prot_A-nodosum_M_contig1073.4.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1073.4.1
Unique Nameprot_A-nodosum_M_contig1073.4.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length1060
Homology
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BLAST of mRNA_A-nodosum_M_contig1073.4.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 8.070e-18
Identity = 85/186 (45.70%), Postives = 100/186 (53.76%), Query Frame = 0 
Query:   26 DDGPTCSNGF--PGFQTRTACCMAECGRCVGVGC-DMVNDLNFDKCCADSIEKSGEGCSVKGEAPCYLDYT---PSSTVLPYTHTWSPTGTSSPXXXXXXXXXXXXXXXXXXXXSPSDRT--CRNGFPGFQKRSACCVLGCDWCGGPGC-ETRNGLGIEKCCADVIESSGESCLVKGEAPCYVTYT 202
            + G  CS     P +    +CC+ ECG C G GC +    L  D CC  +IE+ GE CS+K EAPC +D T   PS   +P             XXXXXXXXXXXXXXXXXXXX     T  C NG PG Q  +ACC+  C  CGG GC E   GLG + CC   I   GE C +  EAPCY+  T
Sbjct:  961 EHGELCSIALEAPCYIDGVSCCLTECGECGGSGCAEYGGGLGADNCCESNIEEYGELCSIKLEAPCVVDGTVPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDVCSNGIPGIQTDNACCLAECGACGGSGCDEFGGGLGADNCCVSDIVEYGELCSIALEAPCYIDDT 1146
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1073.4.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JG29_9PHAE8.070e-1845.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006626Parallel beta-helix repeatSMARTSM00710pbh1coord: 846..867
e-value: 230.0
score: 10.6
coord: 795..816
e-value: 4800.0
score: 2.3
coord: 772..792
e-value: 7900.0
score: 0.8
coord: 824..845
e-value: 3100.0
score: 3.8
coord: 465..496
e-value: 700.0
score: 8.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..135
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 693..741
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 693..710
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 547..571
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 551..571
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 220..277
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 727..741
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 389..451
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 379..451
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 751..907

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1073contigA-nodosum_M_contig1073:43845..65577 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1073.4.1mRNA_A-nodosum_M_contig1073.4.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1073 42416..65617 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1073.4.1 ID=prot_A-nodosum_M_contig1073.4.1|Name=mRNA_A-nodosum_M_contig1073.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=1060bp
MTLRAMITAAVLITTVATLVRATTSDDGPTCSNGFPGFQTRTACCMAECG
RCVGVGCDMVNDLNFDKCCADSIEKSGEGCSVKGEAPCYLDYTPSSTVLP
YTHTWSPTGTSSPTSSPTSSPTSPPTETPSSIPSPSDRTCRNGFPGFQKR
SACCVLGCDWCGGPGCETRNGLGIEKCCADVIESSGESCLVKGEAPCYVT
YTPSPIVSLYTRTSYPTYSPTGTSSPTSSPTSSPTSSPTSSPTSSPTGTS
FSNPSPIASSPTGTPSPTSSSTFGATNLEPPISASACDELKSAIAANKRR
NYKLNINITCDETITIAKGQHVTLTSSTEAPNGKYSIGPALQFIGRTSST
SRAASLADIEGDHSMFVVEKGGSLSVKNVIFDSSPSDEEGGGKTASSPST
ETPVNGSLSTSTIDTAANDSPSTSTTTLAIDGSSSTLHTATAPNDSTMSS
LSEVGHRGVRAIYTSGKVTIENCDFVGLRYVATEPVMNGGAIFMMDVDDA
SSGSPSVICTGSTFDSYSVGGSGGAIFADGSGLLKISGSLFGKNSAGGNR
GGEDTDKTNGSGADTDVNGKNGIDPKTLSNNFANTTGIREGGTGTDSTTA
STTNIVGAGGGGRGTHTTTDTFNATTGVVKGGDAIGSITESLTNTTGAGG
TDPDITTDTFTDMTGIGEGGTGTKITTDSITAVTSADGGGGDTGTASYSD
TTTDSATYTADTGGGGEERSGGRGLGDPDTDNTTKSTSKTVGSKAGASAV
AGAGGGGSGGAIYAGPEVALNVRDTVFEDNSATDGGAVASYGGTLTNIII
SNTVITEIGFGAVVSNDPDDKTSPRGLDISGSTFKGNTGGAVATFNTNVD
VKDSIFIDNDGAVYFGTSDLEHGFKLWVDGGRFEGNGPTPPSWGASIFTG
SGDLIGHNTGDGQAISCVKLLGVNCTDETECSMAVDEATFSVTRDDTDCK
ICNENGQVIEAYNEYGQVLEMPSSSSDGIVGVGFASNDTDSASFIVAMCI
VGIVACACCASCIASAVKEIQQEKTAINNNFNTSRLCRKPLSLEQTLNTY
RETYRKGSR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006626PbH1
IPR011050Pectin_lyase_fold/virulence