mRNA_A-nodosum_M_contig103.68.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig103.68.1
Unique NamemRNA_A-nodosum_M_contig103.68.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig103.68.1 vs. uniprot
Match: UPI000A2A7226 (uncharacterized protein LOC110250634 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A7226)

HSP 1 Score: 120 bits (301), Expect = 1.880e-28
Identity = 81/231 (35.06%), Postives = 117/231 (50.65%), Query Frame = 1 
Query:    1 VVEWLWFLDSQGKRTTIVHATSCPQVGQYSLSCSDRSLGCTRRYAFGSLQKSFVSKLKRAYVEILGRFEEWSPRDMRGNPVTGAVIDQYLAFATQEQLRAGVTPKQATPILRPDLQKLMRDMHTCLLCAA-QPVDRLAYARDMALFAIAFRTGSRGSDLAKILAAQVLHLPSNQGIVLNFQFTKTLRDGATHASRLVPDKDMPETCAVAATIRYAQAADSCGWDMSAGYLF 690
            V  +L + D  GK+   VH  SCP +    ++    +  C RR AF ++  S+V KL+  + E  GR  +W+     GNP     + QYL   T+EQLRA + PKQATP+    L  L R     L  A+ QPV+    ARD A F   F +  RGS+L  +  +++L  P + G++ N  + KTLRDG ++   +    + P+ C V A   Y   A     D+S GYLF
Sbjct:   72 VARFLVWKDPSGKKA--VHVBSCPNIASQKVT----TCACPRRLAFKTVD-SYVGKLRAIFNEA-GRTGDWNGMLGFGNPAASPEVQQYLKAVTEEQLRAHMRPKQATPLFLSKLLLLARLWDRKLANASTQPVNHFTLARDQAFFKALFFSFDRGSELGSVRTSEILRFPRDDGLLFNHVWGKTLRDGTSNVFGIRRHAN-PQICPVRAIETYVATAAELRIDLSDGYLF 293
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BLAST of mRNA_A-nodosum_M_contig103.68.1 vs. uniprot
Match: UPI00106AFE02 (uncharacterized protein LOC114544373 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106AFE02)

HSP 1 Score: 85.5 bits (210), Expect = 1.610e-15
Identity = 62/190 (32.63%), Postives = 94/190 (49.47%), Query Frame = 1 
Query:    1 VVEWLWFLDSQGKRTTIVHATSCPQVGQYSLSCSDRS--LGCTRRYAFGSLQKSFVSKLKRAYVEILGRFEEWSPRDMRGNPVTGAVIDQYLAFATQEQLRAGVTPKQATPILRPDLQKLMRDMHTCLLCA-AQPVDRLAYARDMALFAIAFRTGSRGSDLAKILAAQVLHLPSNQGIVLNFQFTKTLRD 561
            ++ +L + D  GK  T++H   CP  G       DR     C RR A  ++  + ++KL+  ++    R ++ S      NP     + QYLA   +EQ +A ++PKQATP+     + L   +H  +      P     YARD+  F+I F +GSR SDL +I   QVL LP + G +    F KTLR+
Sbjct:  501 IIRFLIWRDQFGK--TVIHHRICPHFG-----VRDRQPPCDCPRRLAANTVDNN-IAKLRTIFLSAR-RPDQISDGLPPYNPAAHPSVKQYLASICEEQAKATISPKQATPLFHDKFKVLCTHLHQRIRQHDLSPTLCYLYARDLGFFSIDFYSGSRASDLGRIHTKQVLTLPDSGGFLFRQTFGKTLRN 681
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig103.68.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI000A2A72261.880e-2835.06uncharacterized protein LOC110250634 n=1 Tax=Exaip... [more]
UPI00106AFE021.610e-1532.63uncharacterized protein LOC114544373 n=1 Tax=Dendr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig103contigA-nodosum_M_contig103:743162..743851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7739.XP_002592500.1
PFAMsDUF640
Model size690
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.03e-20
EggNOG OGsKOG0297@1|root,KOG0297@2759|Eukaryota,3AMDY@33154|Opisthokonta,3C0VI@33208|Metazoa
DescriptionProtein of unknown function (DUF640)
Cds size690
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866396.2844076-CDS-A-nodosum_M_contig103:743161..7438511680866396.2844076-CDS-A-nodosum_M_contig103:743161..743851Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig103 743162..743851 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig103.68.1prot_A-nodosum_M_contig103.68.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig103 743162..743851 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig103.68.1

>prot_A-nodosum_M_contig103.68.1 ID=prot_A-nodosum_M_contig103.68.1|Name=mRNA_A-nodosum_M_contig103.68.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=230bp
VVEWLWFLDSQGKRTTIVHATSCPQVGQYSLSCSDRSLGCTRRYAFGSLQ
KSFVSKLKRAYVEILGRFEEWSPRDMRGNPVTGAVIDQYLAFATQEQLRA
GVTPKQATPILRPDLQKLMRDMHTCLLCAAQPVDRLAYARDMALFAIAFR
TGSRGSDLAKILAAQVLHLPSNQGIVLNFQFTKTLRDGATHASRLVPDKD
MPETCAVAATIRYAQAADSCGWDMSAGYLF
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mRNA from alignment at A-nodosum_M_contig103:743162..743851-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig103.68.1 ID=mRNA_A-nodosum_M_contig103.68.1|Name=mRNA_A-nodosum_M_contig103.68.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=690bp|location=Sequence derived from alignment at A-nodosum_M_contig103:743162..743851- (Ascophyllum nodosum dioecious)
GTGGTGGAATGGTTATGGTTCCTCGATTCGCAAGGCAAAAGGACTACGAT
TGTTCATGCGACGTCGTGCCCGCAGGTAGGACAGTATTCTCTCTCCTGTT
CAGACCGCTCGCTCGGCTGTACGCGGCGGTACGCGTTTGGATCCCTGCAG
AAGTCATTCGTGTCCAAACTCAAACGGGCTTACGTGGAAATCCTAGGCCG
CTTTGAAGAATGGTCGCCGCGGGACATGCGCGGTAACCCAGTCACGGGTG
CAGTAATCGACCAATATCTCGCCTTTGCGACGCAGGAGCAACTGCGAGCG
GGAGTTACACCCAAACAGGCGACCCCCATCCTGCGCCCGGACTTGCAAAA
ATTAATGCGAGATATGCACACGTGTCTGCTCTGTGCGGCGCAACCAGTTG
ACCGTCTAGCTTACGCGCGAGACATGGCTTTGTTCGCGATCGCGTTTCGC
ACCGGAAGCCGAGGTAGCGACCTCGCTAAGATATTAGCCGCTCAGGTTCT
CCATCTGCCTTCCAACCAAGGGATAGTTCTAAACTTCCAATTTACAAAGA
CACTTCGAGATGGGGCCACGCACGCCTCCCGCCTGGTCCCGGATAAGGAC
ATGCCAGAAACGTGCGCGGTAGCCGCGACAATTCGCTACGCGCAGGCCGC
TGATTCATGCGGATGGGATATGTCCGCGGGGTACCTTTTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig103:743162..743851-

>mRNA_A-nodosum_M_contig103.68.1 ID=mRNA_A-nodosum_M_contig103.68.1|Name=mRNA_A-nodosum_M_contig103.68.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at A-nodosum_M_contig103:743162..743851- (Ascophyllum nodosum dioecious)
GTGGTGGAATGGTTATGGTTCCTCGATTCGCAAGGCAAAAGGACTACGAT
TGTTCATGCGACGTCGTGCCCGCAGGTAGGACAGTATTCTCTCTCCTGTT
CAGACCGCTCGCTCGGCTGTACGCGGCGGTACGCGTTTGGATCCCTGCAG
AAGTCATTCGTGTCCAAACTCAAACGGGCTTACGTGGAAATCCTAGGCCG
CTTTGAAGAATGGTCGCCGCGGGACATGCGCGGTAACCCAGTCACGGGTG
CAGTAATCGACCAATATCTCGCCTTTGCGACGCAGGAGCAACTGCGAGCG
GGAGTTACACCCAAACAGGCGACCCCCATCCTGCGCCCGGACTTGCAAAA
ATTAATGCGAGATATGCACACGTGTCTGCTCTGTGCGGCGCAACCAGTTG
ACCGTCTAGCTTACGCGCGAGACATGGCTTTGTTCGCGATCGCGTTTCGC
ACCGGAAGCCGAGGTAGCGACCTCGCTAAGATATTAGCCGCTCAGGTTCT
CCATCTGCCTTCCAACCAAGGGATAGTTCTAAACTTCCAATTTACAAAGA
CACTTCGAGATGGGGCCACGCACGCCTCCCGCCTGGTCCCGGATAAGGAC
ATGCCAGAAACGTGCGCGGTAGCCGCGACAATTCGCTACGCGCAGGCCGC
TGATTCATGCGGATGGGATATGTCCGCGGGGTACCTTTTC
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