prot_A-nodosum_M_contig103.47.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig103.47.1
Unique Nameprot_A-nodosum_M_contig103.47.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length215
Homology
BLAST of mRNA_A-nodosum_M_contig103.47.1 vs. uniprot
Match: D7G1Y9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y9_ECTSI)

HSP 1 Score: 364 bits (934), Expect = 2.560e-126
Identity = 180/214 (84.11%), Postives = 202/214 (94.39%), Query Frame = 0
Query:    1 MEGSSIQKRLSDEGHKLYRIRQTCMKMLEKRGYNVLKEHISMTSEKFCEAFGPDPSRESMTLLVEKVDDPVDQIFVFFPEDEKVGVKPIRSYSDKMLAEDVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVPQHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVARFYGMQRGQVCKITRPSETAGRYVTYRLCI 214
            MEGS    RLSDEGHK+YRIRQTCMKMLEKRGYNVL+EH+SMTSE F + +GP+P+R  +TLLVEKVDDP+DQIFVFFP+DEKVGVKPIRSYS+KML E+VK+AIIV+KGGITPFARSAI ELCAQREVQVEDFKD+ELMLDITEHTLVP+H VL++EQKA+LLKRYKLKDTQLPRIQ+TDPVARF+GMQ+GQVCKITRPSETAGRYVTYRLCI
Sbjct:    1 MEGSGP--RLSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQKGQVCKITRPSETAGRYVTYRLCI 212          
BLAST of mRNA_A-nodosum_M_contig103.47.1 vs. uniprot
Match: A0A835YLJ3_9STRA (RNA polymerase Rpb5, C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLJ3_9STRA)

HSP 1 Score: 289 bits (739), Expect = 1.310e-96
Identity = 144/209 (68.90%), Postives = 175/209 (83.73%), Query Frame = 0
Query:   10 LSDEGHKLYRIRQTCMKMLEKRGYNVLKEHIS----MTSEKFCEAFGPDPSRESMTLLVEKVDDPVDQIFVFFPEDEKVGVKPIRSYSDKMLAEDVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVPQHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVARFYGMQRGQVCKITRPSETAGRYVTYRLCI 214
            LS EG KL+RIR+TC+KML KRGYNV  EHIS      +++F E FG +PSRE MT+LVEKVDDP D+IFVFFP++EKVGVK IR+Y D+M  E+V+K+IIVV+GG+TP +R A  +LC QR VQ+EDFKD+ELM+DIT+H LVP+H VL  E+KA+LLKRYKL DTQLPRI +TDPVAR+YG+QRGQV KI RPSETAGRYVTYRLC+
Sbjct:    5 LSLEGSKLFRIRKTCLKMLSKRGYNVADEHISGSNASATQRFIEQFGDNPSREQMTILVEKVDDPSDRIFVFFPDEEKVGVKTIRTYGDRMKDENVRKSIIVVRGGMTPLSRDANAQLCQQRGVQIEDFKDAELMVDITDHVLVPEHQVLNNEEKAELLKRYKLTDTQLPRIHSTDPVARYYGLQRGQVVKIIRPSETAGRYVTYRLCM 213          
BLAST of mRNA_A-nodosum_M_contig103.47.1 vs. uniprot
Match: W4GMP1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4GMP1_9STRA)

HSP 1 Score: 247 bits (630), Expect = 3.770e-80
Identity = 123/202 (60.89%), Postives = 160/202 (79.21%), Query Frame = 0
Query:   10 LSDEGHKLYRIRQTCMKMLEKRGYNVLKEHISMTSEKFCEAFGPDPSRESMTLLVEKVDDPVDQIFVFFPEDEKVGVKPIRSYSDKMLAEDVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVPQHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVARFYGMQRGQVCKITRPSETAGRYVTYR 211
            L+ E  KL+R+R+T +KML  RGY V +E +  T E F   FG +P+R++MT+LVEKVDDP D +FVF+PED KVGVKPIR+Y ++M  E+V KAI++V+ GITPFA+ A+ E+  +   +++ FK++EL++DITEHTLVP H VLT E+K  LLKRYKLKDTQLPR+Q +DP+AR+YGM RGQV KI RPSETAGRYVTYR
Sbjct:    3 LNPEASKLFRVRKTVVKMLHNRGYIVSEEELHRTPEGFIGQFGENPTRDTMTILVEKVDDPSDNLFVFYPEDAKVGVKPIRNYCNRMKDENVTKAILIVQDGITPFAKQALNEMAPR--YKIDHFKENELLVDITEHTLVPVHKVLTKEEKLALLKRYKLKDTQLPRMQASDPIARYYGMSRGQVVKIIRPSETAGRYVTYR 202          
BLAST of mRNA_A-nodosum_M_contig103.47.1 vs. uniprot
Match: K3WP89_GLOUD (Uncharacterized protein n=27 Tax=Oomycota TaxID=4762 RepID=K3WP89_GLOUD)

HSP 1 Score: 245 bits (626), Expect = 1.580e-79
Identity = 122/202 (60.40%), Postives = 159/202 (78.71%), Query Frame = 0
Query:   10 LSDEGHKLYRIRQTCMKMLEKRGYNVLKEHISMTSEKFCEAFGPDPSRESMTLLVEKVDDPVDQIFVFFPEDEKVGVKPIRSYSDKMLAEDVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVPQHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVARFYGMQRGQVCKITRPSETAGRYVTYR 211
            L+ E  +LYR+R+T +KML  RGY V +  + MT E F   FG +P+RE MT+LVEK+DDP D +FVFFPED KVGVKPIR++ ++M  E+V KAI+VV+ GITPFAR A+ E+  +   ++E FK++EL++DITEHTLVP H VL  ++KA LLKRY++KD+QLPR+Q TDP+AR+YG+ RGQV KI RPSETAGRYVTYR
Sbjct:    4 LTPEASRLYRVRKTTVKMLHNRGYIVSENELVMTPESFQHQFGDNPTREMMTILVEKIDDPSDNLFVFFPEDTKVGVKPIRTFCNRMKDENVSKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLNRDEKAALLKRYRIKDSQLPRMQVTDPIARYYGITRGQVVKIIRPSETAGRYVTYR 203          
BLAST of mRNA_A-nodosum_M_contig103.47.1 vs. uniprot
Match: A0A482UUV9_9ARCH (DNA-directed RNA polymerase subunit Rpo5 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UUV9_9ARCH)

HSP 1 Score: 244 bits (622), Expect = 7.560e-79
Identity = 120/205 (58.54%), Postives = 163/205 (79.51%), Query Frame = 0
Query:   10 LSDEGHKLYRIRQTCMKMLEKRGYNVLKEHISMTSEKFCEAFGPDPSRESMTLLVEKVDDPVDQIFVFFPEDEKVGVKPIRSYSDKMLAEDVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVPQHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVARFYGMQRGQVCKITRPSETAGRYVTYRLCI 214
            L+ E  K++R+R+TC+KML KRGY V +  + M++++F + FG  PSR+S+T+L EK DDP DQIFVFFPEDEKVGV PI+ Y  +M   +V +AIIVVK  +TPFAR+A+ E+ + R  +VE F+D+EL++DITEH LVP+H VLT +QK +LL+RY+LK +QLPRIQ  DP+AR+ G+++GQV KI RPSETAGRYVTYR+C+
Sbjct:    8 LNPEASKMFRVRKTCLKMLSKRGYVVDENALQMSTDQFRDKFGETPSRDSLTILAEKSDDPTDQIFVFFPEDEKVGVNPIKIYCQRMKTANVYRAIIVVKINLTPFARTAVKEM-SLRGYRVEYFRDAELLVDITEHKLVPEHIVLTDQQKLELLERYRLKVSQLPRIQIADPIARYMGLRQGQVVKIVRPSETAGRYVTYRICV 211          
BLAST of mRNA_A-nodosum_M_contig103.47.1 vs. uniprot
Match: A0A067CT03_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CT03_SAPPC)

HSP 1 Score: 243 bits (620), Expect = 1.380e-78
Identity = 120/202 (59.41%), Postives = 159/202 (78.71%), Query Frame = 0
Query:   10 LSDEGHKLYRIRQTCMKMLEKRGYNVLKEHISMTSEKFCEAFGPDPSRESMTLLVEKVDDPVDQIFVFFPEDEKVGVKPIRSYSDKMLAEDVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVPQHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVARFYGMQRGQVCKITRPSETAGRYVTYR 211
            L+ E  +LYR+R+T +KML  RGY V  + +  T++ F   FG +P+RE MT+LVEKVDDP D +FVF+P+D KVGVKPIR+Y ++M  E+V KAI++V+ GITPFA+ A+ E+  +   +++ FK++EL++DITEHTLVP H VLT E+K  LLKRYKLKD+QLPR+Q +DP+AR+YGM RGQV KI RPSETAGRYVTYR
Sbjct:    6 LNPEASRLYRVRKTVVKMLANRGYIVSDDELKRTTDGFAAQFGENPTREMMTILVEKVDDPSDNLFVFYPDDAKVGVKPIRTYCNRMKDENVTKAILIVQDGITPFAKQALNEMAPR--YKIDHFKETELLVDITEHTLVPVHKVLTREEKIALLKRYKLKDSQLPRMQVSDPIARYYGMTRGQVVKIIRPSETAGRYVTYR 205          
BLAST of mRNA_A-nodosum_M_contig103.47.1 vs. uniprot
Match: A0A5D6XUM4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUM4_9STRA)

HSP 1 Score: 247 bits (630), Expect = 1.690e-77
Identity = 123/205 (60.00%), Postives = 162/205 (79.02%), Query Frame = 0
Query:   10 LSDEGHKLYRIRQTCMKMLEKRGYNVLKEHISMTSEKFCEAFGPDPSRESMTLLVEKVDDPVDQIFVFFPEDEKVGVKPIRSYSDKMLAEDVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVPQHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVARFYGMQRGQVCKITRPSETAGRYVTYRLCI 214
            L+ E  +L+R+R+T +KML  RGY V +  + MT E F + FG +P+RE MT+LVEK+DDP D +FVFFPED KVGVKPIR+Y ++M  E+V KAI+VV+ GITPFAR A+ E+  +   ++E FK++EL++DITEHTLVP H VL+ ++KA LLKRY++KD+QLPR+Q TDP+AR+YG+ RGQV KI RPSETAGRYVTYR  I
Sbjct:    4 LTPEASRLFRVRKTTVKMLHNRGYIVSENELVMTPESFQQQFGDNPTREMMTILVEKIDDPSDNLFVFFPEDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLSRDEKAALLKRYRIKDSQLPRMQVTDPIARYYGITRGQVVKIIRPSETAGRYVTYRAVI 206          
BLAST of mRNA_A-nodosum_M_contig103.47.1 vs. uniprot
Match: A0A2P4Y6Z7_9STRA (DNA-directed RNA polymerase I, II, and III subunit RPABC1 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y6Z7_9STRA)

HSP 1 Score: 243 bits (619), Expect = 1.840e-77
Identity = 123/205 (60.00%), Postives = 159/205 (77.56%), Query Frame = 0
Query:   10 LSDEGHKLYRIRQTCMKMLEKRGYNVLKEHISMTSEKFCEAFGPDPSRESMTLLVEKVDDPVDQIFVFFPEDEKVGVKPIRSYSDKMLAEDVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVPQHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVARFYGMQRGQVCKITRPSETAGRYVTYRLCI 214
            L+ E  +LYR+R+T +KML  R Y V +  + MT E F   FG +P+RE MT+LVEK+DDP D +FVFFPED KVGVKPIR+Y ++M  E+V KAI+VV+ GITPFAR A+ E+  +   ++E FK++EL++DITEHTLVP H VL  ++KA LLKRY+++D+QLPR+Q TDP+AR+YGM RGQV KI RPSETAGRYVTYR  I
Sbjct:   75 LTPEASRLYRVRKTTVKMLHNRDYIVSENELVMTPEAFQTQFGDNPTREMMTILVEKMDDPSDNLFVFFPEDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLGRDEKAALLKRYRIRDSQLPRMQVTDPIARYYGMTRGQVVKIIRPSETAGRYVTYRAVI 277          
BLAST of mRNA_A-nodosum_M_contig103.47.1 vs. uniprot
Match: B7FSY0_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FSY0_PHATC)

HSP 1 Score: 240 bits (612), Expect = 4.370e-77
Identity = 122/210 (58.10%), Postives = 160/210 (76.19%), Query Frame = 0
Query:    5 SIQKRLSDEGHKLYRIRQTCMKMLEKRGYNVLKEHISMTSEKFCEAFGPDPSRESMTLLVEKVDDPVDQIFVFFPEDEKVGVKPIRSYSDKMLAEDVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVPQHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVARFYGMQRGQVCKITRPSETAGRYVTYRLCI 214
            +IQ  L+ E  +L+R+ +T   ML+KRGY V K    +T   F E FG  PSRE++T+LVEK DD  +Q+F+FFPEDEKVGVKPI+ Y+D+M AE V  AII+++  ITPFA+ A+ E+      ++E FK+SEL++DIT+H LVP H VLT  +K +LLKRY+LKD+QLPRIQ+ DPVAR+YGM+RGQV KI RPSETAGRYVTYR+C+
Sbjct:   21 TIQGGLTPEAARLFRVYRTIANMLDKRGYMVPKTLREITPSAFKERFGEYPSRENLTILVEKADDDTNQLFIFFPEDEKVGVKPIKVYTDRMRAESVSNAIIILRVDITPFAKQAVQEM--SDSFRIEHFKESELLVDITKHQLVPVHQVLTPNEKNELLKRYRLKDSQLPRIQSNDPVARYYGMRRGQVVKIIRPSETAGRYVTYRICM 228          
BLAST of mRNA_A-nodosum_M_contig103.47.1 vs. uniprot
Match: A0A1Z5K1Q5_FISSO (DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K1Q5_FISSO)

HSP 1 Score: 239 bits (609), Expect = 1.130e-76
Identity = 124/206 (60.19%), Postives = 160/206 (77.67%), Query Frame = 0
Query:   10 LSDEGHKLYRIRQTCMKMLEKRGYNVLKEHISMTSEKFCEAFGPDP-SRESMTLLVEKVDDPVDQIFVFFPEDEKVGVKPIRSYSDKMLAEDVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVPQHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVARFYGMQRGQVCKITRPSETAGRYVTYRLCI 214
            LS    +L+R+ +T   +LE+RGY V +E   +T  +F + FG D  +RE++TLLVEK DD  DQ+FVFFPEDEKVGVKPI+ Y+D+M AE V  AI+V+K  ITPFA+ A+ E+      ++E FK+SEL++DIT+H LVPQH VLTA +KA+LLKRY+LKDTQLPRIQ  DP+AR+YGM+RGQV KI RPSETAGRYVTYR+C+
Sbjct:   22 LSPSAARLFRVYRTMANLLEQRGYMVPRELREITPAQFQQKFGNDSINRETLTLLVEKADDEHDQLFVFFPEDEKVGVKPIKVYTDRMRAEGVSNAIMVLKVDITPFAKQAVQEM--SDSFRMEHFKESELLVDITQHQLVPQHQVLTAAEKAELLKRYRLKDTQLPRIQPNDPIARYYGMKRGQVVKIIRPSETAGRYVTYRVCM 225          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig103.47.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1Y9_ECTSI2.560e-12684.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YLJ3_9STRA1.310e-9668.90RNA polymerase Rpb5, C-terminal domain-containing ... [more]
W4GMP1_9STRA3.770e-8060.89Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
K3WP89_GLOUD1.580e-7960.40Uncharacterized protein n=27 Tax=Oomycota TaxID=47... [more]
A0A482UUV9_9ARCH7.560e-7958.54DNA-directed RNA polymerase subunit Rpo5 n=1 Tax=a... [more]
A0A067CT03_SAPPC1.380e-7859.41Uncharacterized protein n=4 Tax=Saprolegniaceae Ta... [more]
A0A5D6XUM4_9STRA1.690e-7760.00Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2P4Y6Z7_9STRA1.840e-7760.00DNA-directed RNA polymerase I, II, and III subunit... [more]
B7FSY0_PHATC4.370e-7758.10Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5K1Q5_FISSO1.130e-7660.19DNA-directed RNA polymerases I, II, and III subuni... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005571RNA polymerase, Rpb5, N-terminalPFAMPF03871RNA_pol_Rpb5_Ncoord: 12..96
e-value: 1.5E-26
score: 92.9
IPR036710RNA polymerase Rpb5, N-terminal domain superfamilyGENE3D3.40.1340.10coord: 9..138
e-value: 9.9E-37
score: 128.1
IPR036710RNA polymerase Rpb5, N-terminal domain superfamilySUPERFAMILY53036Eukaryotic RPB5 N-terminal domaincoord: 12..141
IPR035913RPB5-like RNA polymerase subunit superfamilyGENE3D3.90.940.20coord: 139..214
e-value: 1.5E-33
score: 116.3
IPR035913RPB5-like RNA polymerase subunit superfamilySUPERFAMILY55287RPB5-like RNA polymerase subunitcoord: 139..214
IPR000783RNA polymerase, subunit H/Rpb5 C-terminalPFAMPF01191RNA_pol_Rpb5_Ccoord: 142..213
e-value: 3.2E-32
score: 110.2
IPR014381DNA-directed RNA polymerase subunit Rpo5/Rpb5PIRSFPIRSF000747RPB5coord: 7..214
e-value: 4.3E-73
score: 243.2
IPR014381DNA-directed RNA polymerase subunit Rpo5/Rpb5PANTHERPTHR10535DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1coord: 11..214
IPR014381DNA-directed RNA polymerase subunit Rpo5/Rpb5HAMAPMF_00025RNApol_RpoH_RPB5coord: 141..214
score: 20.681164

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig103contigA-nodosum_M_contig103:430974..439643 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig103.47.1mRNA_A-nodosum_M_contig103.47.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig103 430836..440063 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig103.47.1 ID=prot_A-nodosum_M_contig103.47.1|Name=mRNA_A-nodosum_M_contig103.47.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=215bp
MEGSSIQKRLSDEGHKLYRIRQTCMKMLEKRGYNVLKEHISMTSEKFCEA
FGPDPSRESMTLLVEKVDDPVDQIFVFFPEDEKVGVKPIRSYSDKMLAED
VKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVP
QHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVARFYGMQRGQVCKITRP
SETAGRYVTYRLCI*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005571RNA_pol_Rpb5_N
IPR036710RNA_pol_Rpb5_N_sf
IPR035913RPB5-like_sf
IPR000783RNA_pol_subH/Rpb5_C
IPR014381Arch_Rpo5/euc_Rpb5