mRNA_A-nodosum_M_contig1052.24.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1052.24.1
Unique NamemRNA_A-nodosum_M_contig1052.24.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1052.24.1 vs. uniprot
Match: A0A6H5LAQ6_9PHAE (Cytochrome c oxidase assembly protein COX20, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAQ6_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.950e-35
Identity = 59/94 (62.77%), Postives = 76/94 (80.85%), Query Frame = 2 
Query:  356 WSDQLDSFKAGGLSILKKPCVRNSLMAGIATGTFMGIHRVRIGRTVPQACRAACFTFIVGSCIHMVACSYQLRRKYDELDRAMELQGGIRASEA 637
            W +QL+  K  G SILKKPCVRN+LMAGI TGT MGIH+ R+G+TVPQAC A  +T ++GSCIHM+AC+YQLRRKY++++R M + G I AS+A
Sbjct:    6 WPEQLEGVKRNGASILKKPCVRNALMAGIGTGTLMGIHKFRVGKTVPQACAAWGYTLVLGSCIHMMACTYQLRRKYEDVERQMAMSGAIHASKA 99
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1052.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LAQ6_9PHAE1.950e-3562.77Cytochrome c oxidase assembly protein COX20, mitoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1052contigA-nodosum_M_contig1052:234371..241282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog157072.XP_008878760.1
PFAMsDUF3767
Model size833
Max annot lvl2759|Eukaryota
KEGG koko:K18184
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.5e-06
EggNOG OGs2DZDZ@1|root,2S6YC@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_004030.1
DescriptionProtein of unknown function (DUF3767)
Cds size327
COG categoryS
BRITEko00000,ko00001,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866431.407545-UTR-A-nodosum_M_contig1052:234370..2345451680866431.407545-UTR-A-nodosum_M_contig1052:234370..234545Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1052 234371..234545 -
1680866432.4839995-UTR-A-nodosum_M_contig1052:240951..2412821680866432.4839995-UTR-A-nodosum_M_contig1052:240951..241282Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1052 240952..241282 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866431.422028-CDS-A-nodosum_M_contig1052:234545..2346541680866431.422028-CDS-A-nodosum_M_contig1052:234545..234654Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1052 234546..234654 -
1680866432.456688-CDS-A-nodosum_M_contig1052:239014..2390781680866432.456688-CDS-A-nodosum_M_contig1052:239014..239078Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1052 239015..239078 -
1680866432.4743583-CDS-A-nodosum_M_contig1052:240797..2409511680866432.4743583-CDS-A-nodosum_M_contig1052:240797..240951Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1052 240798..240951 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1052.24.1prot_A-nodosum_M_contig1052.24.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1052 234546..240951 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1052.24.1

>prot_A-nodosum_M_contig1052.24.1 ID=prot_A-nodosum_M_contig1052.24.1|Name=mRNA_A-nodosum_M_contig1052.24.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=109bp
MAASSENQWSDQLDSFKAGGLSILKKPCVRNSLMAGIATGTFMGIHRVRI
GRTVPQACRAACFTFIVGSCIHMVACSYQLRRKYDELDRAMELQGGIRAS
EAHGARRH*
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mRNA from alignment at A-nodosum_M_contig1052:234371..241282-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1052.24.1 ID=mRNA_A-nodosum_M_contig1052.24.1|Name=mRNA_A-nodosum_M_contig1052.24.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6912bp|location=Sequence derived from alignment at A-nodosum_M_contig1052:234371..241282- (Ascophyllum nodosum dioecious)
AGGGGACACAAGAGCACATCACCCGTTCAACAACGACATCCTGTAGTTTA
GTCGTGTATGGTATATAGACTTGAATTTAGAAACGTGTACATGAAAACAG
ATTTACAATACGAAACCTTCACCTGATTTGTTACATGCAGATAGTCCACG
AGTTGGTACCTATATCCCATTCTGTGAAACAGAAGTACAGAGGTGCAACC
TATTGCTGTCCGTGCTGTCCAACTTTAGTCCTTACAGGCACACCACGAGC
AGACAAACGATCCGCTGCCATCTTTCTGTGAGACCCTTGCTGCGCTACTC
GTAAGCTAATAAAGCCTATCGGAGTACCACCATGGCTGCTTCCAGTGAAA
ACCAATGGTCTGATCAACTGGACTCCTTCAAAGCCGGCGGTCTTTCAATT
CTCAAGAAGCCCTGCGTCCGCAACTCTCTCATGGCTGGGATCGCTACCGG
GACGTTTATGGGGATCCACAGGGTTCGAATAGGAAGTGAGACATAATCCT
GTGATAGAGGGCCTATTCGTTGCTTCAGGACGCAATCGACTTCATCGACT
GTTCTTGTTCCAGCTCTACATTCTGGATTTTGAGCTTTGACGACGACATC
AGTCATGCTCCGTTGGTCTTTCCAATTCTCAATTACGTCAATGCCACTCT
GGAGGGAAATTGATCATGATGTAATACAAGTAGTACGACAGAGTGTCATC
ATTTCGAGGTTATACCATCGCACCGACCCCTCTCGTATAAGATTTACGAC
CATCTCTTCACTTCAGGCAAGATGATAAACCGCGACGGGAATCGAACCCA
GACAAAGCTTTGGTAGAGTGATTCAGTACCGGCACGTCTCTATGTATGGT
ATGTATGGTCATCACATATAGCAGAGTATGGATCAACCGGGTAAGGTTGC
CAATCCTGCTCGTGGTCAGCTGAACAGGGAAAATAATATTCCCCTGTCCC
CGTGCGTGCCTGAGAATTTGGTCTCGCGAGACGGGTTCAGCCGTCCCGTC
CCGCGTCAGCCTGCTCATCTCCATACTCAGGCTGAATCTGGTGCTTACTT
ACGGGATTCCTCCCGAGTTCCGCGGCGGCGTCCATTATGAAACCGCCATA
CGCCATCGGGTCAGTCCCAAGTTTATCGGGTCATAAATAAATGGACGCCG
CCGCGGAACTCGGGAGGAATCCCGTAAGTAAGTACCAGATTCAGCCTGAG
CATGGAGACGAGCAGGCTGATGCGGGACGGGACTGTCGAAACCGTCTCGC
GAGACCAAGTTCTCAGGCGCGACCGGGTACAAGGAAATGTCAATTTTCTC
TGTTCAGCTGACCACATGCAGGATTGACAACCTTACCCGGTTGATCCATA
CTCTTGCTTTCCGCCGGTACTTTCAACATGCCCACTTCATACCAATAGTG
GGTGTGGGAAAGAGAGGCGAATATTAATTGGTCCATGGTGACCTGCCAAG
GCAGCACTCGTTCGGAACTACCTTGAGGTTTACTGACCCTGTGCCGGCGG
ACTCTCGGCAGTGAACGCCATCGGTACGCAGTTGCGTGACCCGATAAACT
CGGGACTGACCCGATGGCGTATGGCGGTTTAAATAAATAAATGGACGCCG
CCGCGGAACTCGGGAGGAATCCCGTAAGTAAGCACCAGATTCAGCCTGAG
TATGGAGATGAGCAGGCTGACGCGGGACGGGACGGCTGAACCCATTTCGC
GAGACCAAATTCTCAGGCACGCACGGGGACAGGGGAATATTAATTTTCCC
TGTTCAGCTGACCACGAGCAGGATTGGCAACCTTACCCGGTTGATCCATA
CTCTGCTATATGTGATGACCATATGTGTGATGACCGGGGGATGCTCAGAA
GGTCTAAGAGTAGGTGTGCTCTGATTTTTCTTTAAATAATACTGATTCAG
ATGACCATACATACATACCACCTGAGCTCTTACCATCCAGTCAGCGCCGA
TTGATCTAGGTAAGATGAAAGCCTTTGCAGCAATCCGTGTCGTCAGTAAC
GTCATTCCTGGGGCTCAAACGTCTTCGCGTTACTGACCAAGTTAAACAGG
GTGGGGTTTCCGTTTTAAGTTAACGCGTTTTGGAGGGCTCGTATATTTTT
CTATTTTCTACTTCAAAATCGCACTCGTATCGAGTCCCCCGAGGTATAGT
CTTTCCACAGTCAACCCTCAAGTTTTTGTTGTTGTCCTCCGATAATTGTT
ACAGGAACTGTTCCGCAGGCGTGCCGGGCCGCATGCTTCACATTCATCGT
AGGCTCCTGCATACACATGTGAGTGGGATCCCACCTGTTCCATAAAAGTG
CCGAGGCTGAAACTCAACCATAGGTTGTTAGTTTGGTAGAAATTAGCATG
TCTCTTGTCTAACTGTTCCTTTATTTGCTATCCTTTCGTGAAGAAACTCC
CCCCAAATGACCGAAAACAAGGTTGCCAATTCTGTTCTTGGTGAACTGAA
CAGGGGAAATAAAATCTTCCCTGTCTCCGTTCGCGCCTGAGAAATTGGTC
TCGCGAGACAGGGTAGACCGTCCCGTCTCGCGTCAGCTCGCCCATAGGCC
TCCGATACAATTTGTCTGTATCGCACATGTCCGCTATGCCAATAGTGGGT
GTGGGAGCAGAGAGGGGCACAAAAGTTGGTACGTGGGGAAACACGAAAGG
CAGCATCATTTACTGGAATCGCCTTGAGGACTACTACCTCTGTGTCGGCG
GACTCTCAGCTGGCAGTGAACGCCATCGGTACGCAATCGCGTGACCTGAT
AAACTCAGAACTGACCCGATGTCGGTAGGTGAAATAAATGGACGCCCTCG
CGGCAAGCAGGAAGAATCCCATTAACCAATCAGATTCAGCCTGAGTGTAG
ATAATGAGCGGGTTGACGCGGGACGGGACGGGACGGCCGAACCTATCTTG
CGAGACCAAATTCTCAGGCGCGAACGGGGATAGGGAAAAGTATATTTTCC
CTGTTCAGCCGACCACGTGCTGGATTGGCAACCATACTCGGTTGATCCAT
ACTATACTATAAGTGATGGCCATACATGCATACATACATAAGGTGAGTAG
ATAGGTCCATTACCAAGCACGTCTAGAGCGAAGGGTCGGTTTGAAGCGCA
CAGGCCAAAATTTCCCAAAAGTAGGAAACGAACGGAGGAACGTGCCGTTT
TCTTTAAAAAAAAAAAAAACGAGCTTTAAGTTTTGAGAAATAACGCCTGC
GGAGGCCTTATACGAACACCCTATTGGAGGGGGTTCTTGGCGGCCCTCTT
GGAGATATTTACGGCTGAAGTATTGGTATCGTGACGACTTCGAGCCACCC
CAGCCCGTGACCGGAAAGTCGGCGTCGGCTCTGACGGACACCTGTCATTG
CTGAAATAACCGAACTGCTCATGCCAGTGCGTGGCCCACAGAGCTTTTGT
TGATAATTTATCTGCCACGGCGATCAGATCGCCTCAACAGTCCCAGTTTG
TCGGTAGTCCCTTCCGCGCCACGAGCTACCTCCTTGTCTGAATATCTGGC
CCTTTTGTTACCATTAAGTCAGCGTCGAGTTGACCCGGGTTGGTAGCCTA
CTTTTTCTTCCTCACCATGCTGCTCTCTACCGATCTTCCCTGCTCTTTCG
AGCCATTTCGAAACTGGTCGACAGTGCTGAAACACCCGTACACCCGGACA
GGCTCGTTTGGAATGTTCGGCGAGATTTCCCTCTTGTCTCTAAACAAACA
AATTTGACGTGTGAAGGAGGGGGGGGGGGCTAATGCCCGGTCCCAAATGA
GTTAAAAAATAAGTAAATGCGGAAACCCCTGCAACGTTTGAGAAAATTGG
AAGCACGCCGTTTAAACCGAAACCCTATTGACAGCAATAGTGCCCTCCTG
TCGAAGCAAGTGAAAAACCTTCCAAACTTTGAAAAAGTTGCGATAAACAC
TTCTACGCAAACCGCAAACCCTCTGCTTTTCCCACGACTGAAAAAAGTTG
GAACAGGCCGTTCCAAACTTTTCTGTTGTTATCCATGTCGTAAAATGGAT
GCGATGCAAGTTTACAACTTTGGAAAACACGCCTCGTGGGATAATTTTTT
CGAACACCTCGTCTGATCATCTCGGACTATGTTCCACCCCCCACGAGGGC
TCAAAATCGTGCCGGCCACACCCTTCCCCGCTGCCCGAGATTTGTTGGAA
GCTTGTCTGAAGTCTTTCCGCGACGCCCGAAAGTTTGATATCAGAAGAGA
GTCCAACACCAAACGCTATCTGCAGCAGCCGTGGTTCGAGGTCAACCGAT
GCTTAGACCCTAAAGTCCCATTTTCTTGATTTTACCAACGTTGGGCGATA
CCTCGCGATGCAGCAAGCACGGACAGGGAAGGTAGCAATGCCAGTGTTGC
AGGAGATCGAGCTACGCGAGACGCATGACACGAGGCCCCCCTGGACGATG
TCCAATCGTGCGCAAGAGATGACAATGCAGGCTGTGATGAGTTGTCTGCT
TTTCAACACAAAATGCGGCAACACCAGCAGCGTAAAACAGAAGTACGAGG
CCGACTCTCTACAGGCCTTGGGAGGATGTACGCTTCCACAGCGCTGTATC
CAGAAGATTCCCTGAGCCTAGGTTGGAAGGGGGCGGCCACCGGCGGGGGG
TTCGATGCACCTCCGCTATCCGTGGCTTTTGAACACAGACTTGCGTTGTT
GCCATTTTATCCAGAGCCCTACCGGGACACAGAGATCATAAGGATTTACA
ATGCGGAAGGATTTGCGCGGTATAGTCTATGGTAGCTGGAAAACTTGGTA
GCTAGCGGTACGCGACGTGGTATATGGTAGCTGGAAATGGTATAAAGCTG
AGGAACGAACCGTACGGTAGCGAAACCACGGCTAGCGGTGGAACGATAGC
GAAACCTCGGCAACCAAGAGTACGCCGCGGCTTGTCCAACTGCAGACCGC
TGCATCGCTGTACCATTCAATTAGCCAGGATCACATGACATCTTGGCTCT
CGTCCAGCTGCGGCATGCGTGCTGCTCATGACCAGATTGGTGTGCTACCC
TCTGAGGACTGACAACGAACCCCGAATACCCCACGGCCCCAGCCAAGGGT
TTTCATACTTTTGGGGGCGTTCTAGTCTTTCGTTGCCTAAATCTTGTACA
TTAGAAAGTCTTGTGAACCAAGTTGTAACGTTGGTTTTAGTAGTAGGTTG
ATAGGCTTTCAGTCGCCAAGCCCAGGAACCACGGTTCTCGGCAGGATGTC
GAGGTAGGTTGGTGGCGCGGCATATAAAATAAATAAATAAAACGCGGTAA
CTTTGCGATAACGGTACGTACGGTACATAGATCGTCGGTAACTTAAGTGT
ACGGTACTACAGTACCGCGAAAAATTTACTACGGCGCCTCGCGCTGTTTT
TTTTTCTCTCATAAGAGCGCTGAGATGCGTCCTTAGGTTTGCCGTTTGTT
CGCCCCCCGCTTCAAAAAGCTCTCATTTGAGACAAAAAAAACAGATTTAG
AAACAGAAAAATGGACTGCGAATAAATAATAGCGAAGGCGTTAACCAGGG
AGAGATGGTTTTTGACTCCATGAAAGACCACTGATAAGCAGCGTCATTGG
AGGTTGGAGAGGTAGCCTAGCATGTTGAATATTTCCATCAGCAGAAAAGG
CATATGATGAAGAAGCAAGTACGCTCCCTATTTGAAATTGAAAGTACTAG
GAGGGACGCGTCTACTTGTAGGGGTGGACGAAGCGAAGCGTCGGGGGGGG
GGGGTATTATTTATTGTCATATTTCTGCCAGCGTGTCGTTTGTTTGTTGT
TTTTTGTTTATTTCACATTAACTGATTCGCTACGAATCCAGCCGTGGTCA
CAAGATAGACGGAACCAAACCAAATCAAACCGGGAATACGTTCGAAGATA
ATCAGGGAAACCAGACAAAGAGAATGGACAAGAGAGTAGCCAGTAAGGTA
CATCGTCGCGATAAACAAGGAACAGAAAAAACAGACAAAATCACAAATAG
AAGGAACAAACTAGGGGCAACCACATAAAACGCCCCTCAGCAGGCTACGC
AAGGGAGGCAGCCCTATAAACGGCAGAATACAACCCAGGCATGAAGACAA
AGGCAAGGACAACAGATGCGACACACAGCGAAATAAAAACACAGATGGAG
GAAAAGGAGACAACGATTAAATGAAATAAAAGAATGAGGTATACAGACAC
AAGAAGCATCGCGATGGGCTAACTGTGTTTGAGAAAAAGGGCAAGAACGT
TGGCAGCGATTTTTGTTGGTCGTTGAATCCGATTTTTGTTGGTCATTGAA
TCTTGATGAATCAACAAAAACCTATAAACTTGTCGCGTTTTTATATCTAC
GAAAAAAATACGGCCAAAAACAATGCACTACGGAACCAAGGTAACCCTTT
ATTGGGAGTTCCCGTGGACGGTGTTTCGGAAACATTTGACCCACCGAGAC
TTCTTCAGTTGATTGGGCTATTTATTCGGTACGGAACATGGTAACCAACC
ATTGGCCGCTCATGTAGCGCTTGGTAAGTAACGGCCGGCTAATATCTCAA
CAAGTGATCATTATTGCTGTAATACTTCCGAGAGGACTCGCTGTTTGAAT
AAAAACTTTTTTCACCACTTTTGCTGCCTCGGTTGCAATCACTTTTGCTG
CCTGTGTGTTGCGGTCCTGATGATGCAGGGTTGCGTGCAGCTACCAGCTT
CGACGAAAGTACGACGAGTTGGACCGCGCAATGGAACTCCAAGGTGGCAT
TCGCGCGAGCGAAGCACACGGAGCCCGGCGGCATTAACTTCAAGGGTGGT
GTCGGTGCTTCGTAAATCTAGAGTTGGTGCACGATTCGCGAAAGTTATCC
ACCTATGGAAAATCCTTGTCTAGTGATTTACGCCACAGGATCCAGGGTCG
CGATCGTGTGGTTTCAGGGTTAGGTGATAGCAATGTCGTTATTTGAAAGG
ACGATGACACTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1052:234371..241282-

>mRNA_A-nodosum_M_contig1052.24.1 ID=mRNA_A-nodosum_M_contig1052.24.1|Name=mRNA_A-nodosum_M_contig1052.24.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=327bp|location=Sequence derived from alignment at A-nodosum_M_contig1052:234371..241282- (Ascophyllum nodosum dioecious)
ATGGCTGCTTCCAGTGAAAACCAATGGTCTGATCAACTGGACTCCTTCAA
AGCCGGCGGTCTTTCAATTCTCAAGAAGCCCTGCGTCCGCAACTCTCTCA
TGGCTGGGATCGCTACCGGGACGTTTATGGGGATCCACAGGGTTCGAATA
GGAAGAACTGTTCCGCAGGCGTGCCGGGCCGCATGCTTCACATTCATCGT
AGGCTCCTGCATACACATGGTTGCGTGCAGCTACCAGCTTCGACGAAAGT
ACGACGAGTTGGACCGCGCAATGGAACTCCAAGGTGGCATTCGCGCGAGC
GAAGCACACGGAGCCCGGCGGCATTAA
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