prot_A-nodosum_M_contig103.68.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig103.68.1
Unique Nameprot_A-nodosum_M_contig103.68.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length230
Homology
BLAST of mRNA_A-nodosum_M_contig103.68.1 vs. uniprot
Match: UPI000A2A7226 (uncharacterized protein LOC110250634 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A7226)

HSP 1 Score: 120 bits (301), Expect = 1.880e-28
Identity = 81/231 (35.06%), Postives = 117/231 (50.65%), Query Frame = 0
Query:    1 VVEWLWFLDSQGKRTTIVHATSCPQVGQYSLSCSDRSLGCTRRYAFGSLQKSFVSKLKRAYVEILGRFEEWSPRDMRGNPVTGAVIDQYLAFATQEQLRAGVTPKQATPILRPDLQKLMRDMHTCLLCAA-QPVDRLAYARDMALFAIAFRTGSRGSDLAKILAAQVLHLPSNQGIVLNFQFTKTLRDGATHASRLVPDKDMPETCAVAATIRYAQAADSCGWDMSAGYLF 230
            V  +L + D  GK+   VH  SCP +    ++    +  C RR AF ++  S+V KL+  + E  GR  +W+     GNP     + QYL   T+EQLRA + PKQATP+    L  L R     L  A+ QPV+    ARD A F   F +  RGS+L  +  +++L  P + G++ N  + KTLRDG ++   +    + P+ C V A   Y   A     D+S GYLF
Sbjct:   72 VARFLVWKDPSGKKA--VHVBSCPNIASQKVT----TCACPRRLAFKTVD-SYVGKLRAIFNEA-GRTGDWNGMLGFGNPAASPEVQQYLKAVTEEQLRAHMRPKQATPLFLSKLLLLARLWDRKLANASTQPVNHFTLARDQAFFKALFFSFDRGSELGSVRTSEILRFPRDDGLLFNHVWGKTLRDGTSNVFGIRRHAN-PQICPVRAIETYVATAAELRIDLSDGYLF 293          
BLAST of mRNA_A-nodosum_M_contig103.68.1 vs. uniprot
Match: UPI00106AFE02 (uncharacterized protein LOC114544373 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106AFE02)

HSP 1 Score: 85.5 bits (210), Expect = 1.610e-15
Identity = 62/190 (32.63%), Postives = 94/190 (49.47%), Query Frame = 0
Query:    1 VVEWLWFLDSQGKRTTIVHATSCPQVGQYSLSCSDRS--LGCTRRYAFGSLQKSFVSKLKRAYVEILGRFEEWSPRDMRGNPVTGAVIDQYLAFATQEQLRAGVTPKQATPILRPDLQKLMRDMHTCLLCA-AQPVDRLAYARDMALFAIAFRTGSRGSDLAKILAAQVLHLPSNQGIVLNFQFTKTLRD 187
            ++ +L + D  GK  T++H   CP  G       DR     C RR A  ++  + ++KL+  ++    R ++ S      NP     + QYLA   +EQ +A ++PKQATP+     + L   +H  +      P     YARD+  F+I F +GSR SDL +I   QVL LP + G +    F KTLR+
Sbjct:  501 IIRFLIWRDQFGK--TVIHHRICPHFG-----VRDRQPPCDCPRRLAANTVDNN-IAKLRTIFLSAR-RPDQISDGLPPYNPAAHPSVKQYLASICEEQAKATISPKQATPLFHDKFKVLCTHLHQRIRQHDLSPTLCYLYARDLGFFSIDFYSGSRASDLGRIHTKQVLTLPDSGGFLFRQTFGKTLRN 681          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig103.68.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI000A2A72261.880e-2835.06uncharacterized protein LOC110250634 n=1 Tax=Exaip... [more]
UPI00106AFE021.610e-1532.63uncharacterized protein LOC114544373 n=1 Tax=Dendr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006936ALOG domainPFAMPF04852DUF640coord: 1..90
e-value: 3.7E-6
score: 27.1
IPR013762Integrase-like, catalytic domain superfamilyGENE3D1.10.443.10Intergrase catalytic corecoord: 105..230
e-value: 2.6E-6
score: 29.3
IPR011010DNA breaking-rejoining enzyme, catalytic coreSUPERFAMILY56349DNA breaking-rejoining enzymescoord: 110..218

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig103contigA-nodosum_M_contig103:743162..743851 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig103.68.1mRNA_A-nodosum_M_contig103.68.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig103 743162..743851 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig103.68.1 ID=prot_A-nodosum_M_contig103.68.1|Name=mRNA_A-nodosum_M_contig103.68.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=230bp
VVEWLWFLDSQGKRTTIVHATSCPQVGQYSLSCSDRSLGCTRRYAFGSLQ
KSFVSKLKRAYVEILGRFEEWSPRDMRGNPVTGAVIDQYLAFATQEQLRA
GVTPKQATPILRPDLQKLMRDMHTCLLCAAQPVDRLAYARDMALFAIAFR
TGSRGSDLAKILAAQVLHLPSNQGIVLNFQFTKTLRDGATHASRLVPDKD
MPETCAVAATIRYAQAADSCGWDMSAGYLF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006936ALOG_dom
IPR013762Integrase-like_cat_sf
IPR011010DNA_brk_join_enz