prot_A-nodosum_M_contig105.29.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_A-nodosum_M_contig105.29.1
Unique Name	prot_A-nodosum_M_contig105.29.1
Type	polypeptide
Organism	Ascophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length	170

Homology

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BLAST of mRNA_A-nodosum_M_contig105.29.1 vs. uniprot
Match: D1J798_ECTSI (Cytochrome b6 n=62 Tax=Stramenopiles TaxID=33634 RepID=D1J798_ECTSI)

HSP 1 Score: 322 bits (826), Expect = 1.330e-110
Identity = 157/161 (97.52%), Postives = 158/161 (98.14%), Query Frame = 0

Query:    5 KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVTGYSLPWDQVGFWACKIVTGVPEAVPVIGPPIVQLLRGGVSVGQSNTLNNF 165
            KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMT+VNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVTGYSLPWDQVGFWACKIVTGVPEAVPVIGPPIVQLLRGGVSVGQS TL  F
Sbjct:   24 KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVTGYSLPWDQVGFWACKIVTGVPEAVPVIGPPIVQLLRGGVSVGQS-TLTRF 183

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BLAST of mRNA_A-nodosum_M_contig105.29.1 vs. uniprot
Match: CYB6_THAPS (Cytochrome b6 n=103 Tax=cellular organisms TaxID=131567 RepID=CYB6_THAPS)

HSP 1 Score: 301 bits (771), Expect = 3.170e-102
Identity = 142/161 (88.20%), Postives = 151/161 (93.79%), Query Frame = 0

Query:    5 KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVTGYSLPWDQVGFWACKIVTGVPEAVPVIGPPIVQLLRGGVSVGQSNTLNNF 165
            KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPS+ +AF+SVEYIMT VNFGWLIRSIHRWSASMMV+ML+LHVFRVYLTGGFKKPRELTWVTGV LAV TVSFGVTGYSLPWDQVGFWACKIVTGVP AVP++GPP+V +LRGG SVGQS TL  F
Sbjct:   24 KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSVVDAFASVEYIMTSVNFGWLIRSIHRWSASMMVMMLVLHVFRVYLTGGFKKPRELTWVTGVILAVVTVSFGVTGYSLPWDQVGFWACKIVTGVPAAVPIVGPPLVLVLRGGESVGQS-TLTRF 183

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BLAST of mRNA_A-nodosum_M_contig105.29.1 vs. uniprot
Match: J9QUX6_9STRA (Cytochrome b6 n=2 Tax=Pelagomonadales TaxID=54409 RepID=J9QUX6_9STRA)

HSP 1 Score: 298 bits (763), Expect = 5.250e-101
Identity = 140/161 (86.96%), Postives = 151/161 (93.79%), Query Frame = 0

Query:    5 KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVTGYSLPWDQVGFWACKIVTGVPEAVPVIGPPIVQLLRGGVSVGQSNTLNNF 165
            KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRP++S+AF+SVEYIMT+VNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGV L   T SFGVTGYSLPWDQVGFWACKIVTGVP+++PV+GP +V +LRGGVSVGQS TL  F
Sbjct:   24 KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPTVSDAFASVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVLLGAVTASFGVTGYSLPWDQVGFWACKIVTGVPDSIPVVGPLLVGVLRGGVSVGQS-TLTRF 183

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BLAST of mRNA_A-nodosum_M_contig105.29.1 vs. uniprot
Match: A0A0D3M5L9_9STRA (Cytochrome b6 n=19 Tax=Ochrophyta TaxID=2696291 RepID=A0A0D3M5L9_9STRA)

HSP 1 Score: 295 bits (756), Expect = 6.110e-100
Identity = 136/161 (84.47%), Postives = 152/161 (94.41%), Query Frame = 0

Query:    5 KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVTGYSLPWDQVGFWACKIVTGVPEAVPVIGPPIVQLLRGGVSVGQSNTLNNF 165
            KYVPPHVNIFYCFGGI  TCFL+QVATGFAMTFYYRP++++AF+SVEY+MT+ NFGWLIRSIHRWSASMMVLM+ILHVFRVYLTGGFK+PRELTWVTGV L+V TVSFGVTGYSLPWDQVG+WACKIVTGVPEA+PVIG P+V+LLRGGVSVGQ+ TL  F
Sbjct:   24 KYVPPHVNIFYCFGGITLTCFLIQVATGFAMTFYYRPTVTDAFASVEYLMTEANFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKRPRELTWVTGVLLSVITVSFGVTGYSLPWDQVGYWACKIVTGVPEAIPVIGSPLVELLRGGVSVGQA-TLTRF 183

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BLAST of mRNA_A-nodosum_M_contig105.29.1 vs. uniprot
Match: CYB6_GRATL (Cytochrome b6 n=171 Tax=Eukaryota TaxID=2759 RepID=CYB6_GRATL)

HSP 1 Score: 293 bits (751), Expect = 3.530e-99
Identity = 140/161 (86.96%), Postives = 151/161 (93.79%), Query Frame = 0

Query:    5 KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVTGYSLPWDQVGFWACKIVTGVPEAVPVIGPPIVQLLRGGVSVGQSNTLNNF 165
            KYVPPHVNIFYC GGIVFT FL+QVA+GFAMTFYYRP+++EAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILH+FRVYLTGGFKKPRELTWVTGV LAV TVSFGVTGYSLPWDQ+G+WA KIVTGVPEA+PV+G  IV+LLRGGVSVGQS TL  F
Sbjct:   24 KYVPPHVNIFYCIGGIVFTSFLIQVASGFAMTFYYRPTVAEAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILHMFRVYLTGGFKKPRELTWVTGVILAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVVGGSIVELLRGGVSVGQS-TLTRF 183

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BLAST of mRNA_A-nodosum_M_contig105.29.1 vs. uniprot
Match: W0RYI6_PORPP (Cytochrome b6 n=17 Tax=Eukaryota TaxID=2759 RepID=W0RYI6_PORPP)

HSP 1 Score: 293 bits (750), Expect = 5.010e-99
Identity = 139/161 (86.34%), Postives = 150/161 (93.17%), Query Frame = 0

Query:    5 KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVTGYSLPWDQVGFWACKIVTGVPEAVPVIGPPIVQLLRGGVSVGQSNTLNNF 165
            KYVPPHVNIFYCFGGIV TCF++QVA+GFAMTFYYRPS++EAFSSV YIMTDVNFGWLIRSIHRWSASMMVLM+ILH FRVYLTGGFK PRELTWVTGVTLAV TVSFGVTGYSLPWDQVGFWA KIVTGVPEA+PV+G  +V+LLRGGVSVGQ+ TL  F
Sbjct:   24 KYVPPHVNIFYCFGGIVLTCFIMQVASGFAMTFYYRPSVAEAFSSVSYIMTDVNFGWLIRSIHRWSASMMVLMMILHSFRVYLTGGFKTPRELTWVTGVTLAVLTVSFGVTGYSLPWDQVGFWAVKIVTGVPEAIPVVGSSLVELLRGGVSVGQT-TLTRF 183

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BLAST of mRNA_A-nodosum_M_contig105.29.1 vs. uniprot
Match: A0A516ZA38_9STRA (Cytochrome b6 n=4 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZA38_9STRA)

HSP 1 Score: 293 bits (751), Expect = 5.140e-99
Identity = 138/161 (85.71%), Postives = 149/161 (92.55%), Query Frame = 0

Query:    5 KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVTGYSLPWDQVGFWACKIVTGVPEAVPVIGPPIVQLLRGGVSVGQSNTLNNF 165
            KYVPPHVNIFYCFGGIV TCFLVQVATGFAMT YYRP++ EAF+SVEYIMT VNFGWLIRSIHRWSASMMV+M++LHVFRVYLTGGFKKPRELTW+TGV LAV TVSFGVTGYSLPWDQVG+WACKIVTGVPEAVPV+G  ++ LLRGGVSVGQS TL  F
Sbjct:   35 KYVPPHVNIFYCFGGIVLTCFLVQVATGFAMTVYYRPTVVEAFASVEYIMTQVNFGWLIRSIHRWSASMMVMMMVLHVFRVYLTGGFKKPRELTWITGVILAVVTVSFGVTGYSLPWDQVGYWACKIVTGVPEAVPVVGTTVLYLLRGGVSVGQS-TLTRF 194

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BLAST of mRNA_A-nodosum_M_contig105.29.1 vs. uniprot
Match: CYB6_GUITH (Cytochrome b6 n=13 Tax=Eukaryota TaxID=2759 RepID=CYB6_GUITH)

HSP 1 Score: 293 bits (749), Expect = 7.120e-99
Identity = 135/161 (83.85%), Postives = 151/161 (93.79%), Query Frame = 0

Query:    5 KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVTGYSLPWDQVGFWACKIVTGVPEAVPVIGPPIVQLLRGGVSVGQSNTLNNF 165
            KYVPPHVNIFYC GGI FTCF++QVATGFAMTFYYRP+++EAF+SVEYIMT+VN+GWL RS+HRWSASMMVLM+ILHVFRVYLTGGFKKPRELTWVTGVTLAV TVSFGVTGYSLPWDQVG+WACKIVTGVPEA+PV+G  +V+LLRG VSVGQ+ TL  F
Sbjct:   24 KYVPPHVNIFYCIGGITFTCFIIQVATGFAMTFYYRPTVAEAFASVEYIMTEVNYGWLFRSMHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVTLAVVTVSFGVTGYSLPWDQVGYWACKIVTGVPEAIPVVGSLLVELLRGSVSVGQA-TLTRF 183

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BLAST of mRNA_A-nodosum_M_contig105.29.1 vs. uniprot
Match: M5DCT3_CHOCR (Cytochrome b6 n=28 Tax=Eukaryota TaxID=2759 RepID=M5DCT3_CHOCR)

HSP 1 Score: 291 bits (745), Expect = 2.890e-98
Identity = 139/161 (86.34%), Postives = 150/161 (93.17%), Query Frame = 0

Query:    5 KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVTGYSLPWDQVGFWACKIVTGVPEAVPVIGPPIVQLLRGGVSVGQSNTLNNF 165
            KYVPPHVNIFYC GGIVFT FL+QVA+GFAMTFYYRP+++EAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILH+FRVYLTGGFKKPRELTWVTGV LAV TVSFGVTGYSLPWDQ+G+WA KIVTGVPEA+PV+G  IV+LLRG VSVGQS TL  F
Sbjct:   24 KYVPPHVNIFYCLGGIVFTSFLIQVASGFAMTFYYRPTVTEAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILHMFRVYLTGGFKKPRELTWVTGVILAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVVGGSIVELLRGSVSVGQS-TLTRF 183

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BLAST of mRNA_A-nodosum_M_contig105.29.1 vs. uniprot
Match: A0A170TME3_9CHLO (Cytochrome b6 n=2 Tax=Palmophyllaceae TaxID=2201466 RepID=A0A170TME3_9CHLO)

HSP 1 Score: 291 bits (745), Expect = 2.890e-98
Identity = 137/161 (85.09%), Postives = 148/161 (91.93%), Query Frame = 0

Query:    5 KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVTGYSLPWDQVGFWACKIVTGVPEAVPVIGPPIVQLLRGGVSVGQSNTLNNF 165
            KYVPPHVNIFYCFGGIV TCFLVQVATGFAMTFYYRP++++AF SV Y+MT VNFGWLIRSIHRWSASMMVL +ILH+FRVYLTGGFKKPRELTWVTGV LAV TVSFGVTGYSLPWDQVG+WACKIVTGVPEAVP IGP +V+LLRG VSVGQ+ TL  F
Sbjct:   24 KYVPPHVNIFYCFGGIVLTCFLVQVATGFAMTFYYRPTVTDAFESVSYLMTSVNFGWLIRSIHRWSASMMVLTMILHIFRVYLTGGFKKPRELTWVTGVILAVCTVSFGVTGYSLPWDQVGYWACKIVTGVPEAVPFIGPIVVELLRGSVSVGQA-TLTRF 183

The following BLAST results are available for this feature:

BLAST of mRNA_A-nodosum_M_contig105.29.1 vs. uniprot

BLAST of mRNA_A-nodosum_M_contig105.29.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D1J798_ECTSI	1.330e-110	97.52	Cytochrome b6 n=62 Tax=Stramenopiles TaxID=33634 R...	[more]
CYB6_THAPS	3.170e-102	88.20	Cytochrome b6 n=103 Tax=cellular organisms TaxID=1...	[more]
J9QUX6_9STRA	5.250e-101	86.96	Cytochrome b6 n=2 Tax=Pelagomonadales TaxID=54409 ...	[more]
A0A0D3M5L9_9STRA	6.110e-100	84.47	Cytochrome b6 n=19 Tax=Ochrophyta TaxID=2696291 Re...	[more]
CYB6_GRATL	3.530e-99	86.96	Cytochrome b6 n=171 Tax=Eukaryota TaxID=2759 RepID...	[more]
W0RYI6_PORPP	5.010e-99	86.34	Cytochrome b6 n=17 Tax=Eukaryota TaxID=2759 RepID=...	[more]
A0A516ZA38_9STRA	5.140e-99	85.71	Cytochrome b6 n=4 Tax=Dictyochophyceae TaxID=39119...	[more]
CYB6_GUITH	7.120e-99	83.85	Cytochrome b6 n=13 Tax=Eukaryota TaxID=2759 RepID=...	[more]
M5DCT3_CHOCR	2.890e-98	86.34	Cytochrome b6 n=28 Tax=Eukaryota TaxID=2759 RepID=...	[more]
A0A170TME3_9CHLO	2.890e-98	85.09	Cytochrome b6 n=2 Tax=Palmophyllaceae TaxID=220146...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027387	Cytochrome b/b6-like domain superfamily	GENE3D	1.20.810.10	Cytochrome Bc1 Complex; Chain C	coord: 1..166 e-value: 5.1E-72 score: 244.5
IPR005797	Cytochrome b/b6, N-terminal	PFAM	PF00033	Cytochrome_B	coord: 4..165 e-value: 5.0E-71 score: 238.4
IPR005797	Cytochrome b/b6, N-terminal	PROSITE	PS51002	CYTB_NTER	coord: 1..169 score: 29.305571
IPR005797	Cytochrome b/b6, N-terminal	CDD	cd00284	Cytochrome_b_N	coord: 5..165 e-value: 1.05028E-73 score: 218.006
None	No IPR available	PIRSF	PIRSF000032	Cytochrome_b6	coord: 2..167 e-value: 2.2E-87 score: 290.2
None	No IPR available	PIRSR	PIRSR038885-2	PIRSR038885-2	coord: 6..165 e-value: 2.4E-43 score: 146.4
None	No IPR available	PANTHER	PTHR19271	CYTOCHROME B	coord: 4..164
IPR023530	Cytochrome b6, PetB	PANTHER	PTHR19271:SF20	SUBFAMILY NOT NAMED	coord: 4..164
IPR016174	Di-haem cytochrome, transmembrane	SUPERFAMILY	81342	Transmembrane di-heme cytochromes	coord: 3..163

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A-nodosum_M_contig105	contig	A-nodosum_M_contig105:413610..414119 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ascophyllum nodosum dioecious OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_A-nodosum_M_contig105.29.1	mRNA_A-nodosum_M_contig105.29.1	Ascophyllum nodosum dioecious	mRNA	A-nodosum_M_contig105 413610..414119 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_A-nodosum_M_contig105.29.1 ID=prot_A-nodosum_M_contig105.29.1|Name=mRNA_A-nodosum_M_contig105.29.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=170bp
MQVRKYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSV
EYIMTDVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWV
TGVTLAVTTVSFGVTGYSLPWDQVGFWACKIVTGVPEAVPVIGPPIVQLL
RGGVSVGQSNTLNNFSPND*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR027387	Cytb/b6-like_sf
IPR005797	Cyt_b/b6_N
IPR023530	Cyt_B6_PetB
IPR016174	Di-haem_cyt_TM