mRNA_A-nodosum_M_contig1082.12.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1082.12.1
Unique NamemRNA_A-nodosum_M_contig1082.12.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1082.12.1 vs. uniprot
Match: A0A6H5KTD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD4_9PHAE)

HSP 1 Score: 187 bits (475), Expect = 1.920e-55
Identity = 95/142 (66.90%), Postives = 109/142 (76.76%), Query Frame = 1 
Query:    4 LTFEKDAAFNRNFNDNVEFGSGPGGAISNHVNGTMTFMGSLNMTVNIADDDFGGAEGGAFFNRGDVVVDGEAVFTGNYGGRGGAIYQEQWGTFVFNSFATFKSNRCIDTFGGGIANFGGVFDFKGGSSWVDHAADNSGDGGI 429
            LTFEKDA F+ N ND + +GSGPGGAIS HV G++ FMG L MT N ADD FGGA+GGA FNRGD+VVDGEA FTGN GGRGGAI+QE+W T VFN F TF SN+C+DTFGG IAN GG      GS + D  A+NSGDGG+
Sbjct:  154 LTFEKDATFSGNLNDRLYYGSGPGGAISVHVKGSIYFMGKLTMTDNEADDYFGGAQGGAIFNRGDIVVDGEAEFTGNIGGRGGAIFQEKWATLVFNDFVTFTSNKCLDTFGGTIANIGGDVTANAGSLFFDGFAENSGDGGL 295
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BLAST of mRNA_A-nodosum_M_contig1082.12.1 vs. uniprot
Match: D7FLJ6_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ6_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 2.760e-32
Identity = 79/158 (50.00%), Postives = 95/158 (60.13%), Query Frame = 1 
Query:    4 LTFEKDAAFNRN---FNDNVEFGSGPGGAISNHVNGTMTFMGSLNMTVNIADDDFGGAEGGAFFNRGDVVVDGEAVFTGNYGGRGGAIYQEQWGTFVFNSFATFKSNRCIDTFGGGIANFGGVFDFKGGSSWVDHAADNSGDGGIGGAIYNENGGVIT 468
            LTFE DA F RN     D+VE   G  GAISN  +GT+ F   L M  N AD  F G  GGA +NRG++VV+GE++F+ N    GG IYQ   GT  FN  ATF  N   D  GGG+ N GGV +   GS +  + A  SGDGG+GGAIYN N GV+T
Sbjct:  163 LTFEGDATFERNEVHTEDSVE--QGKAGAISNTGSGTILFKSKLTMKDNEADGFFEGI-GGAIYNRGEIVVEGESLFSLNTSSDGGGIYQTSIGTMTFNGAATFSENSAYDLLGGGLMNDGGVVNINAGSLFELNGASGSGDGGLGGAIYNTNAGVVT 317
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BLAST of mRNA_A-nodosum_M_contig1082.12.1 vs. uniprot
Match: D8LJ44_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ44_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 1.110e-30
Identity = 76/158 (48.10%), Postives = 95/158 (60.13%), Query Frame = 1 
Query:    4 LTFEKDAAFNRNF---NDNVEFGSGPGGAISNHVNGTMTFMGSLNMTVNIADDDFGGAEGGAFFNRGDVVVDGEAVFTGNYGGRGGAIYQEQWGTFVFNSFATFKSNRCIDTFGGGIANFGGVFDFKGGSSWVDHAADNSGDGGIGGAIYNENGGVIT 468
            LTFE DA F RN     D+VE   G  GAISN  +GT+ F   L M  N A+  F G  GGA +NRG+++VDGE++F+ N    GG IYQ   G   FNS ATF  N   +  GGG+ N+GGV +   GS +  + A  SGDGG+GGAIYN N G +T
Sbjct:  163 LTFEGDATFERNAVHTEDSVE--QGKAGAISNTGSGTIWFKSKLTMKDNEAEGFFEGL-GGAIYNRGEIIVDGESLFSLNTASDGGGIYQTPIGKMTFNSMATFSENSAYELRGGGLMNYGGVVNINAGSLFELNGASGSGDGGLGGAIYNGNEGAVT 317
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BLAST of mRNA_A-nodosum_M_contig1082.12.1 vs. uniprot
Match: D7FQG1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG1_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 2.140e-20
Identity = 52/113 (46.02%), Postives = 68/113 (60.18%), Query Frame = 1 
Query:  130 MTVNIADDDFGGAEGGAFFNRGDVVVDGEAVFTGNYGGRGGAIYQEQWGTFVFNSFATFKSNRCIDTFGGGIANFGGVFDFKGGSSWVDHAADNSGDGGIGGAIYNENGGVIT 468
            M  N  D  +GG  GGA +NRG++ V+GE++F+ N    GG IYQ   G   FNS ATF  N   +  GGG+ N GGV +   GS +  + A  + DGG GGAI+N NGGV+T
Sbjct:    1 MNENDTDGQYGGL-GGAIYNRGEITVEGESLFSENRSSDGGGIYQTSIGIMTFNSMATFFHNVAENLRGGGLMNDGGVVNINAGSLFEQNFAAANADGGRGGAIHNRNGGVVT 112
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1082.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KTD4_9PHAE1.920e-5566.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLJ6_ECTSI2.760e-3250.00Asn/thr-rich large protein family protein n=1 Tax=... [more]
D8LJ44_ECTSI1.110e-3048.10Asn/thr-rich large protein family protein n=1 Tax=... [more]
D7FQG1_ECTSI2.140e-2046.02Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1082contigA-nodosum_M_contig1082:223597..225310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size471
Hectar predicted targeting categoryother localisation
Exons4
Cds size471
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866468.993322-CDS-A-nodosum_M_contig1082:223596..2237461680866468.993322-CDS-A-nodosum_M_contig1082:223596..223746Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1082 223597..223746 +
1680866469.002202-CDS-A-nodosum_M_contig1082:224383..2244761680866469.002202-CDS-A-nodosum_M_contig1082:224383..224476Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1082 224384..224476 +
1680866469.0146854-CDS-A-nodosum_M_contig1082:224866..2249501680866469.0146854-CDS-A-nodosum_M_contig1082:224866..224950Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1082 224867..224950 +
1680866469.0267131-CDS-A-nodosum_M_contig1082:225166..2253101680866469.0267131-CDS-A-nodosum_M_contig1082:225166..225310Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1082 225167..225310 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1082.12.1prot_A-nodosum_M_contig1082.12.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1082 223597..225310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1082.12.1

>prot_A-nodosum_M_contig1082.12.1 ID=prot_A-nodosum_M_contig1082.12.1|Name=mRNA_A-nodosum_M_contig1082.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=157bp
DLTFEKDAAFNRNFNDNVEFGSGPGGAISNHVNGTMTFMGSLNMTVNIAD
DDFGGAEGGAFFNRGDVVVDGEAVFTGNYGGRGGAIYQEQWGTFVFNSFA
TFKSNRCIDTFGGGIANFGGVFDFKGGSSWVDHAADNSGDGGIGGAIYNE
NGGVIT*
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mRNA from alignment at A-nodosum_M_contig1082:223597..225310+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1082.12.1 ID=mRNA_A-nodosum_M_contig1082.12.1|Name=mRNA_A-nodosum_M_contig1082.12.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1714bp|location=Sequence derived from alignment at A-nodosum_M_contig1082:223597..225310+ (Ascophyllum nodosum dioecious)
GACCTCACCTTCGAGAAGGATGCGGCCTTCAATAGAAACTTCAACGACAA
CGTGGAGTTTGGCTCCGGACCAGGAGGCGCCATTTCGAATCACGTGAATG
GAACCATGACCTTCATGGGTAGTCTCAACATGACCGTAAACATCGCTGAC
GTAAGTAATCGTATTATACGATGATTGGCTTATTGTTGTCTCTTCAACAA
ACGCCACACACATGTGGCGCGCTGTCGATGCCGCACCTATATAAAGCGGG
ACCTATCGCATGTGAAATGTGTGTGTATGTATTTATTGAAGTGCATATAA
CCACGCAATCCGGCCCTGTTATCCTGGTCATTCTGTGCTACTCCAATTGG
TCCTCCCGAGGGGCATTAAGGATAACTTGTTACGAGTGTGTGTGTATGTA
ATTATTAAATTGCACATAACCGCGCATTCCGGCCCCGCATCGTAGTCATT
ATATGCTACTCGCATTGGCCCTCCAAAAGAGAGAGAGGGATCAATGTGTG
CGTGAGAGAGAGTGTGTATGTGCCCTGCTCTGTCTTGTTTGTTCGACAAG
AAAGGTGCAGAAAAGCGACAGGTTTTCCAGCGGCTATTGCATTCTTAAGA
TATCAAAGCCGATAAATGTCAATATGGGCTAATTGTTGGGAACACCAGCA
GAAGGCGCGACATTCACTCAAACATTCCCCCAAACACTTTATCAGTCTTG
AAGAAAACACTTTCGCTCCCCTTACAGCTGAGTCCCATACCTCTCGCGCG
CAAACCGTGATGCGTCGGACCTTACCATATGTGTCAGGACGACTTCGGCG
GTGCCGAGGGTGGGGCTTTCTTTAACCGCGGGGACGTCGTTGTCGATGGT
GAGGCCGTGTTCACAGGCAACTATGGTGGGGTGAGTCGACAAAATAACAC
GAATTTAGGGCATGAGTTGTCGCCGTACGCATGAGTTCGTAGACATACAT
ATTACGAGCTCGTTTTGCGTCGATTCTTGCCTAATTTGGGGGGCTCAAAC
GTTATTTTCGGGTCGTCTAGCGAAAAACCGACGCGTCGCCGTTTCTTACC
TGTAGGAACATGCCAAAACTACTGTTGTTCTATTTTGTTTAGTGTGATCT
AATGTGACCAAAGTATACCGTCTTGTTTCAGAGTCAAAATGTCTCTATAG
ATATTCAGAAGGTATAGTTCTAGAGTGGAAACTCCAATCGCGTGCATGTA
TTTGAGAAGCACGCACCGTACCGCCCAATAGCTCATATGCCGGCGGCTTT
GAATATCTCCTCACCCGCAGCGCGGAGGTGCCATCTATCAAGAGCAATGG
GGCACATTTGTTTTCAACAGCTTCGCCACGTTCAAGTCCAACAGATGCAT
CGACGTGAGCGGCGCGCATTGATAGCAGTTACCTCTGTGATCGCAGAGCG
TTGCACTTGGAGATCTAATCCCGTGGACATTACGCAGAGTCTTCAATTGA
TTCAGACTAGCATAGCTTTGCCGCTCGGATGTAAGCAAATGACTTCGTTC
GTATACACGTACGAAACCATAGTTCAACTGTCTCGACGAATGTCCCCTCC
GCCTGCTCTACTCAATGTAGACCTTCGGTGGAGGCATCGCAAACTTCGGT
GGTGTATTTGACTTCAAGGGAGGTAGCTCGTGGGTTGACCATGCCGCTGA
TAACTCCGGTGACGGTGGGATAGGCGGCGCTATCTACAACGAAAATGGCG
GTGTCATTACGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1082:223597..225310+

>mRNA_A-nodosum_M_contig1082.12.1 ID=mRNA_A-nodosum_M_contig1082.12.1|Name=mRNA_A-nodosum_M_contig1082.12.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=471bp|location=Sequence derived from alignment at A-nodosum_M_contig1082:223597..225310+ (Ascophyllum nodosum dioecious)
GACCTCACCTTCGAGAAGGATGCGGCCTTCAATAGAAACTTCAACGACAA
CGTGGAGTTTGGCTCCGGACCAGGAGGCGCCATTTCGAATCACGTGAATG
GAACCATGACCTTCATGGGTAGTCTCAACATGACCGTAAACATCGCTGAC
GACGACTTCGGCGGTGCCGAGGGTGGGGCTTTCTTTAACCGCGGGGACGT
CGTTGTCGATGGTGAGGCCGTGTTCACAGGCAACTATGGTGGGCGCGGAG
GTGCCATCTATCAAGAGCAATGGGGCACATTTGTTTTCAACAGCTTCGCC
ACGTTCAAGTCCAACAGATGCATCGACACCTTCGGTGGAGGCATCGCAAA
CTTCGGTGGTGTATTTGACTTCAAGGGAGGTAGCTCGTGGGTTGACCATG
CCGCTGATAACTCCGGTGACGGTGGGATAGGCGGCGCTATCTACAACGAA
AATGGCGGTGTCATTACGTGA
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