prot_A-nodosum_M_contig1033.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1033.1.1
Unique Nameprot_A-nodosum_M_contig1033.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length212
Homology
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BLAST of mRNA_A-nodosum_M_contig1033.1.1 vs. uniprot
Match: A0A6H5KBH4_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH4_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 6.420e-18
Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 0 
Query:  136 GDHCHNGESLSGSLYLRQSAARQWSWLGYSAKQFRSFAQECPPALDVGADQV 187
            GDHCHNGESL  S Y+R SA +QWSWLGYSAKQFRSFAQE PP LD+GA++V
Sbjct:  128 GDHCHNGESLCRSPYIRSSAGKQWSWLGYSAKQFRSFAQEFPPMLDIGAEEV 179
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BLAST of mRNA_A-nodosum_M_contig1033.1.1 vs. uniprot
Match: D8LEW9_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW9_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 1.160e-17
Identity = 51/97 (52.58%), Postives = 57/97 (58.76%), Query Frame = 0 
Query:   98 VAIGGDFQHAN---DSGGREAVWRRRPSGDRDTGGDRDRP----AGDHCHNGESLSGSLYLRQSAARQWSWLGYSAKQFRSFAQECPPALDVGADQV 187
            V  GGDF+H N    SG RE                         GDHCHNGESL  S ++R SA +QWSWLGYSAKQFRSFAQE PP LDVGA++V
Sbjct:   87 VGGGGDFRHTNGGSSSGDREXXXXXXXXXXXXXXXXXXXXXXXTGGDHCHNGESLCRSPFIRSSAGKQWSWLGYSAKQFRSFAQEFPPMLDVGAEEV 183
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1033.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBH4_9PHAE6.420e-1876.92USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LEW9_ECTSI1.160e-1752.58USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..140
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 112..139

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1033contigA-nodosum_M_contig1033:1782..2417 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1033.1.1mRNA_A-nodosum_M_contig1033.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1033 1509..3331 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1033.1.1 ID=prot_A-nodosum_M_contig1033.1.1|Name=mRNA_A-nodosum_M_contig1033.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=212bp
MAGKKGKSRGRKAKHGTPASPAASTQAAARGFKHSQLEGPFPDHNGDPPG
SGVAADRFADGSYLPSTVSSSRPGSQVSRVTGGDKPSTAQHQAGTALVAI
GGDFQHANDSGGREAVWRRRPSGDRDTGGDRDRPAGDHCHNGESLSGSLY
LRQSAARQWSWLGYSAKQFRSFAQECPPALDVGADQVTPLLYLSMHGTTA
VVLDRILLSKE*
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