mRNA_A-nodosum_M_contig105.29.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig105.29.1
Unique NamemRNA_A-nodosum_M_contig105.29.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig105.29.1 vs. uniprot
Match: D1J798_ECTSI (Cytochrome b6 n=62 Tax=Stramenopiles TaxID=33634 RepID=D1J798_ECTSI)

HSP 1 Score: 322 bits (826), Expect = 1.330e-110
Identity = 157/161 (97.52%), Postives = 158/161 (98.14%), Query Frame = 1 
Query:   13 KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVTGYSLPWDQVGFWACKIVTGVPEAVPVIGPPIVQLLRGGVSVGQSNTLNNF 495
            KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMT+VNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVTGYSLPWDQVGFWACKIVTGVPEAVPVIGPPIVQLLRGGVSVGQS TL  F
Sbjct:   24 KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVTGYSLPWDQVGFWACKIVTGVPEAVPVIGPPIVQLLRGGVSVGQS-TLTRF 183
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BLAST of mRNA_A-nodosum_M_contig105.29.1 vs. uniprot
Match: CYB6_THAPS (Cytochrome b6 n=103 Tax=cellular organisms TaxID=131567 RepID=CYB6_THAPS)

HSP 1 Score: 301 bits (771), Expect = 3.170e-102
Identity = 142/161 (88.20%), Postives = 151/161 (93.79%), Query Frame = 1 
Query:   13 KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVTGYSLPWDQVGFWACKIVTGVPEAVPVIGPPIVQLLRGGVSVGQSNTLNNF 495
            KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPS+ +AF+SVEYIMT VNFGWLIRSIHRWSASMMV+ML+LHVFRVYLTGGFKKPRELTWVTGV LAV TVSFGVTGYSLPWDQVGFWACKIVTGVP AVP++GPP+V +LRGG SVGQS TL  F
Sbjct:   24 KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSVVDAFASVEYIMTSVNFGWLIRSIHRWSASMMVMMLVLHVFRVYLTGGFKKPRELTWVTGVILAVVTVSFGVTGYSLPWDQVGFWACKIVTGVPAAVPIVGPPLVLVLRGGESVGQS-TLTRF 183
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BLAST of mRNA_A-nodosum_M_contig105.29.1 vs. uniprot
Match: J9QUX6_9STRA (Cytochrome b6 n=2 Tax=Pelagomonadales TaxID=54409 RepID=J9QUX6_9STRA)

HSP 1 Score: 298 bits (763), Expect = 5.250e-101
Identity = 140/161 (86.96%), Postives = 151/161 (93.79%), Query Frame = 1 
Query:   13 KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVTGYSLPWDQVGFWACKIVTGVPEAVPVIGPPIVQLLRGGVSVGQSNTLNNF 495
            KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRP++S+AF+SVEYIMT+VNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGV L   T SFGVTGYSLPWDQVGFWACKIVTGVP+++PV+GP +V +LRGGVSVGQS TL  F
Sbjct:   24 KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPTVSDAFASVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVLLGAVTASFGVTGYSLPWDQVGFWACKIVTGVPDSIPVVGPLLVGVLRGGVSVGQS-TLTRF 183
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BLAST of mRNA_A-nodosum_M_contig105.29.1 vs. uniprot
Match: A0A0D3M5L9_9STRA (Cytochrome b6 n=19 Tax=Ochrophyta TaxID=2696291 RepID=A0A0D3M5L9_9STRA)

HSP 1 Score: 295 bits (756), Expect = 6.110e-100
Identity = 136/161 (84.47%), Postives = 152/161 (94.41%), Query Frame = 1 
Query:   13 KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVTGYSLPWDQVGFWACKIVTGVPEAVPVIGPPIVQLLRGGVSVGQSNTLNNF 495
            KYVPPHVNIFYCFGGI  TCFL+QVATGFAMTFYYRP++++AF+SVEY+MT+ NFGWLIRSIHRWSASMMVLM+ILHVFRVYLTGGFK+PRELTWVTGV L+V TVSFGVTGYSLPWDQVG+WACKIVTGVPEA+PVIG P+V+LLRGGVSVGQ+ TL  F
Sbjct:   24 KYVPPHVNIFYCFGGITLTCFLIQVATGFAMTFYYRPTVTDAFASVEYLMTEANFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKRPRELTWVTGVLLSVITVSFGVTGYSLPWDQVGYWACKIVTGVPEAIPVIGSPLVELLRGGVSVGQA-TLTRF 183
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BLAST of mRNA_A-nodosum_M_contig105.29.1 vs. uniprot
Match: CYB6_GRATL (Cytochrome b6 n=171 Tax=Eukaryota TaxID=2759 RepID=CYB6_GRATL)

HSP 1 Score: 293 bits (751), Expect = 3.530e-99
Identity = 140/161 (86.96%), Postives = 151/161 (93.79%), Query Frame = 1 
Query:   13 KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVTGYSLPWDQVGFWACKIVTGVPEAVPVIGPPIVQLLRGGVSVGQSNTLNNF 495
            KYVPPHVNIFYC GGIVFT FL+QVA+GFAMTFYYRP+++EAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILH+FRVYLTGGFKKPRELTWVTGV LAV TVSFGVTGYSLPWDQ+G+WA KIVTGVPEA+PV+G  IV+LLRGGVSVGQS TL  F
Sbjct:   24 KYVPPHVNIFYCIGGIVFTSFLIQVASGFAMTFYYRPTVAEAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILHMFRVYLTGGFKKPRELTWVTGVILAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVVGGSIVELLRGGVSVGQS-TLTRF 183
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BLAST of mRNA_A-nodosum_M_contig105.29.1 vs. uniprot
Match: W0RYI6_PORPP (Cytochrome b6 n=17 Tax=Eukaryota TaxID=2759 RepID=W0RYI6_PORPP)

HSP 1 Score: 293 bits (750), Expect = 5.010e-99
Identity = 139/161 (86.34%), Postives = 150/161 (93.17%), Query Frame = 1 
Query:   13 KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVTGYSLPWDQVGFWACKIVTGVPEAVPVIGPPIVQLLRGGVSVGQSNTLNNF 495
            KYVPPHVNIFYCFGGIV TCF++QVA+GFAMTFYYRPS++EAFSSV YIMTDVNFGWLIRSIHRWSASMMVLM+ILH FRVYLTGGFK PRELTWVTGVTLAV TVSFGVTGYSLPWDQVGFWA KIVTGVPEA+PV+G  +V+LLRGGVSVGQ+ TL  F
Sbjct:   24 KYVPPHVNIFYCFGGIVLTCFIMQVASGFAMTFYYRPSVAEAFSSVSYIMTDVNFGWLIRSIHRWSASMMVLMMILHSFRVYLTGGFKTPRELTWVTGVTLAVLTVSFGVTGYSLPWDQVGFWAVKIVTGVPEAIPVVGSSLVELLRGGVSVGQT-TLTRF 183
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BLAST of mRNA_A-nodosum_M_contig105.29.1 vs. uniprot
Match: A0A516ZA38_9STRA (Cytochrome b6 n=4 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZA38_9STRA)

HSP 1 Score: 293 bits (751), Expect = 5.140e-99
Identity = 138/161 (85.71%), Postives = 149/161 (92.55%), Query Frame = 1 
Query:   13 KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVTGYSLPWDQVGFWACKIVTGVPEAVPVIGPPIVQLLRGGVSVGQSNTLNNF 495
            KYVPPHVNIFYCFGGIV TCFLVQVATGFAMT YYRP++ EAF+SVEYIMT VNFGWLIRSIHRWSASMMV+M++LHVFRVYLTGGFKKPRELTW+TGV LAV TVSFGVTGYSLPWDQVG+WACKIVTGVPEAVPV+G  ++ LLRGGVSVGQS TL  F
Sbjct:   35 KYVPPHVNIFYCFGGIVLTCFLVQVATGFAMTVYYRPTVVEAFASVEYIMTQVNFGWLIRSIHRWSASMMVMMMVLHVFRVYLTGGFKKPRELTWITGVILAVVTVSFGVTGYSLPWDQVGYWACKIVTGVPEAVPVVGTTVLYLLRGGVSVGQS-TLTRF 194
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BLAST of mRNA_A-nodosum_M_contig105.29.1 vs. uniprot
Match: CYB6_GUITH (Cytochrome b6 n=13 Tax=Eukaryota TaxID=2759 RepID=CYB6_GUITH)

HSP 1 Score: 293 bits (749), Expect = 7.120e-99
Identity = 135/161 (83.85%), Postives = 151/161 (93.79%), Query Frame = 1 
Query:   13 KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVTGYSLPWDQVGFWACKIVTGVPEAVPVIGPPIVQLLRGGVSVGQSNTLNNF 495
            KYVPPHVNIFYC GGI FTCF++QVATGFAMTFYYRP+++EAF+SVEYIMT+VN+GWL RS+HRWSASMMVLM+ILHVFRVYLTGGFKKPRELTWVTGVTLAV TVSFGVTGYSLPWDQVG+WACKIVTGVPEA+PV+G  +V+LLRG VSVGQ+ TL  F
Sbjct:   24 KYVPPHVNIFYCIGGITFTCFIIQVATGFAMTFYYRPTVAEAFASVEYIMTEVNYGWLFRSMHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVTLAVVTVSFGVTGYSLPWDQVGYWACKIVTGVPEAIPVVGSLLVELLRGSVSVGQA-TLTRF 183
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BLAST of mRNA_A-nodosum_M_contig105.29.1 vs. uniprot
Match: M5DCT3_CHOCR (Cytochrome b6 n=28 Tax=Eukaryota TaxID=2759 RepID=M5DCT3_CHOCR)

HSP 1 Score: 291 bits (745), Expect = 2.890e-98
Identity = 139/161 (86.34%), Postives = 150/161 (93.17%), Query Frame = 1 
Query:   13 KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVTGYSLPWDQVGFWACKIVTGVPEAVPVIGPPIVQLLRGGVSVGQSNTLNNF 495
            KYVPPHVNIFYC GGIVFT FL+QVA+GFAMTFYYRP+++EAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILH+FRVYLTGGFKKPRELTWVTGV LAV TVSFGVTGYSLPWDQ+G+WA KIVTGVPEA+PV+G  IV+LLRG VSVGQS TL  F
Sbjct:   24 KYVPPHVNIFYCLGGIVFTSFLIQVASGFAMTFYYRPTVTEAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILHMFRVYLTGGFKKPRELTWVTGVILAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVVGGSIVELLRGSVSVGQS-TLTRF 183
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BLAST of mRNA_A-nodosum_M_contig105.29.1 vs. uniprot
Match: A0A170TME3_9CHLO (Cytochrome b6 n=2 Tax=Palmophyllaceae TaxID=2201466 RepID=A0A170TME3_9CHLO)

HSP 1 Score: 291 bits (745), Expect = 2.890e-98
Identity = 137/161 (85.09%), Postives = 148/161 (91.93%), Query Frame = 1 
Query:   13 KYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSVEYIMTDVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGVTGYSLPWDQVGFWACKIVTGVPEAVPVIGPPIVQLLRGGVSVGQSNTLNNF 495
            KYVPPHVNIFYCFGGIV TCFLVQVATGFAMTFYYRP++++AF SV Y+MT VNFGWLIRSIHRWSASMMVL +ILH+FRVYLTGGFKKPRELTWVTGV LAV TVSFGVTGYSLPWDQVG+WACKIVTGVPEAVP IGP +V+LLRG VSVGQ+ TL  F
Sbjct:   24 KYVPPHVNIFYCFGGIVLTCFLVQVATGFAMTFYYRPTVTDAFESVSYLMTSVNFGWLIRSIHRWSASMMVLTMILHIFRVYLTGGFKKPRELTWVTGVILAVCTVSFGVTGYSLPWDQVGYWACKIVTGVPEAVPFIGPIVVELLRGSVSVGQA-TLTRF 183
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig105.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J798_ECTSI1.330e-11097.52Cytochrome b6 n=62 Tax=Stramenopiles TaxID=33634 R... [more]
CYB6_THAPS3.170e-10288.20Cytochrome b6 n=103 Tax=cellular organisms TaxID=1... [more]
J9QUX6_9STRA5.250e-10186.96Cytochrome b6 n=2 Tax=Pelagomonadales TaxID=54409 ... [more]
A0A0D3M5L9_9STRA6.110e-10084.47Cytochrome b6 n=19 Tax=Ochrophyta TaxID=2696291 Re... [more]
CYB6_GRATL3.530e-9986.96Cytochrome b6 n=171 Tax=Eukaryota TaxID=2759 RepID... [more]
W0RYI6_PORPP5.010e-9986.34Cytochrome b6 n=17 Tax=Eukaryota TaxID=2759 RepID=... [more]
A0A516ZA38_9STRA5.140e-9985.71Cytochrome b6 n=4 Tax=Dictyochophyceae TaxID=39119... [more]
CYB6_GUITH7.120e-9983.85Cytochrome b6 n=13 Tax=Eukaryota TaxID=2759 RepID=... [more]
M5DCT3_CHOCR2.890e-9886.34Cytochrome b6 n=28 Tax=Eukaryota TaxID=2759 RepID=... [more]
A0A170TME3_9CHLO2.890e-9885.09Cytochrome b6 n=2 Tax=Palmophyllaceae TaxID=220146... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig105contigA-nodosum_M_contig105:413610..414119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D1J798
Preferred namepetB
PFAMsCytochrom_B_C,Cytochrome_B
Model size510
Max annot lvl2759|Eukaryota
KEGG koko:K00412,ko:K02635,ko:K02705
KEGG Pathwayko00190,ko00195,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map00195,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00151,M00152,M00161,M00162
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
Exons1
Evalue2.17e-111
EggNOG OGsCOG1290@1|root,KOG4663@2759|Eukaryota
Descriptionelectron transfer activity
Cds size510
COG categoryC
BRITEko00000,ko00001,ko00002,ko00194,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866426.8343189-CDS-A-nodosum_M_contig105:413609..4141191680866426.8343189-CDS-A-nodosum_M_contig105:413609..414119Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig105 413610..414119 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig105.29.1prot_A-nodosum_M_contig105.29.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig105 413610..414119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig105.29.1

>prot_A-nodosum_M_contig105.29.1 ID=prot_A-nodosum_M_contig105.29.1|Name=mRNA_A-nodosum_M_contig105.29.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=170bp
MQVRKYVPPHVNIFYCFGGIVFTCFLVQVATGFAMTFYYRPSISEAFSSV
EYIMTDVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWV
TGVTLAVTTVSFGVTGYSLPWDQVGFWACKIVTGVPEAVPVIGPPIVQLL
RGGVSVGQSNTLNNFSPND*
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mRNA from alignment at A-nodosum_M_contig105:413610..414119-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig105.29.1 ID=mRNA_A-nodosum_M_contig105.29.1|Name=mRNA_A-nodosum_M_contig105.29.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=510bp|location=Sequence derived from alignment at A-nodosum_M_contig105:413610..414119- (Ascophyllum nodosum dioecious)
ATGCAAGTTCGTAAATATGTTCCACCACATGTTAATATTTTTTATTGTTT
TGGTGGTATTGTTTTTACATGTTTTTTAGTTCAAGTAGCAACTGGGTTTG
CAATGACATTTTATTATAGACCTAGTATTAGTGAAGCTTTTTCGTCTGTT
GAATATATTATGACTGACGTTAACTTTGGGTGGCTAATCCGTTCTATTCA
CCGCTGGTCTGCAAGTATGATGGTTCTTATGTTAATTTTACATGTTTTTC
GTGTATATTTAACAGGAGGGTTTAAGAAACCTCGTGAATTAACTTGGGTT
ACTGGCGTAACTTTAGCAGTAACTACAGTTTCTTTTGGTGTAACAGGTTA
TTCATTACCTTGGGATCAAGTAGGATTTTGGGCGTGTAAAATTGTAACTG
GAGTCCCTGAAGCGGTTCCTGTCATTGGCCCACCAATAGTTCAATTACTA
CGAGGAGGAGTAAGCGTAGGGCAAAGTAACACTCTTAACAACTTTTCACC
CAATGATTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig105:413610..414119-

>mRNA_A-nodosum_M_contig105.29.1 ID=mRNA_A-nodosum_M_contig105.29.1|Name=mRNA_A-nodosum_M_contig105.29.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at A-nodosum_M_contig105:413610..414119- (Ascophyllum nodosum dioecious)
ATGCAAGTTCGTAAATATGTTCCACCACATGTTAATATTTTTTATTGTTT
TGGTGGTATTGTTTTTACATGTTTTTTAGTTCAAGTAGCAACTGGGTTTG
CAATGACATTTTATTATAGACCTAGTATTAGTGAAGCTTTTTCGTCTGTT
GAATATATTATGACTGACGTTAACTTTGGGTGGCTAATCCGTTCTATTCA
CCGCTGGTCTGCAAGTATGATGGTTCTTATGTTAATTTTACATGTTTTTC
GTGTATATTTAACAGGAGGGTTTAAGAAACCTCGTGAATTAACTTGGGTT
ACTGGCGTAACTTTAGCAGTAACTACAGTTTCTTTTGGTGTAACAGGTTA
TTCATTACCTTGGGATCAAGTAGGATTTTGGGCGTGTAAAATTGTAACTG
GAGTCCCTGAAGCGGTTCCTGTCATTGGCCCACCAATAGTTCAATTACTA
CGAGGAGGAGTAAGCGTAGGGCAAAGTAACACTCTTAACAACTTTTCACC
CAATGATTGA
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