prot_A-nodosum_M_contig1033.13.4 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_A-nodosum_M_contig1033.13.4
Unique Name	prot_A-nodosum_M_contig1033.13.4
Type	polypeptide
Organism	Ascophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length	765

Homology

[Close]

BLAST of mRNA_A-nodosum_M_contig1033.13.4 vs. uniprot
Match: A0A6H5L0R8_9PHAE (ARID domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0R8_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 5.160e-36
Identity = 91/175 (52.00%), Postives = 111/175 (63.43%), Query Frame = 0

Query:    5 MEENAVVALEGLYSGPMKVRELAQAREIFAFLRANGQGKVLEKVPSVDGGASVLDIVALFGVITSRGGVRRVQEQSLWKEVMTGLGYPFDRQTLFAVSMQYKNFLYGYEQATLGARADVGGQQKSLPPQVQXXXXXXXXXXXXXAR-VGQVGGMAQPFDQ---YQRHLRQREFEQ 175
            M+E AV ALE LYSGP+K REL +AREIFAFLR+NGQG VL  VP V+G   +LD+VAL   IT RGGVRRVQ++ LW EV + LG    +QTLF +S+ YKNFLYG+EQ    +R+  G  Q        XXXXXX        +  G  G   Q ++Q   YQ  +RQRE EQ
Sbjct:    1 MDERAVAALESLYSGPIKARELVRAREIFAFLRSNGQGTVLRDVPMVNG--KLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQVHFPSRSSAGQHQXXXXXXXXXXXXXXVVPPMGRDQHAGMSGVGTQRYEQHGHYQGQMRQRELEQ 173

[Close]

BLAST of mRNA_A-nodosum_M_contig1033.13.4 vs. uniprot
Match: D8LEX2_ECTSI (ARID/BRIGHT DNA binding domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX2_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 2.880e-33
Identity = 86/171 (50.29%), Postives = 100/171 (58.48%), Query Frame = 0

Query:    5 MEENAVVALEGLYSGPMKVRELAQAREIFAFLRANGQGKVLEKVPSVDGGASVLDIVALFGVITSRGGVRRVQEQSLWKEVMTGLGYPFDRQTLFAVSMQYKNFLYGYEQATLGARADVGGQQKSLPPQVQXXXXXXXXXXXXXARVGQVGGMAQPFDQYQRHLRQREFEQ 175
            M+E AV ALE LYSGP+K  EL +AREIFAFLR NGQG VL  VP V+G   +LD+VAL   IT RGGVRRVQ++ LW EV + LG    +QTLF +S+ YKNFLYG+EQA     A VG Q                       R  Q G        YQR +RQRE EQ
Sbjct:    1 MDERAVAALESLYSGPIKAGELVRAREIFAFLRGNGQGAVLRDVPMVNG--KLLDLVALLETITKRGGVRRVQDKGLWDEVTSELGLDSGQQTLFTISVHYKNFLYGFEQAR---HAGVGTQ-----------------------RYEQHG-------HYQRQMRQRELEQ 136

The following BLAST results are available for this feature:

BLAST of mRNA_A-nodosum_M_contig1033.13.4 vs. uniprot

BLAST of mRNA_A-nodosum_M_contig1033.13.4 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5L0R8_9PHAE	5.160e-36	52.00	ARID domain-containing protein n=1 Tax=Ectocarpus ...	[more]
D8LEX2_ECTSI	2.880e-33	50.29	ARID/BRIGHT DNA binding domain containing protein ...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 164..194
None	No IPR available	COILS	Coil	Coil	coord: 196..278
None	No IPR available	SMART	SM01014	ARID_2	coord: 24..113 e-value: 0.0031 score: 26.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 254..289
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 205..225
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 254..317
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..225
None	No IPR available	CDD	cd16100	ARID	coord: 30..113 e-value: 3.25024E-10 score: 55.4416
IPR001606	ARID DNA-binding domain	SMART	SM00501	bright_3	coord: 22..118 e-value: 6.7E-4 score: 21.1
IPR001606	ARID DNA-binding domain	PFAM	PF01388	ARID	coord: 32..113 e-value: 7.0E-7 score: 29.9
IPR001606	ARID DNA-binding domain	PROSITE	PS51011	ARID	coord: 22..117 score: 15.12072
IPR036431	ARID DNA-binding domain superfamily	GENE3D	1.10.150.60		coord: 12..127 e-value: 3.5E-12 score: 47.9
IPR036431	ARID DNA-binding domain superfamily	SUPERFAMILY	46774	ARID-like	coord: 40..122
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 340..745

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A-nodosum_M_contig1033	contig	A-nodosum_M_contig1033:33509..60719 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ascophyllum nodosum dioecious OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_A-nodosum_M_contig1033.13.4	mRNA_A-nodosum_M_contig1033.13.4	Ascophyllum nodosum dioecious	mRNA	A-nodosum_M_contig1033 33212..60748 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_A-nodosum_M_contig1033.13.4 ID=prot_A-nodosum_M_contig1033.13.4|Name=mRNA_A-nodosum_M_contig1033.13.4|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=765bp
MASMMEENAVVALEGLYSGPMKVRELAQAREIFAFLRANGQGKVLEKVPS
VDGGASVLDIVALFGVITSRGGVRRVQEQSLWKEVMTGLGYPFDRQTLFA
VSMQYKNFLYGYEQATLGARADVGGQQKSLPPQVQPPPPPQQQQQQQQAR
VGQVGGMAQPFDQYQRHLRQREFEQQQQQQQQQQQQQQQQLRHQRQMEVQ
QKMQQQRQQRREEQQRKEEEEQEQKRKLQEKQRFLVKQQQQQQLQMEQEQ
LFHHQQQRQQAQNQMILKQQQQQQQQQQQHHQHQYHRAQAAPYQSPPHRH
GAVPKPPGDDYHATSAFKYGNPRMRSAGPGGVSASISRADLPKALKSKNS
PREVVAAVNTLTLETYDAPEELMLEAIPGLLDAIFDLMDSLNPAVTQVIS
LAQTLRAQISKGAESTPALLDASFKCAERPGGLCGDCFSGLPPSGRGELL
LLLLNALRNASFVPSNERVIGHSARAIQHFVTLCLATSPEPAVFAATLDL
FGRVTKHVDIWGTRAAETDYEGCKWAEDSLSYLAPAHVRMVTTSASAGGG
GGGIISPSALEYVSSVALVFPTLVSMVDDEDRSRVLSGLAILSKLSQVEM
NKEAFDRVPDCFLERLVELLSIPKLGCDVLATKAGVSSQEWLEYNCRVLH
SEDAGSDEEVRDSALEVMSLLAGISDSLRSRLGIIPGCARTLTDVVLANT
RGIRIDPQARRMAALTLTSLGTVESNHPVMRPLYSDLLVAAARDPQAAEL
LFHGLKTVFPFVAA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001606	ARID_dom
IPR036431	ARID_dom_sf
IPR016024	ARM-type_fold