prot_A-nodosum_M_contig1054.6.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1054.6.2
Unique Nameprot_A-nodosum_M_contig1054.6.2
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length263
Homology
BLAST of mRNA_A-nodosum_M_contig1054.6.2 vs. uniprot
Match: D8LNC5_ECTSI (Nuclear nucleic acid-binding protein C1D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC5_ECTSI)

HSP 1 Score: 239 bits (610), Expect = 4.100e-75
Identity = 121/163 (74.23%), Postives = 137/163 (84.05%), Query Frame = 0
Query:    1 MADESESKKGMESLNNFERALGHVRNSVQPLTQMSRDEVGACISPADRAKLNLQVAYGVTSLFYMFLRTQGVSPATHPVKAELDRIRGYFNRLKKVGKPPEQRTMKVDAAATRRFIDNALSGDRTWHNAKTTDSKEAQRRRAEAGIGRSLPAGQPENCTSPAA 163
            MA  SE  KG+ESL NFERALGHVRNSV+PLT MSR+EVG C+S  DRA LNLQVAYGV+SLFYMFL+TQGVSP+THPVK ELDRIRGYF RLK VGKPPEQRT+KVD  A+RRFI+ ALSGD  W NAK TD K AQ++RA AGIGR+ PAGQPE+ ++ AA
Sbjct:    1 MAGASEESKGVESLKNFERALGHVRNSVRPLTLMSREEVGGCVSAKDRATLNLQVAYGVSSLFYMFLKTQGVSPSTHPVKGELDRIRGYFGRLKNVGKPPEQRTLKVDQDASRRFINAALSGDSVWQNAKGTDPKSAQQKRASAGIGRANPAGQPEDFSAQAA 163          
BLAST of mRNA_A-nodosum_M_contig1054.6.2 vs. uniprot
Match: UPI001F04DAC0 (nuclear nucleic acid-binding protein C1D-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04DAC0)

HSP 1 Score: 94.4 bits (233), Expect = 2.220e-20
Identity = 50/135 (37.04%), Postives = 80/135 (59.26%), Query Frame = 0
Query:   13 SLNNFERALGHVRNSVQPLTQMSRDEVGACISPADRAKLNLQVAYGVTSLFYMFLRTQGVSPATHPVKAELDRIRGYFNRLKKVGKPPEQRTMKVDAAATRRFIDNALSGDRTWH-------NAKTTDSKEAQRR 140
            ++ +F  + G V  +++PL + S DE+   +   DRAKL+L V YG+ ++F+++L TQGV+P  H VK ELDRI+ Y  ++K V +  ++ +MK+D  A RRF+  AL+  +           AKTT  K   +R
Sbjct:   18 AMKDFHHSFGSVEETLEPLLRSSNDELHEKLDVLDRAKLDLMVVYGINTMFWIYLITQGVNPKEHGVKHELDRIKNYMKKVKDVSER-KKASMKIDKDAARRFVKGALANPKASEVVSDKEKRAKTTKQKNKNKR 151          
BLAST of mRNA_A-nodosum_M_contig1054.6.2 vs. uniprot
Match: A0A835ZH36_9STRA (Nuclear nucleic acid-binding protein C1D (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH36_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 3.730e-20
Identity = 47/110 (42.73%), Postives = 75/110 (68.18%), Query Frame = 0
Query:   14 LNNFERALGHVRNSVQPLTQMSRDEVGACISPADRAKLNLQVAYGVTSLFYMFLRTQGVSPATHPVKAELDRIRGYFNRLKKVGKPPEQRTMKVDAAATRRFIDNALSGD 123
            L N  +AL ++++ ++PLT+ +R+E+ + ++  + AKLN  +AYG++SL+YM LRT+G     H VK ELDRI+G   RL+ V  P  QR + V+ AA +RFI + L+G+
Sbjct:   25 LTNLHKALHNLKSKLRPLTETTREELASQVTKQEMAKLNAAMAYGISSLYYMLLRTKGCDTTDHGVKKELDRIKGAMGRLQMVKVP--QRGIVVNVAAAQRFIKHGLAGN 132          
BLAST of mRNA_A-nodosum_M_contig1054.6.2 vs. uniprot
Match: C1D_XENLA (Nuclear nucleic acid-binding protein C1D n=2 Tax=Xenopus TaxID=8353 RepID=C1D_XENLA)

HSP 1 Score: 91.7 bits (226), Expect = 1.770e-19
Identity = 45/104 (43.27%), Postives = 70/104 (67.31%), Query Frame = 0
Query:   17 FERALGHVRNSVQPLTQMSRDEVGACISPADRAKLNLQVAYGVTSLFYMFLRTQGVSPATHPVKAELDRIRGYFNRLKKVGKPPEQRTMKVDAAATRRFIDNAL 120
            FE ++G V   ++ +  +SR E+   I P ++AKL+L  AY + SLF+++L TQG++P  HPVK EL+RIRGY NR+K++     ++  ++D  A RRFI +AL
Sbjct:   22 FENSVGSVDEMLKKMMSVSRSELLQKIEPLEQAKLDLVSAYTLNSLFWIYLTTQGINPKEHPVKEELERIRGYMNRVKEI--TDRKKAARLDKGAARRFIKHAL 123          
BLAST of mRNA_A-nodosum_M_contig1054.6.2 vs. uniprot
Match: A0A2D4BWA5_PYTIN (Nuclear nucleic acid-binding protein C1D n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BWA5_PYTIN)

HSP 1 Score: 92.0 bits (227), Expect = 2.900e-19
Identity = 50/132 (37.88%), Postives = 84/132 (63.64%), Query Frame = 0
Query:   11 MESLNNFERALGHVRNSVQPLTQMSRDEVGACISPADRAKLNLQVAYGVTSLFYMFLRTQGVSPA----THPVKAELDRIRGYFNRLKKVGKPPEQRTMKVDAAATRRFIDNALSGDRTWHNAKTTDSKEAQ 138
            +E+L + ++ L  V   +Q L   S +E  A +SP ++AK+ + +AY + +L Y++L+TQGVS      TH VK ELDR++G+  ++K   +  +  T+K+D  A++RFI+NALSGD+ + +AK     EA+
Sbjct:    6 VEALTSVDQTLAAVEEHLQVLKNKSLEEFLAELSPIEKAKVQVSLAYSINALLYVYLKTQGVSSKDIRQTH-VKQELDRVKGFIKKIKDTEELAKGPTLKLDKEASQRFINNALSGDQVYVDAKNARDAEAK 136          
BLAST of mRNA_A-nodosum_M_contig1054.6.2 vs. uniprot
Match: R1DEY4_EMIHU (Nuclear nucleic acid-binding protein C1D n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DEY4_EMIHU)

HSP 1 Score: 91.3 bits (225), Expect = 3.740e-19
Identity = 46/109 (42.20%), Postives = 70/109 (64.22%), Query Frame = 0
Query:   16 NFERALGHVRNSVQPLTQMSRDEVGACISPADRAKLNLQVAYGVTSLFYMFLRTQGVSPATHPVKAELDRIRGYFNRLKKVGKPPE--QRTMKVDAAATRRFIDNALSG 122
            NFER LG +   V+ L +    E+   + P + A+L+L VAY + +LFYM+L+TQG+  A HPV AEL+RI+GY  +++   +  E  QR   ++A+A +RFI +AL G
Sbjct:   25 NFERGLGDIEERVRRLQRAPWAELCGGLPPLESARLHLMVAYTINTLFYMYLKTQGIPSANHPVLAELERIKGYIRKVRAASQEAEASQRQASLNASAAKRFIVHALGG 133          
BLAST of mRNA_A-nodosum_M_contig1054.6.2 vs. uniprot
Match: A0A7S3W1R2_EMIHU (Nuclear nucleic acid-binding protein C1D (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3W1R2_EMIHU)

HSP 1 Score: 91.3 bits (225), Expect = 4.670e-19
Identity = 46/109 (42.20%), Postives = 70/109 (64.22%), Query Frame = 0
Query:   16 NFERALGHVRNSVQPLTQMSRDEVGACISPADRAKLNLQVAYGVTSLFYMFLRTQGVSPATHPVKAELDRIRGYFNRLKKVGKPPE--QRTMKVDAAATRRFIDNALSG 122
            NFER LG +   V+ L +    E+   + P + A+L+L VAY + +LFYM+L+TQG+  A HPV AEL+RI+GY  +++   +  E  QR   ++A+A +RFI +AL G
Sbjct:   31 NFERGLGDIEERVRRLQRAPWAELCGGLPPLESARLHLMVAYTINTLFYMYLKTQGIPSANHPVLAELERIKGYIRKVRAASQEAEASQRQASLNASAAKRFIVHALGG 139          
BLAST of mRNA_A-nodosum_M_contig1054.6.2 vs. uniprot
Match: A0A2R2MU34_LINUN (Nuclear nucleic acid-binding protein C1D n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A2R2MU34_LINUN)

HSP 1 Score: 91.7 bits (226), Expect = 5.780e-19
Identity = 59/178 (33.15%), Postives = 101/178 (56.74%), Query Frame = 0
Query:   12 ESLNNFERALGHVRNSVQPLTQMSRDEVGACISPADRAKLNLQVAYGVTSLFYMFLRTQGVSPATHPVKAELDRIRGYFNRLKKVGKPPEQRTMKVDAAATRRFIDNALSGDRTWH--NAKTTDSKEAQRRRAEAGIGRSLPAGQPENCTSPAAWKPRENPPATSGKRKHQTPAVTTG 187
            + L++F+ +L  V ++++PL     +EV   ++P D AK+NL  AY V SLF+ +L  +G +P  HPVK ELDRIRGY NR+K++ +  +++  K+D  A++RF+ +AL     W   +AK +  K+     ++A   R  P  + +        +  E+  + SGK++ +T    TG
Sbjct:   18 DQLSSFDDSLTKVEDTLKPLLMTPLNEVHEKLNPLDCAKVNLVAAYAVNSLFWTYLNVRGENPKEHPVKQELDRIRGYMNRVKEIQE--KEKAPKLDKPASKRFVKSAL-----WQAAHAKASAQKDDGASTSQADTSRLQPQPKRQRLN-----EQNESSKSESGKKEKRTAKCNTG 183          
BLAST of mRNA_A-nodosum_M_contig1054.6.2 vs. uniprot
Match: A0A3B4A2J3_9GOBI (Nuclear nucleic acid-binding protein C1D n=2 Tax=Oxudercinae TaxID=497678 RepID=A0A3B4A2J3_9GOBI)

HSP 1 Score: 89.7 bits (221), Expect = 1.230e-18
Identity = 46/126 (36.51%), Postives = 78/126 (61.90%), Query Frame = 0
Query:   12 ESLNNFERALGHVRNSVQPLTQMSRDEVGACISPADRAKLNLQVAYGVTSLFYMFLRTQGVSPATHPVKAELDRIRGYFNRLKKVGKPPEQRTMKVDAAATRRFIDNALSGDRTWHNAKTTDSKEA 137
            E L  F+ A+  V+N +  L  M R+++   + P D+AKL+L   Y + SLF+M+L T+G++P  H +K EL+RIR Y N++K++    +++  ++D  A  RF+ NAL      ++AK + SK+A
Sbjct:   16 EQLTGFDSAVSSVKNMLDTLISMPRNDLLQKLDPLDQAKLDLMSVYTLNSLFWMYLVTRGINPRDHGIKQELERIRTYMNKVKEI--TDKKKAARLDKGAASRFLRNALYDPEEKNSAKKSASKKA 139          
BLAST of mRNA_A-nodosum_M_contig1054.6.2 vs. uniprot
Match: G5BNU9_HETGA (Nuclear nucleic acid-binding protein C1D n=1 Tax=Heterocephalus glaber TaxID=10181 RepID=G5BNU9_HETGA)

HSP 1 Score: 89.0 bits (219), Expect = 1.680e-18
Identity = 45/122 (36.89%), Postives = 78/122 (63.93%), Query Frame = 0
Query:   12 ESLNNFERALGHVRNSVQPLTQMSRDEVGACISPADRAKLNLQVAYGVTSLFYMFLRTQGVSPATHPVKAELDRIRGYFNRLKKVGKPPEQRTMKVDAAATRRFIDNALSGDRTWHNAKTTD 133
            E L+ FE ++G V   ++ +  +SR+++   + P ++AK++L  AY +TS+F+++L T GVSP  HPVK EL+RI+ Y NR+K++    +++  K+D  A  RF+ +AL   +  H AK  +
Sbjct:   16 EYLSTFENSIGAVDEMLRAMMSVSRNDLLQKLDPLEQAKVDLVSAYSLTSMFWVYLTTHGVSPKEHPVKQELERIKVYMNRVKEI--TDKKKAGKLDPGAASRFVKSALGQLKPKHAAKVAN 135          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1054.6.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNC5_ECTSI4.100e-7574.23Nuclear nucleic acid-binding protein C1D n=1 Tax=E... [more]
UPI001F04DAC02.220e-2037.04nuclear nucleic acid-binding protein C1D-like n=1 ... [more]
A0A835ZH36_9STRA3.730e-2042.73Nuclear nucleic acid-binding protein C1D (Fragment... [more]
C1D_XENLA1.770e-1943.27Nuclear nucleic acid-binding protein C1D n=2 Tax=X... [more]
A0A2D4BWA5_PYTIN2.900e-1937.88Nuclear nucleic acid-binding protein C1D n=2 Tax=P... [more]
R1DEY4_EMIHU3.740e-1942.20Nuclear nucleic acid-binding protein C1D n=1 Tax=E... [more]
A0A7S3W1R2_EMIHU4.670e-1942.20Nuclear nucleic acid-binding protein C1D (Fragment... [more]
A0A2R2MU34_LINUN5.780e-1933.15Nuclear nucleic acid-binding protein C1D n=1 Tax=L... [more]
A0A3B4A2J3_9GOBI1.230e-1836.51Nuclear nucleic acid-binding protein C1D n=2 Tax=O... [more]
G5BNU9_HETGA1.680e-1836.89Nuclear nucleic acid-binding protein C1D n=1 Tax=H... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007146Sas10/Utp3/C1DPFAMPF04000Sas10_Utp3coord: 14..92
e-value: 1.2E-11
score: 45.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..143
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 122..225
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 240..262
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 175..200
IPR011082Exosome-associated factor Rrp47/DNA strand repair C1DPANTHERPTHR15341SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSORcoord: 8..201

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1054contigA-nodosum_M_contig1054:98892..100534 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1054.6.2mRNA_A-nodosum_M_contig1054.6.2Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1054 98346..100605 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1054.6.2 ID=prot_A-nodosum_M_contig1054.6.2|Name=mRNA_A-nodosum_M_contig1054.6.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=263bp
MADESESKKGMESLNNFERALGHVRNSVQPLTQMSRDEVGACISPADRAK
LNLQVAYGVTSLFYMFLRTQGVSPATHPVKAELDRIRGYFNRLKKVGKPP
EQRTMKVDAAATRRFIDNALSGDRTWHNAKTTDSKEAQRRRAEAGIGRSL
PAGQPENCTSPAAWKPRENPPATSGKRKHQTPAVTTGASRSSSSGSNRVA
APSKGRAESWNRAKALADDAEPEGAAAVAAAAAEECARVSKRAKSCGKNG
GKKGKERYHIPK*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007146Sas10/Utp3/C1D
IPR011082Exosome-assoc_fac/DNA_repair