prot_A-nodosum_M_contig1052.24.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1052.24.1
Unique Nameprot_A-nodosum_M_contig1052.24.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length109
Homology
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BLAST of mRNA_A-nodosum_M_contig1052.24.1 vs. uniprot
Match: A0A6H5LAQ6_9PHAE (Cytochrome c oxidase assembly protein COX20, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAQ6_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 2.540e-38
Identity = 59/94 (62.77%), Postives = 76/94 (80.85%), Query Frame = 0 
Query:    9 WSDQLDSFKAGGLSILKKPCVRNSLMAGIATGTFMGIHRVRIGRTVPQACRAACFTFIVGSCIHMVACSYQLRRKYDELDRAMELQGGIRASEA 102
            W +QL+  K  G SILKKPCVRN+LMAGI TGT MGIH+ R+G+TVPQAC A  +T ++GSCIHM+AC+YQLRRKY++++R M + G I AS+A
Sbjct:    6 WPEQLEGVKRNGASILKKPCVRNALMAGIGTGTLMGIHKFRVGKTVPQACAAWGYTLVLGSCIHMMACTYQLRRKYEDVERQMAMSGAIHASKA 99
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1052.24.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LAQ6_9PHAE2.540e-3862.77Cytochrome c oxidase assembly protein COX20, mitoc... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022533Cox20PFAMPF12597DUF3767coord: 22..94
e-value: 8.0E-12
score: 44.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1052contigA-nodosum_M_contig1052:234546..240951 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1052.24.1mRNA_A-nodosum_M_contig1052.24.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1052 234371..241282 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1052.24.1 ID=prot_A-nodosum_M_contig1052.24.1|Name=mRNA_A-nodosum_M_contig1052.24.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=109bp
MAASSENQWSDQLDSFKAGGLSILKKPCVRNSLMAGIATGTFMGIHRVRI
GRTVPQACRAACFTFIVGSCIHMVACSYQLRRKYDELDRAMELQGGIRAS
EAHGARRH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022533Cox20