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Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | Tetratricopeptide repeat domain | coord: 537..592
e-value: 7.8E-6
score: 27.5
coord: 465..536
e-value: 1.6E-17
score: 65.7 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | Tetratricopeptide repeat domain | coord: 314..464
e-value: 3.2E-50
score: 173.3
coord: 161..313
e-value: 2.1E-35
score: 124.6 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | SUPERFAMILY | 48452 | TPR-like | coord: 241..330 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF01535 | PPR | coord: 234..260
e-value: 5.7E-4
score: 20.0 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13812 | PPR_3 | coord: 322..381
e-value: 3.0E-10
score: 40.0
coord: 425..484
e-value: 2.7E-12
score: 46.6
coord: 495..554
e-value: 1.8E-9
score: 37.5 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13041 | PPR_2 | coord: 265..312
e-value: 7.0E-10
score: 39.0 |
| IPR002885 | Pentatricopeptide repeat | TIGRFAM | TIGR00756 | TIGR00756 | coord: 511..543
e-value: 4.8E-6
score: 24.4
coord: 233..267
e-value: 1.0E-5
score: 23.4
coord: 268..301
e-value: 4.0E-7
score: 27.8
coord: 440..474
e-value: 2.6E-6
score: 25.2
coord: 311..336
e-value: 8.9E-5
score: 20.4
coord: 405..439
e-value: 5.2E-6
score: 24.3
coord: 337..369
e-value: 3.3E-4
score: 18.6
coord: 370..404
e-value: 3.1E-8
score: 31.3
coord: 475..509
e-value: 2.2E-5
score: 22.3 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 231..265
score: 10.676364 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 508..542
score: 12.441133 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 403..437
score: 11.695765 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 473..507
score: 11.169622 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 266..300
score: 12.232868 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 543..577
score: 8.692369 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 438..472
score: 11.32308 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 368..402
score: 12.441133 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 88..114 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 88..113 |
| None | No IPR available | PANTHER | PTHR47942 | TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED | coord: 231..438
coord: 310..488
coord: 401..588
coord: 160..345 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_A-nodosum_M_contig1065.5.1 ID=prot_A-nodosum_M_contig1065.5.1|Name=mRNA_A-nodosum_M_contig1065.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=604bp
MKDWYKYVPNMLSGSERVPLLTPSFGLAPVFLASRSVSGPICKSASCLRG
RDVDVLWASTAGDDRLSAAAAARARVLQQQNVIADRRVKRSKEQKQRRRQ
QESRKKGHRDSLGNGLKDALYSQSRAIGDKIKRMRTNDWEGVLRELKHAE
RTLELEGFRVTMRIYATSIRHLAKCRRWREAVGVLHGIRAAGRSPNSDCL
SAAIDACRYARQWERAVSLLRQERKIGTGVDAFCYSSAIAACGNAGQWEL
AVSLLREMEASETPPNVVTFNSAITACGNAGRWREAVSLLREMESLQIKP
SPISFNSAIAACHAGHWQEALSLMREMVAKGYSPDVVTYNSAITACGGRW
EEAVSLLGEMEVEGITPDVISYSAAIKACGKGGQPEEAVSLLREMVTRNI
RPNVVTFNSAITAVGEAGQWEESVSLLREMDAEGITPDVISYSAAITACG
NGGQSSRALALLREMEARGISPNVISYSSAIAACRNGGRPTEAVSLLREM
ATKGVSPNETTFNSAITAVGDTGRWQEAMSLFREMETSGIPPSLISFNSA
IEACAIGGQSGLAVSLLEEMASKGIARDIVSYHLTIKAHDVCINVTPPSL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011990 | TPR-like_helical_dom_sf |
| IPR002885 | Pentatricopeptide_repeat |
|