mRNA_A-nodosum_M_contig1033.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1033.1.1
Unique NamemRNA_A-nodosum_M_contig1033.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1033.1.1 vs. uniprot
Match: A0A6H5KBH4_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH4_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.320e-16
Identity = 40/52 (76.92%), Postives = 45/52 (86.54%), Query Frame = 3 
Query:  531 GDHCHNGESLSGSLYLRQSAARQWSWLGYSAKQFRSFAQECPPALDVGADQV 686
            GDHCHNGESL  S Y+R SA +QWSWLGYSAKQFRSFAQE PP LD+GA++V
Sbjct:  128 GDHCHNGESLCRSPYIRSSAGKQWSWLGYSAKQFRSFAQEFPPMLDIGAEEV 179
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BLAST of mRNA_A-nodosum_M_contig1033.1.1 vs. uniprot
Match: D8LEW9_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW9_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 2.300e-16
Identity = 51/97 (52.58%), Postives = 57/97 (58.76%), Query Frame = 3 
Query:  417 VAIGGDFQHAN---DSGGREAVWRRRPSGDRDTGGDRDRP----AGDHCHNGESLSGSLYLRQSAARQWSWLGYSAKQFRSFAQECPPALDVGADQV 686
            V  GGDF+H N    SG RE                         GDHCHNGESL  S ++R SA +QWSWLGYSAKQFRSFAQE PP LDVGA++V
Sbjct:   87 VGGGGDFRHTNGGSSSGDREXXXXXXXXXXXXXXXXXXXXXXXTGGDHCHNGESLCRSPFIRSSAGKQWSWLGYSAKQFRSFAQEFPPMLDVGAEEV 183
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1033.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBH4_9PHAE1.320e-1676.92USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LEW9_ECTSI2.300e-1652.58USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1033contigA-nodosum_M_contig1033:1509..3331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LEW9
PFAMsUCH
Model size1034
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.91e-18
EggNOG OGsKOG1887@1|root,KOG1887@2759|Eukaryota
Descriptionprotein deubiquitination
Cds size636
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866401.4051843-UTR-A-nodosum_M_contig1033:1508..17811680866401.4051843-UTR-A-nodosum_M_contig1033:1508..1781Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1033 1509..1781 -
1680866401.4300659-UTR-A-nodosum_M_contig1033:2417..24641680866401.4300659-UTR-A-nodosum_M_contig1033:2417..2464Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1033 2418..2464 -
1680866401.4395368-UTR-A-nodosum_M_contig1033:3253..33311680866401.4395368-UTR-A-nodosum_M_contig1033:3253..3331Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1033 3254..3331 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866401.4164343-CDS-A-nodosum_M_contig1033:1781..24171680866401.4164343-CDS-A-nodosum_M_contig1033:1781..2417Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1033 1782..2417 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1033.1.1prot_A-nodosum_M_contig1033.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1033 1782..2417 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1033.1.1

>prot_A-nodosum_M_contig1033.1.1 ID=prot_A-nodosum_M_contig1033.1.1|Name=mRNA_A-nodosum_M_contig1033.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=212bp
MAGKKGKSRGRKAKHGTPASPAASTQAAARGFKHSQLEGPFPDHNGDPPG
SGVAADRFADGSYLPSTVSSSRPGSQVSRVTGGDKPSTAQHQAGTALVAI
GGDFQHANDSGGREAVWRRRPSGDRDTGGDRDRPAGDHCHNGESLSGSLY
LRQSAARQWSWLGYSAKQFRSFAQECPPALDVGADQVTPLLYLSMHGTTA
VVLDRILLSKE*
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mRNA from alignment at A-nodosum_M_contig1033:1509..3331-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1033.1.1 ID=mRNA_A-nodosum_M_contig1033.1.1|Name=mRNA_A-nodosum_M_contig1033.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1823bp|location=Sequence derived from alignment at A-nodosum_M_contig1033:1509..3331- (Ascophyllum nodosum dioecious)
GGAACAGTGAAAGAGCAAGAACGGAGAAGCTGCGTGCTTGAGAAGATCAA
GTGTGCTGTTATTCCATCGGAGTGAAGCGTGAGTATAGAGCTTATCCACC
CAGCGTTTTCTCTGACATCTTTGTTTGATAGCCCTCTCGAAAATTCAGCT
GTGTTTGTGTGGCGGTCACTACACGCCTCGGATGCGAAGGGTGTGTCCCC
AGTCCACCGAAGAGAACCTTCTCCGTTCGAAATTTGTAACCACAGTATTC
AAGGCTGTCTATGGTCTAGCTAAAACCATCGCCCCGCGATGCCCTTCTCA
CCTCTCTAAGCAGTCAGTACGTCATTTTTTTTGGAAGCTGTGAGAGTCGT
GTGTCTCTAACTTTCTCGTCAGTCTCTCTCTTCCCATTCTTCTCTGTTGA
ATCACGCCAATAGACACTCCTGTGTAAATAGCTCCGATATTACCCGTGCC
CACGGATGATCACCACGCACCGTTTAGCCTGTGCGTTTCTCATTCGGCTC
ATGTCTGAAGTGGATTACCTTTCTCGCGCCAATGTTCCGCTAGATTATAT
CGATTCTACCCTCTGCCCCGTGTACCGAAAGGGCGCTTGCACGAGATGCA
GATCTGTCCTTTTGATCCACAAACGTCGCGCTTCCTCATCTCATTCGAAC
CTACAGGTCGTTATGCGACAGACTGCACAAATTCTTACGGCAGTGATTAC
AATCACAACTACAGTAGTACTGCTGTAGTCTAGGGCTCTACTGGTACAGC
AGTACTGATGATGATGTTGTTGTCATGTGGTTTCCTACGAATACGAGAGA
ATCCTTGATCACCCGATGACATCCCTCAATCCCATCATGCACCACCCCTG
CCCGCGTCCTTTGCAAGGTACCAGCCGGGACACCACAGATACAGAGCACG
CGCTGCGATTGGCCATGGCTGGGAAGAAAGGCAAATCAAGGGGAAGGAAA
GCCAAGCATGGGACGCCGGCATCACCGGCAGCGTCGACACAGGCAGCGGC
CCGCGGGTTCAAACATTCGCAGCTTGAGGGCCCGTTCCCCGATCACAACG
GCGACCCTCCAGGCAGCGGCGTTGCAGCGGATCGTTTCGCGGATGGCTCG
TATCTGCCCTCTACCGTCTCGTCATCGCGTCCTGGATCTCAAGTATCCCG
CGTGACCGGTGGGGACAAGCCATCTACAGCCCAGCACCAGGCTGGGACTG
CGTTGGTGGCGATAGGCGGTGATTTTCAGCATGCCAATGACTCGGGAGGG
CGCGAAGCAGTCTGGCGGAGGAGGCCGTCGGGGGATCGAGACACCGGCGG
AGATCGGGACCGGCCCGCGGGGGATCACTGCCACAATGGCGAGTCGTTGA
GCGGGAGCCTCTACCTGAGGCAGTCGGCGGCGAGGCAGTGGTCATGGTTG
GGTTACTCGGCGAAGCAGTTTAGATCGTTCGCGCAGGAGTGCCCTCCGGC
ATTGGACGTTGGGGCAGATCAGGTGACACCCCTCCTCTACCTCTCAATGC
ATGGTACTACTGCTGTTGTACTCGATAGGATACTACTGTCTAAGGAATAA
CCTCCTCCGCTCTCCGTTTTTTTTATTTTCGTGAAGATCGGAGTTTTCCC
CAGACCAGTACAAAAAAAGACGTTCTCCCTCTCTGTGCGGGGATTTTTCG
GGGGATATTCTACAGCAATCTAGACTAGACTACAGGTACAACTGGTGTAC
AGTAGTAGCTTTACAGCAGTAGTCAAAACTAAACAACTCGATAAACAGCA
GTAGTAATACGGCTCAGGAGGTCTAGGCGCGTTCTGATTTTTCTTTAAAT
GCGAGTAATATGTTACAGAGTAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1033:1509..3331-

>mRNA_A-nodosum_M_contig1033.1.1 ID=mRNA_A-nodosum_M_contig1033.1.1|Name=mRNA_A-nodosum_M_contig1033.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at A-nodosum_M_contig1033:1509..3331- (Ascophyllum nodosum dioecious)
ATGGCTGGGAAGAAAGGCAAATCAAGGGGAAGGAAAGCCAAGCATGGGAC
GCCGGCATCACCGGCAGCGTCGACACAGGCAGCGGCCCGCGGGTTCAAAC
ATTCGCAGCTTGAGGGCCCGTTCCCCGATCACAACGGCGACCCTCCAGGC
AGCGGCGTTGCAGCGGATCGTTTCGCGGATGGCTCGTATCTGCCCTCTAC
CGTCTCGTCATCGCGTCCTGGATCTCAAGTATCCCGCGTGACCGGTGGGG
ACAAGCCATCTACAGCCCAGCACCAGGCTGGGACTGCGTTGGTGGCGATA
GGCGGTGATTTTCAGCATGCCAATGACTCGGGAGGGCGCGAAGCAGTCTG
GCGGAGGAGGCCGTCGGGGGATCGAGACACCGGCGGAGATCGGGACCGGC
CCGCGGGGGATCACTGCCACAATGGCGAGTCGTTGAGCGGGAGCCTCTAC
CTGAGGCAGTCGGCGGCGAGGCAGTGGTCATGGTTGGGTTACTCGGCGAA
GCAGTTTAGATCGTTCGCGCAGGAGTGCCCTCCGGCATTGGACGTTGGGG
CAGATCAGGTGACACCCCTCCTCTACCTCTCAATGCATGGTACTACTGCT
GTTGTACTCGATAGGATACTACTGTCTAAGGAATAA
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