDGGIGGAIYNE
NGGVIT*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003368POMP_repeat