mRNA_A-nodosum_M_contig1065.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1065.5.1
Unique NamemRNA_A-nodosum_M_contig1065.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1065.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1065contigA-nodosum_M_contig1065:14108..17592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G1L0
Model size2897
Max annot lvl2880.D7G1L0|-
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.95e-08
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota
Descriptionendonuclease activity
Cds size1812
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866450.7453547-UTR-A-nodosum_M_contig1065:14107..142511680866450.7453547-UTR-A-nodosum_M_contig1065:14107..14251Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1065 14108..14251 +
1680866450.766892-UTR-A-nodosum_M_contig1065:16063..160641680866450.766892-UTR-A-nodosum_M_contig1065:16063..16064Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1065 16064..16064 +
1680866450.7754478-UTR-A-nodosum_M_contig1065:16652..175921680866450.7754478-UTR-A-nodosum_M_contig1065:16652..17592Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1065 16653..17592 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866450.756652-CDS-A-nodosum_M_contig1065:14251..160631680866450.756652-CDS-A-nodosum_M_contig1065:14251..16063Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1065 14252..16063 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1065.5.1prot_A-nodosum_M_contig1065.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1065 14252..16063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1065.5.1

>prot_A-nodosum_M_contig1065.5.1 ID=prot_A-nodosum_M_contig1065.5.1|Name=mRNA_A-nodosum_M_contig1065.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=604bp
MKDWYKYVPNMLSGSERVPLLTPSFGLAPVFLASRSVSGPICKSASCLRG
RDVDVLWASTAGDDRLSAAAAARARVLQQQNVIADRRVKRSKEQKQRRRQ
QESRKKGHRDSLGNGLKDALYSQSRAIGDKIKRMRTNDWEGVLRELKHAE
RTLELEGFRVTMRIYATSIRHLAKCRRWREAVGVLHGIRAAGRSPNSDCL
SAAIDACRYARQWERAVSLLRQERKIGTGVDAFCYSSAIAACGNAGQWEL
AVSLLREMEASETPPNVVTFNSAITACGNAGRWREAVSLLREMESLQIKP
SPISFNSAIAACHAGHWQEALSLMREMVAKGYSPDVVTYNSAITACGGRW
EEAVSLLGEMEVEGITPDVISYSAAIKACGKGGQPEEAVSLLREMVTRNI
RPNVVTFNSAITAVGEAGQWEESVSLLREMDAEGITPDVISYSAAITACG
NGGQSSRALALLREMEARGISPNVISYSSAIAACRNGGRPTEAVSLLREM
ATKGVSPNETTFNSAITAVGDTGRWQEAMSLFREMETSGIPPSLISFNSA
IEACAIGGQSGLAVSLLEEMASKGIARDIVSYHLTIKAHDVCINVTPPSL
RSA*
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mRNA from alignment at A-nodosum_M_contig1065:14108..17592+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1065.5.1 ID=mRNA_A-nodosum_M_contig1065.5.1|Name=mRNA_A-nodosum_M_contig1065.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3485bp|location=Sequence derived from alignment at A-nodosum_M_contig1065:14108..17592+ (Ascophyllum nodosum dioecious)
CCCATTTCGACGTTCCGACCGTAGCTTCTAGCGGGATTAGTTTCCTGGTG
AGATGTTACTAGGACCGAGATTGCTCATAATACTCACCATTGCGTGGTGT
TTGGAATAATCGTCTGCGTGTAAGTTCACACTCCTCCAGTAATAATGAAA
GATTGGTACAAGTACGTCCCTAACATGCTTTCCGGCAGTGAGCGGGTGCC
GTTGCTTACACCGTCGTTCGGCCTAGCACCAGTTTTCCTGGCATCGAGGA
GCGTGTCGGGACCCATATGTAAATCAGCTTCATGCTTGCGGGGCAGAGAC
GTAGATGTTTTGTGGGCGTCAACAGCCGGCGACGACAGACTGTCGGCTGC
AGCTGCAGCGAGAGCGCGTGTCCTTCAACAACAAAACGTTATCGCTGATC
GAAGAGTAAAGCGATCGAAGGAGCAGAAGCAACGGCGGCGACAGCAGGAG
TCCAGAAAAAAAGGGCATCGAGATTCTCTAGGGAATGGCCTGAAGGATGC
GCTTTACTCTCAGTCGCGAGCCATCGGGGACAAGATCAAACGCATGCGGA
CGAACGACTGGGAGGGTGTGCTCCGCGAGCTGAAGCATGCGGAGCGCACG
CTGGAGCTGGAGGGTTTCAGGGTCACCATGCGCATTTACGCCACCTCCAT
ACGGCACCTGGCGAAGTGCAGACGATGGAGAGAGGCCGTGGGTGTCCTTC
ACGGCATCCGAGCTGCGGGTAGATCTCCAAACAGTGACTGCCTGAGCGCC
GCCATTGACGCGTGCAGGTACGCGAGACAGTGGGAGCGGGCCGTGTCTCT
GCTGCGGCAAGAGCGAAAAATCGGGACTGGTGTGGACGCCTTCTGCTACA
GCTCCGCGATAGCAGCTTGCGGGAACGCAGGCCAGTGGGAGCTGGCCGTT
TCTTTGCTGAGGGAGATGGAAGCTTCTGAGACTCCCCCAAACGTGGTGAC
TTTCAACTCAGCCATCACAGCGTGCGGCAACGCGGGCCGGTGGCGGGAGG
CCGTGTCCCTCTTGCGGGAGATGGAGTCGCTGCAGATCAAACCCTCGCCG
ATAAGCTTCAACTCCGCAATTGCCGCTTGCCATGCGGGGCACTGGCAGGA
GGCGTTGTCTCTCATGAGGGAGATGGTTGCGAAGGGATATTCACCAGATG
TGGTGACATACAACTCGGCGATCACAGCATGCGGTGGGCGATGGGAGGAG
GCCGTTTCACTGCTGGGAGAAATGGAGGTCGAGGGCATTACCCCGGACGT
AATATCGTACTCCGCAGCGATTAAGGCTTGCGGCAAGGGTGGTCAGCCGG
AAGAAGCCGTGTCTTTGCTGAGGGAGATGGTGACACGGAATATCCGCCCG
AATGTGGTGACTTTCAATTCGGCGATCACAGCTGTTGGTGAAGCGGGCCA
ATGGGAGGAGTCCGTTTCTCTTTTGCGGGAGATGGATGCCGAAGGTATCA
CGCCTGACGTCATTTCATACTCGGCAGCCATCACGGCATGTGGCAACGGA
GGCCAGTCGAGCCGAGCTCTTGCGCTGTTAAGAGAGATGGAAGCTCGAGG
CATCTCCCCAAATGTCATCTCTTATTCTTCAGCCATTGCCGCATGCAGGA
ACGGAGGGCGGCCGACAGAGGCCGTGTCATTGTTGAGAGAAATGGCGACG
AAAGGCGTCAGCCCGAACGAGACGACTTTTAACTCGGCCATTACGGCCGT
TGGCGATACGGGACGGTGGCAGGAGGCGATGTCGCTATTCAGAGAGATGG
AAACCTCGGGTATTCCTCCGTCGCTAATAAGCTTCAACTCCGCGATCGAG
GCGTGCGCCATCGGCGGTCAATCTGGGCTAGCTGTGTCTCTATTGGAGGA
GATGGCATCGAAAGGAATTGCCCGAGACATTGTCAGCTACCATTTGACCA
TTAAAGCGCACGACGTGTGTATCAACGTCACGCCACCAAGCCTACGAAGC
GCATGAGGTGAGACCTTGCCTCTTGGAGTTCCGATCAACGTTGCTCCAGG
TAAATATAACATGTAGTCCAGACGGGCTAGGTGGCCACGAGCTATGCCGA
GTCTTTTATTTGCGGTCTAGAAGTTAATCCGTTCTTCCCAGCTTGCGTTC
TTAACGTTCTAGTTATCATGGCTCCTTCGAACCGGACTGAGCTGTCGCAT
CTTGTTGGCTGGGGACTGTCTGGAATGCTCGTGCGCGACTCGGCCATACG
TCGCCCAGGCTCGTTCTAGCGATTGCTCGGGTCGAGAGTAACCTTGACGT
TGAAAATGTGTCCCGTGTAATTTTTTCGAGTGTTCCACCGAAGCGAAACT
GATGTAAGGCTGGTAGCCGTGTCATCGCAGTAATAAATGTAATCTATAGT
TCGTTTCGCGCAGCTGAATCAACGTGGGATCCAAACTTTGAAGCAGCTTT
TGACCCCTCAGGCGGCCTTGATGATCTCTCCCACGAAGTAAATAGTTCCT
CAATGGCCTCCTAGCTGATTCCCGAAAACGCACTCCCTTGCTCTCATCGT
TCCATTTCCTCCTTGTCTGGGTTTCGCTCTTGCCGTTTGAGTCAGTTTTC
AAGCGCAAAGGATGGCCAACGGCCCTCGACAACTGTGGAAGGTGCCTGTG
GGAGGGTGAAGTACCTCGTTTACCCTGGTACCGTTTTGGTGACGAACGTA
CGCGACGCCCTACCCCCTGAAGGACAAGGTAGCTCCTCAAGAGCCGCGGT
GGACAATCACCTGCGAGGCCATAGTAAATTCGATAGGTCGTTCGTAATGC
ATCGAATCGACCCGAAGGATGACTTCAGTTATGTATTTGACGTGTATTGA
AAGTAGAATCAACGGGTGTAGACTGTAATAGTAGGATTGAAACGAAAAGA
TAGAGCGTATTCACACGAAAGCAAAGCGCCCCGTTTTCGCTTCAACCGTT
GCCGCATGGATTACTTTGTATAAATAGTTGGCTTGCTGCATGTCATTTTG
TGGCGTATGTCAAGGGTTGGGTTGTCCATCCTTGTGTAGTGTATTGCTGT
AAGTACGAGGGGGAAAGTGAGACAAGTTTGCAAGCCTGAGTGATTTTTAA
CTAGCATCCCACGGCCTCGTTGGCATTGTGTCATAGTTCCCACCGTGTTT
GGTTCCATCCCCGGCAGCCATCACTGTCGCTCCCCCGGAAATTGGTAAAA
GGTGGCCCACTCGAGAGAAAAAAATAAATCAGGCAACCTTCCATCTGAAC
GATGTTGGTGGTCTCATGGTTCTTTTGTAATATATCGGTTCTCTATCGGC
GAGGTCGAGCCCCAACGCCCGCCTCTCGCCGTTGATTACACATCACAGTG
AAGATAATTTGTTATTTGTTTTTTAAAGTTGTGATCGGCGGCATTGTAGA
GGCTGCAAAGACAAAGCTTGTAAAAAAGACAGGATGCGCAGCTACTTTCA
GCCAATCATTTTTTGTTTCACTTTTCCGTCTAAGTCGAGGTGTGCCTTCC
ATAGATCTGATTCAACTTTTCGATGAATATCGGGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1065:14108..17592+

>mRNA_A-nodosum_M_contig1065.5.1 ID=mRNA_A-nodosum_M_contig1065.5.1|Name=mRNA_A-nodosum_M_contig1065.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1812bp|location=Sequence derived from alignment at A-nodosum_M_contig1065:14108..17592+ (Ascophyllum nodosum dioecious)
ATGAAAGATTGGTACAAGTACGTCCCTAACATGCTTTCCGGCAGTGAGCG
GGTGCCGTTGCTTACACCGTCGTTCGGCCTAGCACCAGTTTTCCTGGCAT
CGAGGAGCGTGTCGGGACCCATATGTAAATCAGCTTCATGCTTGCGGGGC
AGAGACGTAGATGTTTTGTGGGCGTCAACAGCCGGCGACGACAGACTGTC
GGCTGCAGCTGCAGCGAGAGCGCGTGTCCTTCAACAACAAAACGTTATCG
CTGATCGAAGAGTAAAGCGATCGAAGGAGCAGAAGCAACGGCGGCGACAG
CAGGAGTCCAGAAAAAAAGGGCATCGAGATTCTCTAGGGAATGGCCTGAA
GGATGCGCTTTACTCTCAGTCGCGAGCCATCGGGGACAAGATCAAACGCA
TGCGGACGAACGACTGGGAGGGTGTGCTCCGCGAGCTGAAGCATGCGGAG
CGCACGCTGGAGCTGGAGGGTTTCAGGGTCACCATGCGCATTTACGCCAC
CTCCATACGGCACCTGGCGAAGTGCAGACGATGGAGAGAGGCCGTGGGTG
TCCTTCACGGCATCCGAGCTGCGGGTAGATCTCCAAACAGTGACTGCCTG
AGCGCCGCCATTGACGCGTGCAGGTACGCGAGACAGTGGGAGCGGGCCGT
GTCTCTGCTGCGGCAAGAGCGAAAAATCGGGACTGGTGTGGACGCCTTCT
GCTACAGCTCCGCGATAGCAGCTTGCGGGAACGCAGGCCAGTGGGAGCTG
GCCGTTTCTTTGCTGAGGGAGATGGAAGCTTCTGAGACTCCCCCAAACGT
GGTGACTTTCAACTCAGCCATCACAGCGTGCGGCAACGCGGGCCGGTGGC
GGGAGGCCGTGTCCCTCTTGCGGGAGATGGAGTCGCTGCAGATCAAACCC
TCGCCGATAAGCTTCAACTCCGCAATTGCCGCTTGCCATGCGGGGCACTG
GCAGGAGGCGTTGTCTCTCATGAGGGAGATGGTTGCGAAGGGATATTCAC
CAGATGTGGTGACATACAACTCGGCGATCACAGCATGCGGTGGGCGATGG
GAGGAGGCCGTTTCACTGCTGGGAGAAATGGAGGTCGAGGGCATTACCCC
GGACGTAATATCGTACTCCGCAGCGATTAAGGCTTGCGGCAAGGGTGGTC
AGCCGGAAGAAGCCGTGTCTTTGCTGAGGGAGATGGTGACACGGAATATC
CGCCCGAATGTGGTGACTTTCAATTCGGCGATCACAGCTGTTGGTGAAGC
GGGCCAATGGGAGGAGTCCGTTTCTCTTTTGCGGGAGATGGATGCCGAAG
GTATCACGCCTGACGTCATTTCATACTCGGCAGCCATCACGGCATGTGGC
AACGGAGGCCAGTCGAGCCGAGCTCTTGCGCTGTTAAGAGAGATGGAAGC
TCGAGGCATCTCCCCAAATGTCATCTCTTATTCTTCAGCCATTGCCGCAT
GCAGGAACGGAGGGCGGCCGACAGAGGCCGTGTCATTGTTGAGAGAAATG
GCGACGAAAGGCGTCAGCCCGAACGAGACGACTTTTAACTCGGCCATTAC
GGCCGTTGGCGATACGGGACGGTGGCAGGAGGCGATGTCGCTATTCAGAG
AGATGGAAACCTCGGGTATTCCTCCGTCGCTAATAAGCTTCAACTCCGCG
ATCGAGGCGTGCGCCATCGGCGGTCAATCTGGGCTAGCTGTGTCTCTATT
GGAGGAGATGGCATCGAAAGGAATTGCCCGAGACATTGTCAGCTACCATT
TGACCATTAAAGCGCACGACGTGTGTATCAACGTCACGCCACCAAGCCTA
CGAAGCGCATGA
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