prot_A-nodosum_M_contig108.39.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig108.39.1
Unique Nameprot_A-nodosum_M_contig108.39.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length302
Homology
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BLAST of mRNA_A-nodosum_M_contig108.39.1 vs. uniprot
Match: A0A6H5KAD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAD9_9PHAE)

HSP 1 Score: 231 bits (589), Expect = 4.340e-71
Identity = 135/309 (43.69%), Postives = 178/309 (57.61%), Query Frame = 0 
Query:    1 MQRLHPMPTNDA--WPPASKIANVRDNLLYLGSPTLDAGLQVTWGNNPAYWAQVDEPTSPRGRIWRLNMVCWLSVITTVPAPKPGLYAAFFKIRKYDIRSNLLSFSAEWKANAAGTTKQ-----GFLHTNGSPTSGSFTLQESDAIASWSHRRLYTSVDPGAWMLLHVGNVVVRRRAHALD----------------GGTEADDDGLEVVLSFGGDNPYWCSNLDVDFAAIAPLRLCWDITRVIWIGQMK----------GKSSVDGVTQGANNG-DEEGVHPQGGISPLYQVSKRLIRLILEFSQPTL 275
            M+ ++P+PT++A  WP A +I     N L+LG   LD+GL VTWG+   +W +V+EPTSPRG IW LN VCWLSV  TVPAP PG YA FF+IR+   R  LL FSAEWK  A    +      GFL T  S  +     Q+ +A  SW HR+ Y   +PG W+LLH+GN++VR  + A                  GG    + G +V +SFGG+NP W SNL+VDFAAIAPLRL WDI RV+ IG  K          G++  +G+ +      D+ G+      SPL  +   ++ L+LEFSQPTL
Sbjct:    2 MRHVYPLPTDEAAVWPRAEQIFG--HNRLHLGRRILDSGLGVTWGDGQ-HWVEVNEPTSPRGSIWHLNRVCWLSVHATVPAPPPGCYAGFFRIRQPIQRRPLLRFSAEWKVAATMAVRPAGDDFGFLSTTDSQRAEGV-RQDGEASVSWIHRQEYHEDNPGGWLLLHIGNIMVRESSEAQQSAAATEGGASSATIGTGGPAVGNRGRDVAISFGGENPNWMSNLEVDFAAIAPLRLSWDIERVLMIGNRKTDAILPPAELGQAHEEGLDRAVEAAPDDGGIGSHLCCSPLALLPHAVMTLVLEFSQPTL 306
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig108.39.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAD9_9PHAE4.340e-7143.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025886Phloem protein 2-likePFAMPF14299PP2coord: 37..174
e-value: 9.7E-9
score: 35.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 277..301
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 285..301

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig108contigA-nodosum_M_contig108:495548..500467 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig108.39.1mRNA_A-nodosum_M_contig108.39.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig108 494859..500593 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig108.39.1 ID=prot_A-nodosum_M_contig108.39.1|Name=mRNA_A-nodosum_M_contig108.39.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=302bp
MQRLHPMPTNDAWPPASKIANVRDNLLYLGSPTLDAGLQVTWGNNPAYWA
QVDEPTSPRGRIWRLNMVCWLSVITTVPAPKPGLYAAFFKIRKYDIRSNL
LSFSAEWKANAAGTTKQGFLHTNGSPTSGSFTLQESDAIASWSHRRLYTS
VDPGAWMLLHVGNVVVRRRAHALDGGTEADDDGLEVVLSFGGDNPYWCSN
LDVDFAAIAPLRLCWDITRVIWIGQMKGKSSVDGVTQGANNGDEEGVHPQ
GGISPLYQVSKRLIRLILEFSQPTLTQAFDGNSSEPEGDEGKDDSGTWRV
F*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025886PP2-like