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Homology
BLAST of mRNA_A-nodosum_M_contig103.47.1 vs. uniprot
Match: D7G1Y9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y9_ECTSI) HSP 1 Score: 366 bits (939), Expect = 4.970e-124 Identity = 180/214 (84.11%), Postives = 202/214 (94.39%), Query Frame = 1
Query: 139 MEGSSIQKRLSDEGHKLYRIRQTCMKMLEKRGYNVLKEHISMTSEKFCEAFGPDPSRESMTLLVEKVDDPVDQIFVFFPEDEKVGVKPIRSYSDKMLAEDVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVPQHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVARFYGMQRGQVCKITRPSETAGRYVTYRLCI 780
MEGS RLSDEGHK+YRIRQTCMKMLEKRGYNVL+EH+SMTSE F + +GP+P+R +TLLVEKVDDP+DQIFVFFP+DEKVGVKPIRSYS+KML E+VK+AIIV+KGGITPFARSAI ELCAQREVQVEDFKD+ELMLDITEHTLVP+H VL++EQKA+LLKRYKLKDTQLPRIQ+TDPVARF+GMQ+GQVCKITRPSETAGRYVTYRLCI
Sbjct: 1 MEGSG--PRLSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQKGQVCKITRPSETAGRYVTYRLCI 212
BLAST of mRNA_A-nodosum_M_contig103.47.1 vs. uniprot
Match: A0A835YLJ3_9STRA (RNA polymerase Rpb5, C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLJ3_9STRA) HSP 1 Score: 291 bits (744), Expect = 1.830e-94 Identity = 144/213 (67.61%), Postives = 178/213 (83.57%), Query Frame = 1
Query: 154 IQKRLSDEGHKLYRIRQTCMKMLEKRGYNVLKEHIS----MTSEKFCEAFGPDPSRESMTLLVEKVDDPVDQIFVFFPEDEKVGVKPIRSYSDKMLAEDVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVPQHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVARFYGMQRGQVCKITRPSETAGRYVTYRLCI 780
+ ++LS EG KL+RIR+TC+KML KRGYNV EHIS +++F E FG +PSRE MT+LVEKVDDP D+IFVFFP++EKVGVK IR+Y D+M E+V+K+IIVV+GG+TP +R A +LC QR VQ+EDFKD+ELM+DIT+H LVP+H VL E+KA+LLKRYKL DTQLPRI +TDPVAR+YG+QRGQV KI RPSETAGRYVTYRLC+
Sbjct: 1 MAQQLSLEGSKLFRIRKTCLKMLSKRGYNVADEHISGSNASATQRFIEQFGDNPSREQMTILVEKVDDPSDRIFVFFPDEEKVGVKTIRTYGDRMKDENVRKSIIVVRGGMTPLSRDANAQLCQQRGVQIEDFKDAELMVDITDHVLVPEHQVLNNEEKAELLKRYKLTDTQLPRIHSTDPVARYYGLQRGQVVKIIRPSETAGRYVTYRLCM 213
BLAST of mRNA_A-nodosum_M_contig103.47.1 vs. uniprot
Match: W4GMP1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4GMP1_9STRA) HSP 1 Score: 247 bits (631), Expect = 1.590e-77 Identity = 123/205 (60.00%), Postives = 161/205 (78.54%), Query Frame = 1
Query: 166 LSDEGHKLYRIRQTCMKMLEKRGYNVLKEHISMTSEKFCEAFGPDPSRESMTLLVEKVDDPVDQIFVFFPEDEKVGVKPIRSYSDKMLAEDVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVPQHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVARFYGMQRGQVCKITRPSETAGRYVTYRLCI 780
L+ E KL+R+R+T +KML RGY V +E + T E F FG +P+R++MT+LVEKVDDP D +FVF+PED KVGVKPIR+Y ++M E+V KAI++V+ GITPFA+ A+ E+ + +++ FK++EL++DITEHTLVP H VLT E+K LLKRYKLKDTQLPR+Q +DP+AR+YGM RGQV KI RPSETAGRYVTYR +
Sbjct: 3 LNPEASKLFRVRKTVVKMLHNRGYIVSEEELHRTPEGFIGQFGENPTRDTMTILVEKVDDPSDNLFVFYPEDAKVGVKPIRNYCNRMKDENVTKAILIVQDGITPFAKQALNEMAPR--YKIDHFKENELLVDITEHTLVPVHKVLTKEEKLALLKRYKLKDTQLPRMQASDPIARYYGMSRGQVVKIIRPSETAGRYVTYRAVM 205
BLAST of mRNA_A-nodosum_M_contig103.47.1 vs. uniprot
Match: K3WP89_GLOUD (Uncharacterized protein n=27 Tax=Oomycota TaxID=4762 RepID=K3WP89_GLOUD) HSP 1 Score: 246 bits (627), Expect = 6.600e-77 Identity = 122/205 (59.51%), Postives = 160/205 (78.05%), Query Frame = 1
Query: 166 LSDEGHKLYRIRQTCMKMLEKRGYNVLKEHISMTSEKFCEAFGPDPSRESMTLLVEKVDDPVDQIFVFFPEDEKVGVKPIRSYSDKMLAEDVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVPQHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVARFYGMQRGQVCKITRPSETAGRYVTYRLCI 780
L+ E +LYR+R+T +KML RGY V + + MT E F FG +P+RE MT+LVEK+DDP D +FVFFPED KVGVKPIR++ ++M E+V KAI+VV+ GITPFAR A+ E+ + ++E FK++EL++DITEHTLVP H VL ++KA LLKRY++KD+QLPR+Q TDP+AR+YG+ RGQV KI RPSETAGRYVTYR +
Sbjct: 4 LTPEASRLYRVRKTTVKMLHNRGYIVSENELVMTPESFQHQFGDNPTREMMTILVEKIDDPSDNLFVFFPEDTKVGVKPIRTFCNRMKDENVSKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLNRDEKAALLKRYRIKDSQLPRMQVTDPIARYYGITRGQVVKIIRPSETAGRYVTYRAVM 206
BLAST of mRNA_A-nodosum_M_contig103.47.1 vs. uniprot
Match: A0A482UUV9_9ARCH (DNA-directed RNA polymerase subunit Rpo5 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UUV9_9ARCH) HSP 1 Score: 244 bits (624), Expect = 2.200e-76 Identity = 120/205 (58.54%), Postives = 163/205 (79.51%), Query Frame = 1
Query: 166 LSDEGHKLYRIRQTCMKMLEKRGYNVLKEHISMTSEKFCEAFGPDPSRESMTLLVEKVDDPVDQIFVFFPEDEKVGVKPIRSYSDKMLAEDVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVPQHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVARFYGMQRGQVCKITRPSETAGRYVTYRLCI 780
L+ E K++R+R+TC+KML KRGY V + + M++++F + FG PSR+S+T+L EK DDP DQIFVFFPEDEKVGV PI+ Y +M +V +AIIVVK +TPFAR+A+ E+ + R +VE F+D+EL++DITEH LVP+H VLT +QK +LL+RY+LK +QLPRIQ DP+AR+ G+++GQV KI RPSETAGRYVTYR+C+
Sbjct: 8 LNPEASKMFRVRKTCLKMLSKRGYVVDENALQMSTDQFRDKFGETPSRDSLTILAEKSDDPTDQIFVFFPEDEKVGVNPIKIYCQRMKTANVYRAIIVVKINLTPFARTAVKEM-SLRGYRVEYFRDAELLVDITEHKLVPEHIVLTDQQKLELLERYRLKVSQLPRIQIADPIARYMGLRQGQVVKIVRPSETAGRYVTYRICV 211
BLAST of mRNA_A-nodosum_M_contig103.47.1 vs. uniprot
Match: A0A067CT03_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CT03_SAPPC) HSP 1 Score: 243 bits (621), Expect = 5.650e-76 Identity = 120/205 (58.54%), Postives = 160/205 (78.05%), Query Frame = 1
Query: 166 LSDEGHKLYRIRQTCMKMLEKRGYNVLKEHISMTSEKFCEAFGPDPSRESMTLLVEKVDDPVDQIFVFFPEDEKVGVKPIRSYSDKMLAEDVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVPQHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVARFYGMQRGQVCKITRPSETAGRYVTYRLCI 780
L+ E +LYR+R+T +KML RGY V + + T++ F FG +P+RE MT+LVEKVDDP D +FVF+P+D KVGVKPIR+Y ++M E+V KAI++V+ GITPFA+ A+ E+ + +++ FK++EL++DITEHTLVP H VLT E+K LLKRYKLKD+QLPR+Q +DP+AR+YGM RGQV KI RPSETAGRYVTYR +
Sbjct: 6 LNPEASRLYRVRKTVVKMLANRGYIVSDDELKRTTDGFAAQFGENPTREMMTILVEKVDDPSDNLFVFYPDDAKVGVKPIRTYCNRMKDENVTKAILIVQDGITPFAKQALNEMAPR--YKIDHFKETELLVDITEHTLVPVHKVLTREEKIALLKRYKLKDSQLPRMQVSDPIARYYGMTRGQVVKIIRPSETAGRYVTYRAVM 208
BLAST of mRNA_A-nodosum_M_contig103.47.1 vs. uniprot
Match: B7FSY0_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FSY0_PHATC) HSP 1 Score: 242 bits (617), Expect = 4.370e-75 Identity = 122/210 (58.10%), Postives = 160/210 (76.19%), Query Frame = 1
Query: 151 SIQKRLSDEGHKLYRIRQTCMKMLEKRGYNVLKEHISMTSEKFCEAFGPDPSRESMTLLVEKVDDPVDQIFVFFPEDEKVGVKPIRSYSDKMLAEDVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVPQHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVARFYGMQRGQVCKITRPSETAGRYVTYRLCI 780
+IQ L+ E +L+R+ +T ML+KRGY V K +T F E FG PSRE++T+LVEK DD +Q+F+FFPEDEKVGVKPI+ Y+D+M AE V AII+++ ITPFA+ A+ E+ ++E FK+SEL++DIT+H LVP H VLT +K +LLKRY+LKD+QLPRIQ+ DPVAR+YGM+RGQV KI RPSETAGRYVTYR+C+
Sbjct: 21 TIQGGLTPEAARLFRVYRTIANMLDKRGYMVPKTLREITPSAFKERFGEYPSRENLTILVEKADDDTNQLFIFFPEDEKVGVKPIKVYTDRMRAESVSNAIIILRVDITPFAKQAVQEM--SDSFRIEHFKESELLVDITKHQLVPVHQVLTPNEKNELLKRYRLKDSQLPRIQSNDPVARYYGMRRGQVVKIIRPSETAGRYVTYRICM 228
BLAST of mRNA_A-nodosum_M_contig103.47.1 vs. uniprot
Match: A0A5D6XUM4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUM4_9STRA) HSP 1 Score: 248 bits (632), Expect = 5.070e-75 Identity = 123/205 (60.00%), Postives = 162/205 (79.02%), Query Frame = 1
Query: 166 LSDEGHKLYRIRQTCMKMLEKRGYNVLKEHISMTSEKFCEAFGPDPSRESMTLLVEKVDDPVDQIFVFFPEDEKVGVKPIRSYSDKMLAEDVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVPQHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVARFYGMQRGQVCKITRPSETAGRYVTYRLCI 780
L+ E +L+R+R+T +KML RGY V + + MT E F + FG +P+RE MT+LVEK+DDP D +FVFFPED KVGVKPIR+Y ++M E+V KAI+VV+ GITPFAR A+ E+ + ++E FK++EL++DITEHTLVP H VL+ ++KA LLKRY++KD+QLPR+Q TDP+AR+YG+ RGQV KI RPSETAGRYVTYR I
Sbjct: 4 LTPEASRLFRVRKTTVKMLHNRGYIVSENELVMTPESFQQQFGDNPTREMMTILVEKIDDPSDNLFVFFPEDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLSRDEKAALLKRYRIKDSQLPRMQVTDPIARYYGITRGQVVKIIRPSETAGRYVTYRAVI 206
BLAST of mRNA_A-nodosum_M_contig103.47.1 vs. uniprot
Match: A0A2P4Y6Z7_9STRA (DNA-directed RNA polymerase I, II, and III subunit RPABC1 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y6Z7_9STRA) HSP 1 Score: 243 bits (621), Expect = 5.340e-75 Identity = 123/205 (60.00%), Postives = 159/205 (77.56%), Query Frame = 1
Query: 166 LSDEGHKLYRIRQTCMKMLEKRGYNVLKEHISMTSEKFCEAFGPDPSRESMTLLVEKVDDPVDQIFVFFPEDEKVGVKPIRSYSDKMLAEDVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVPQHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVARFYGMQRGQVCKITRPSETAGRYVTYRLCI 780
L+ E +LYR+R+T +KML R Y V + + MT E F FG +P+RE MT+LVEK+DDP D +FVFFPED KVGVKPIR+Y ++M E+V KAI+VV+ GITPFAR A+ E+ + ++E FK++EL++DITEHTLVP H VL ++KA LLKRY+++D+QLPR+Q TDP+AR+YGM RGQV KI RPSETAGRYVTYR I
Sbjct: 75 LTPEASRLYRVRKTTVKMLHNRDYIVSENELVMTPEAFQTQFGDNPTREMMTILVEKMDDPSDNLFVFFPEDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLGRDEKAALLKRYRIRDSQLPRMQVTDPIARYYGMTRGQVVKIIRPSETAGRYVTYRAVI 277
BLAST of mRNA_A-nodosum_M_contig103.47.1 vs. uniprot
Match: A0A1Z5K1Q5_FISSO (DNA-directed RNA polymerases I, II, and III subunit RPABC1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K1Q5_FISSO) HSP 1 Score: 241 bits (615), Expect = 7.920e-75 Identity = 125/218 (57.34%), Postives = 166/218 (76.15%), Query Frame = 1
Query: 130 SDRMEGSSIQKRLSDEGHKLYRIRQTCMKMLEKRGYNVLKEHISMTSEKFCEAFGPDP-SRESMTLLVEKVDDPVDQIFVFFPEDEKVGVKPIRSYSDKMLAEDVKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVPQHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVARFYGMQRGQVCKITRPSETAGRYVTYRLCI 780
++ + +I+ LS +L+R+ +T +LE+RGY V +E +T +F + FG D +RE++TLLVEK DD DQ+FVFFPEDEKVGVKPI+ Y+D+M AE V AI+V+K ITPFA+ A+ E+ ++E FK+SEL++DIT+H LVPQH VLTA +KA+LLKRY+LKDTQLPRIQ DP+AR+YGM+RGQV KI RPSETAGRYVTYR+C+
Sbjct: 10 AEALVAPAIRGGLSPSAARLFRVYRTMANLLEQRGYMVPRELREITPAQFQQKFGNDSINRETLTLLVEKADDEHDQLFVFFPEDEKVGVKPIKVYTDRMRAEGVSNAIMVLKVDITPFAKQAVQEM--SDSFRMEHFKESELLVDITQHQLVPQHQVLTAAEKAELLKRYRLKDTQLPRIQPNDPIARYYGMKRGQVVKIIRPSETAGRYVTYRVCM 225
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Seed ortholog | 2880.D7G1Y9 |
| Preferred name | RPB5 |
| PFAMs | RNA_pol_Rpb5_C,RNA_pol_Rpb5_N |
| Model size | 1203 |
| Max annot lvl | 2759|Eukaryota |
| KEGG rclass | RC02795 |
| KEGG ko | ko:K03013 |
| KEGG Reaction | R00435,R00441,R00442,R00443 |
| KEGG Pathway | ko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169 |
| KEGG Module | M00180,M00181,M00182 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000428,GO:0001054,GO:0003674,GO:0003700,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005666,GO:0005730,GO:0005736,GO:0006139,GO:0006351,GO:0006353,GO:0006355,GO:0006360,GO:0006366,GO:0006383,GO:0006386,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009719,GO:0009725,GO:0009733,GO:0009889,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042221,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2001141 |
| Exons | 6 |
| Evalue | 4.2e-127 |
| EggNOG OGs | COG2012@1|root,KOG3218@2759|Eukaryota |
| Ec32 ortholog description | RNA polymerase, subunit H/Rpb5 C-terminal |
| Ec32 ortholog | Ec-07_003640.1 |
| Description | DNA-directed 5'-3' RNA polymerase activity |
| Cds size | 645 |
| COG category | K |
| BRITE | br01611,ko00000,ko00001,ko00002,ko03021,ko03400 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680866395.6069224-UTR-A-nodosum_M_contig103:430835..430973 | 1680866395.6069224-UTR-A-nodosum_M_contig103:430835..430973 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig103 430836..430973 + |
| 1680866395.688481-UTR-A-nodosum_M_contig103:439643..440063 | 1680866395.688481-UTR-A-nodosum_M_contig103:439643..440063 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig103 439644..440063 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680866395.6183884-CDS-A-nodosum_M_contig103:430973..431171 | 1680866395.6183884-CDS-A-nodosum_M_contig103:430973..431171 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig103 430974..431171 + |
| 1680866395.63184-CDS-A-nodosum_M_contig103:436347..436398 | 1680866395.63184-CDS-A-nodosum_M_contig103:436347..436398 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig103 436348..436398 + |
| 1680866395.6417558-CDS-A-nodosum_M_contig103:437324..437459 | 1680866395.6417558-CDS-A-nodosum_M_contig103:437324..437459 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig103 437325..437459 + |
| 1680866395.6507542-CDS-A-nodosum_M_contig103:437966..438041 | 1680866395.6507542-CDS-A-nodosum_M_contig103:437966..438041 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig103 437967..438041 + |
| 1680866395.6620708-CDS-A-nodosum_M_contig103:439007..439118 | 1680866395.6620708-CDS-A-nodosum_M_contig103:439007..439118 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig103 439008..439118 + |
| 1680866395.6762333-CDS-A-nodosum_M_contig103:439568..439643 | 1680866395.6762333-CDS-A-nodosum_M_contig103:439568..439643 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig103 439569..439643 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig103.47.1 >prot_A-nodosum_M_contig103.47.1 ID=prot_A-nodosum_M_contig103.47.1|Name=mRNA_A-nodosum_M_contig103.47.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=215bp
MEGSSIQKRLSDEGHKLYRIRQTCMKMLEKRGYNVLKEHISMTSEKFCEA FGPDPSRESMTLLVEKVDDPVDQIFVFFPEDEKVGVKPIRSYSDKMLAED VKKAIIVVKGGITPFARSAIMELCAQREVQVEDFKDSELMLDITEHTLVP QHTVLTAEQKADLLKRYKLKDTQLPRIQTTDPVARFYGMQRGQVCKITRP SETAGRYVTYRLCI* back to topmRNA from alignment at A-nodosum_M_contig103:430836..440063+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_A-nodosum_M_contig103.47.1 ID=mRNA_A-nodosum_M_contig103.47.1|Name=mRNA_A-nodosum_M_contig103.47.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=9228bp|location=Sequence derived from alignment at A-nodosum_M_contig103:430836..440063+ (Ascophyllum nodosum dioecious) CAGACTGTTTTGAGGTCTTCGTGGGAGGGCTTGGTCCGCCGAATACTCGA
GGCAGTGCTGTGGCTGCTGTCGTTTTAGTTGCTGTTTTAGTCAAGTTTTA
TTAAGTAGGACAATCATATTTGAAGTTTAAGCGATAGAATGGAGGGATCT
TCTATACAGAAACGCCTCTCGGACGAGGGCCACAAGCTTTACAGGATCCG
GCAGACGTGCATGAAGATGCTGGAGAAGAGGGGCTACAACGTGCTGAAAG
AGCACATCTCGATGACCTCGGAGAAGTTCTGTGAAGCCTTCGGCCCGGAT
CCCTCTCGGGAGAGCATGACGTTGTTGGTTGAGAAGGTGAGGTTCACAAA
TAGCGTACTTCTAGAGCACAAAAATAATATAAGTACCTACTCTAGACTTC
TGCGAACGGTGGGAAATTCCAGTTGCCAAAGAGAGGAAAATCAATATAAA
CTGTTATATAGATCACTTCTTAAAACATTTCAAACGGAGATGATACGCTT
GAAAAAAATTAACAGATGGCCAGAAAAGGCAGAAATGTATTATCTGGAGG
TTGAGCGGAGTAAAATATAATATAATCTGTGTTCGTCTTCATTTTCTGAA
CATTCCAGAAAATGGAGAAATAATGACATAACGCATCTCTGCTGTGGGAG
ACCCTGTCAAATCCCGCAGAAGTCGAGTGTGCGGCATCTCTCCAGAACAA
CGCTGCTAGAAATAAATGCGACAGACAGCCCGACAACAAAGAGCATGCCG
GCACAAGAGCCTCGCTGTTGGTGCGATGCAACTAGCGTTTGGTGACCTCT
GTGGCGGCAGCGGTCGCTGTCGAAGAGCCCCCTCTTGAAGTGACAAGGGC
TGTGATCATGCGACGACCACAGCTGAACCGGAGCGAGCGTGGGAACCGAA
CCTCCCGCCGGAAGTAGTTCCCGATGACGTTGCAGGCATTCATCAAGTTG
ATGCAAGTTTCTTAGCTTTGTAGTCTGATCCATGCTTTTCTTGCGTAAGT
CGGGGCCGCCCCTTTTCGTAAAAGGGGCCAGGCGCGCTTTGTCGTCTGGG
ATCATGGCCAGGTAACCCAACCTTGAGAGTTGCTGGGCACGCCGTTAGAT
TTTTCCCTGCACGTCAACAATTCACATGGAGCTCTCCAACCTGAAAAGGT
CCATAGGGACTAGTTTTGATTTTGCTGACAGTTTAGTCGCCTCCATTTGT
CAATTTTGTTGAAATCTATACTCTACTTTTGGAACCGACCCTTTTGGAAC
CCAAAAATACGGATTTTTGTTTTATATTTTGGGAGTGGGAGTCATTCAAA
CGTTCCTATAATAACATCTGATTTTTCTGTAAACATAAATTCTTGAATGT
AGTGTCTGGATTTTTGGAAGCGCGGATTTTGGTGGAGCGGGCTCGCAGAA
TTCACCTATTTCTAGAAGCCGACTACACACGAAATTGCCCTCACAGATTT
GCCAACGCCAGTTCAAGTGACTTTAAAACAGCACGATCCAATGTCTTTGA
TGTGTTACCATAAGAAGTGAGGGGCCTTATTAGACCAAGTCTTGGCTAGC
ACATAAAAGTCAAAATTAAATCCTCAGATCTTTTTTTTAGGACACAATTT
CCGGGATAACACCTTAGAAATATGCTACAAGAAAAGGACTATTTCCGAGG
ACCTGGTTTTCGTGGCGCGACAATCAAAGAGCGAGTCCGCAAGAATCGGC
GGGATTCTGGTGCACTTTTCGAGCGAGCGCCATCTCCTCGAAAACCGAAA
ACGAGGATGGTGTTCATAGTGGCATGGGAGGCCTTCGCCCGGTGCAGCTT
TCATGACAGTCAAGACTGCGCCGCCGCGCGAGGGCATTGGCGGAATGGGC
TTCGATGCTCGAGATACTTGACGAGAAGGACAGCGGTGGCAAGCCCTCGA
AGCGCAGTTGGAGTGTCCTTGAGCCGATTTCTTCCCCCCATCAGTCGCCG
TGCGCGCTGCTGAGGCAGTAGCCAACAGACAATAGCCAATACCCGCTGCT
GAGGAAATCAATCGTTAGTCCTCAATGTTCAACAGTAGCACGATCAAGCT
CGTCGTCTAGAAAATCTGCCACATCTTACAGCGCCAGGTTTGAGAGAAAG
TTGGAGGTCTCTCAAATCTGGGCCCAAGATCTTATAGCGGTCTGCGGCCG
GGAAAGGAAAAAAAAATGACAAAGCTGTGTCGCTGGAATCTGACCATATT
TCATTCCATACATTTTTCCCCCCGAGGGTTGTTGCTCAGAAGGTTTAGAT
GCATTCAGAATTTCTTTAAAATCAGTACAAGTAAGTCAGTGTTCGGAAAA
ATGGCCACCGTAATCCGGCTCAAGATTTGAGAAAATGCCCAGATTTTGCG
GTAGACCCCTAGTTATTGATGTGTGTCAGGTGAAGCTTTTAACATGCCCC
CTTCATACCATTAGTGGGTGTGGGAAAAAGAGGCGCACATTAATTGGTCC
ATGGTGACCTGCAAAGGCAGCACCCGTTACTGGAACTACCTTGAGGACTA
CTGGCCCTGTGCCGGCGGACTCTCGGCAGTTTATATGTATATATGATCAT
CACATATAGCAAGAGTAAGGATCAACCGGGTAAGATTGCCAATCCTGCTC
GTGGTCAGCTGAACAGGGAAAATGAATATATTTCCCTGTTGGAAAATGAA
TATATTTCCCTGTTCCCGTTCGCGCCTGAAAATTTGGTCTCGCAAGACGG
ATTCGGCAGTCCCTTTCCGCGTCAGTCTGCTCATCTCCATACTCAGGCTG
AACGCCATCGATACGCATTTGCGTGACCTGATACTCGGGACTGACCCGAT
GGCGGTTCGCGGTTGGTGGTATACATAAATGGACTATGACGCCGCCGGGG
AAAGCGAGAGAAATCCCTTGAGTAAGCACCAGATTCAGCCGGAGTGTGGA
GAATGAGAAGGCTGATGCGGGACGAGACAGCCGAACCCGTCTCGCGAGAT
CAAATTCTCAGGCGCGGACGAGGACAGGGAAATTTTAACTTTTCCTGTTC
AGGTGATCACGAGCATGATCGGCAACCTTACCCGTTTGATCTATACTCTG
ATATGTGTGATAACCATGCTGTATACATAATCAATCCGTATACGGGAAGT
CGGGAGAAACTTTGAGCGCGAATGCCCTGTAATTGTTCGCTGAGCTATTA
TGCCCTGTAGGGACCGCTGAAAGACCACTACAGTAGTACTCATTATTAAT
GACATATTGAATGTTAAGGAAAAGGAGAGTAATGTAGAGGTGTCGGTTGT
GGAGAACAAGCGCACCCACAGCACATATTTTTTACGATGCTGCAGTATGC
TATTTCAAGAGGATGATATACTGCTTTACAGTACCAGATGTTCGCGGTTC
CGCCGCATTATACCCCAGAGCCTTGGCGAGAAGAGCTGATTCTGAAATCT
CGTGCGCGCAAGGCATATCTCAATTAACCCGGTGCTACTGGCTTACCGCA
AGCCTCCCGCGACTCTCGCGGGAGGCTGATTTCGTTCGTGGCAGCGCGGC
GATGCCGACGAGCTTCTCTGAGCGGCACCTGTACTTTCTCGGTGCCCTTT
GTCTCTGCATGGACGTTTTGAAGTAAAGCCAACTGCTCTGTAGGAGGGCC
TCCGTGCGGGGGCGGGCATGTGGCGTAACCTCGAGCGTGGTGGCAGTGGC
CACGCCTTGATGTTTTTTGTTGATTGTTGATTCACACAGTTAGCGTATTG
TCCGTGCAAGTGGAGAAACTATGGTGATGCAACGAGTCAGCCATAGACCT
ATCAAACGCTAATCTCGCTCGTGGTCACAAAGAGGTACGAAGGTGAACAG
ATCACATCATGGTGACCACCCGCTACTCAAACCAACAAGGATCCAAATCG
CGACAATACCCTTGTCAGGCCCAACCAACCGAGAACATCGGAAACTTATC
GGCGTCAAGACGATGTCTTTGGGTGCGAACTACAGTTTATACTGTCTGGA
GTGCTGCCATTATTTCAGAATCTGAATTACAAGCTACAGAGAAAGACTGT
CTGGAGTGCTGCACATCCAACAAAGTGATGCCATCGAAAGTGATACCAAA
AAGTTTCTAGCCCTTACTATCGGAGGGTTACACGAAGACAAGTCATGCGA
CACCTGACAAGGAATGGCGCCGACCAATGTCAAAGCCGATCGTCAAATCT
CCTTACTCCATATCGAGAGCAACCCCGATCGACTCGGATTAATCATTGTT
GTCGCCTACGCACGGCCAGCGTTCTCAGCAACAGTTTTGATCAACAAACC
CAAGTTTCTCAAGGCCTCACGTCATGCAGAAATAAGGAAACTCGTAGTAC
CGAGGTCCAAGGCGATTGAAGCCTTTGAGCTGGTGAAGCCGGCGCGCGAG
TCAGCATCCAGTCATCCAAAGCCCTGTGCACCCCTGAAACCCCCCCCAGA
AAATCTTGCCCGTTTGCCGCTCCTTGTTAGCCCTCTGAAGAAGAAAACAG
ACCATGGTCAGAGATCAGCTTTCCCCTCAGAAACCTCCCGGTTCGCGTCT
TTGATTCTCGCGCACAAGGGTTCAGTACTCCCCTGGCTCGTCGACCATCG
AGCTGCCCTTCGTCCTCGCCGAATCTGGAGCTTACTCACCCGATAGAGCG
TGCTGCGGCGCCCTACCAGGCTTTTCGCGACAAGTGCCCCCTGCCTCTCG
CGTGCCACATTCTCCCCCAACCAAACCACCGCCGCGTCTCAACCGACCGG
TTGAAAAGCTTAGGCAACCGGGTGGTTGCATCTATTGAGCGTGAGTCCAG
CCCTAAACCCGCCGGAAAGATCCTCCCACCCCAAAACCAGGTTTCGGAGG
GAGAGGGCACAGTATGAGGGTGTGCGCTTTCCCGGAACCTATTTACACCA
GCTACCAGCATACTGGTATCGACGTTTTGGACTGGAAATTCCATGCAGGC
GTTTGAATTACTCACGTCTAATATCAGGCCAAGATATTCGAGATGCGTCG
ATCGTGAATGCGAACATATCGAAGCCTATCGGGTTGAACCCAAATGCTAC
ACAAGCACCAATATACTTCATCGCGCATGACTACTGTTAGAGCTTTGTAG
TACGGCGCTTTTTTATCCCCCCCTCCATACACACACACACACCTCCCCCC
TTGGGAGGATCAATGCGAGTGGCATAGAATGACTAGGATGACAGGGCCGG
ATTGCGCGGTTATGTGCAATTAAATAAAAAAAAACACACACACACACACA
CAACACAATGTGAGATGACCCCATTATGAATGTAGGGTGGGGCCAGAGTG
GGTAATCGCGCGACGAAGACACCGTCGTGGATCTCGTGAAACCAACCTCG
GAAAACAGCCGCGGACCCAAGGGCTTGTCATTCCGTGTGTTTCGCTCCAC
ATTCGGGGACAGAGTACAAGTGTACCATCATATGTAAGCAGATGGGCGAT
GCTGGTTTTCAAGTACACCGTCTACCCCCTGCTCGTCCATCCACACCACA
CTAATTTACAATACCGTAACGCGCGCTGATTTGCGATACCCCCGCCCTTG
TACCCTCCGCAGGTAGATGATCCCGTGGACCAGATTTTCGTGTTTTTCCC
AGAAGACGAGAAGGTGTGAGCGTGTCCTATACATCATATATATATATATA
TATATACGTGTGAGCGTCTCCAATACACCATATATATATATATATGTGAG
CGTGTCCTATACACCGTATGTCTACATATATATATAGAGAGAGAGACTGC
GGTACAAGTAGGTTGTGTGTGCTTTGAAAGTTTTTTCTTGCTTGTTGCGC
GGAACAGTCAGAGTGCTCCCCTCCCCCCCCCCCCAAAGAATATCCCAACT
CAAACATTATTTATAGAACTCCTTGCTATTTTTTATGCTCAAACCTCGTC
TTTGGTCGAGAAACCCTAATATAGTGGGGCGAGACGAACAAATGTCTACA
GAGCTAAGAGGACGAGTCAGGACAGGCGTACATAATCTTACTGGTATGGA
TATGATACTGTAGTCAAACTAAAACATTGATTTCAGTCGTACTTCACACC
CACCATAATCTAGTACAGCAGGATATGGATCAACCGGGTAAGGTTGCCAA
TCCTGCTCGTGGTCAGCTAAACAGGGAAAATTAGTATTTCCCTGCCCCCG
TTCGCGCCTGAGAATTTGGTCTCGCAAGGAGGATGCTCCTACAGTACCGT
ATGCGATACTCGTACTGTAGACACCATGCTCAGGTACATGTAGTAGTACC
ATGATGGTCCCCCCTAGAAGTGAAATGAGATCGCCTCCGCAATGATGAAA
ACCCGCTGCTGCCCAGCCCGACCGTCCTCTCTACCTATCTGTTCTGTCCA
CTGACACCTGTCCAACCAACGGAACGCCGCTGGGTCTTGTGATCTGTACC
GTGATCTGTACCGTGACCTGTACTAACACTTCGTATCTGTTCTGTCCACT
GACACCTGCCCAACCAACGGAACGCCGCTGGGTCTTGTGATCTTTACCGT
GACCTGTACTGTGATCTGTACTAATACTGGATGTGGCAGGTTGGGGTGAA
GCCTATCCGCAGCTACTCGGACAAGATGCTGGCGGAAGATGTGAAGAAGG
CGATCATCGTTGTCAAGGGGGGCATCACGCCCTTCGCCCGCTCGGCGATC
ATGGAGCTCTGCGCTCAGCGAGAGGTTAGGCCTCTCGTTCCTCGTGCAGC
ACTTTTCATTTGTACAGTGCTCTTGATTTGTGCAGGAACTTGATAAAATT
ATTTTATACAGATGCTTTTGCTACGACAGAGATTGTTTTTGTACTTGTGG
GGGTTTTCTTATATGGTATCCTTGGTTTGTACTCTTGATTTTTCTATCCT
TCGTGGGGGTCATTAACAATGAACGCTATAATCAGTATGTTTGTTGATGC
GTACTGTACTGTAGCTCTTATTTATGTGCTTCTCCGGTAAAACAACGATC
GAGGTAAAAAAAAACGTTTTAAAAAGGTCTATTTTGCCGTAGGTGAACGT
ATCCGACTCTTTTATACTGATGCTCGCGTACCGTCCTACGACTACTTATA
CTAATACTTAGTTATTTCCAGTTTCCATGATCTATCCTTGTCCCGTGGCC
TTCTTGCTCGATGAAAATGTGTAAAAAATAATGAACAATGTGTGCTGTTT
TGTGTGTGTATATTGGGGGGGGGGTGGGCAGGTTCAGGTGGAGGATTTCA
AAGACTCGGAATTGATGCTGGATATCACGGAGCACACTCTCGTACCGCAG
CACACGGTGGGTACAATATATTAGACAGTACGATACGTAGTACAATACCA
GGTACCTACTAATAgACTAATAGTAGGTGTGAGAGGTGCGGCGGCTGTTG
ATCCTATCGCTGGTGGGTGATTGAGCTACGGTATGTTGATCCTGGTTTCA
GTTGGGTGATGTGACGATAGTTGAGGATCAGGTAAACGATAACTCCGTAT
TATTGTCGCAAAATTTTGTAAAAGACCATAGTTAGCAGGCATTAAAGAAA
ATATCTTTTTATCAAACTTAACTGTAATTTCTTTCGGTATTTCTAAAATA
ATAGAATGACTATACCCTAGATGAAAAATAAGTTTTCCTTTTTCTTTAGT
TTCTGGTGAGTATGTAATGACGTAGTGTGTGTGTGTGTGTTTTCTTCCCA
TCCATTCTGGACATCAATGGACGTACCAGCCGGGGTCACACAGGATTTTT
AATCCACCTTCCTTCTGCGGTGCGTGCCTTGATTTTTGTCGCGAGAAGGA
TTCAGCCATTCCTTTCCCTCGTCGACCGCGAAGTCGAATTTTGTGTACTA
ACGAATTAATCGTTCTCCACCCGTTGGGCATTTTTATTTTGGTTTTTTAG
TTTTCAGTGAGAAAAATCCCGTTTGCCGGGATCGAACTCACGTCCCAACG
TGTCAGAAGGTTACGAGGTGCCAACTGAGCTACCGGGGTCGACCGGCAGT
ACTGATAGTAATATGTTAATATATATAAATAGTACAATACCGCAAAATTT
GCGTATCTTGCGCCCGCTCGTGTGACATAGCTCACTCCACAGAAGGCGTG
TTCACGCGGGACTACTGTTTTGAGTACAAGGTGGCCCTCATTCCCGCGTC
GCGTGATCCCACGATATCCAGCACGCAGTCGTCAACGTGTCTGCCAATCT
AAGGCACTACAAACACTAAAGCGTTTGGTGCGTCCGACGGCTGGACCGGG
GTGGGTCCCTTGGGTACTGCAGGTGCTAACTGCCGAACAAAAGGCTGATC
TGCTGAAGAGGTACAAGCTCAAGGACACCCAGCTTCCGCGGATACAGACC
ACGGACCCGGTGGCGCGATTTTACGGCATGCAGGTGCGTAGGGCCTCCAG
GGAATCTCTCTCACTTTTTACCCTGCGTAGCCCTTCAGATAGCATTTCGT
TGGGAGTTTGTATATTTCGAAGGCGGGGGGGGGGGGGGCGTTCTCGGTTT
TTGTTGACGGCGAATGAATCCGGACGGCCCAATGGTCGTGCAGTGTAAGG
GCAATCCTTCCCTCCACAGACCCCAGGGTTTCGATTTTTCTTAAGATATT
TTATTATTATTCTCAAGGGCATGCTTAGAAAGTAATCCCCGGCATGTTTG
GTACCAAGGCCTCCGATGCTATAGTACACGTTTGAAAAGTGTTAAGCCGT
TTACGCTCCAGTACTAGAGCTAACGGTGTGATGAAACACTCCCTCACGGT
TCACCTCGGCCAACACCTCGTGCATCGTCCCCGTCTCGATCCGTCGTATG
CTGGCGTCAACGGTGTGATAACTCCATCCGCAGCGGGGACAGGTTTGTAA
AATCACAAGACCCAGCGAAACGGCGGGGCGGTACGTAACCTACCGCCTGT
GTATCTAAGGCCATGGAAGGCGCTACTCCCCGGATGCCGAACCTTGCATC
GAGGCCCCATGTCCTTAATATGTAACTGTTTTTCAGAAGCGGAGGATGAA
AAATAAAGAGCACACGCTCGGAGAAATGTCTCCTTTGCCTTGAACCCTCG
GATTGCTTTTGTCTGCAATTGGGTTCGTGGTACGGCTCGTTGTAAGATAA
TAAGATAATTCGTAGTACTTATAATTGGGAGTTGTTGTTTTTTGCTCTTG
TTTTTTCTTTTGTCAAGTCTTTCTCGCTTTGTCTCCACCTCTACCTCAAT
TTTGTGTGCTGTTCCTGTAGGGTCTTGTATGTTTTATATGGTACTTCGTG
GGAGGATATTTGTTTGTCTTTATTTTCTTACGGGAAAATATTGTGGTCGA
ACTCGATGAAACTTTGTGGTCGAACTCG back to topCoding sequence (CDS) from alignment at A-nodosum_M_contig103:430836..440063+ >mRNA_A-nodosum_M_contig103.47.1 ID=mRNA_A-nodosum_M_contig103.47.1|Name=mRNA_A-nodosum_M_contig103.47.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=645bp|location=Sequence derived from alignment at A-nodosum_M_contig103:430836..440063+ (Ascophyllum nodosum dioecious) ATGGAGGGATCTTCTATACAGAAACGCCTCTCGGACGAGGGCCACAAGCT TTACAGGATCCGGCAGACGTGCATGAAGATGCTGGAGAAGAGGGGCTACA ACGTGCTGAAAGAGCACATCTCGATGACCTCGGAGAAGTTCTGTGAAGCC TTCGGCCCGGATCCCTCTCGGGAGAGCATGACGTTGTTGGTTGAGAAGGT AGATGATCCCGTGGACCAGATTTTCGTGTTTTTCCCAGAAGACGAGAAGG TTGGGGTGAAGCCTATCCGCAGCTACTCGGACAAGATGCTGGCGGAAGAT GTGAAGAAGGCGATCATCGTTGTCAAGGGGGGCATCACGCCCTTCGCCCG CTCGGCGATCATGGAGCTCTGCGCTCAGCGAGAGGTTCAGGTGGAGGATT TCAAAGACTCGGAATTGATGCTGGATATCACGGAGCACACTCTCGTACCG CAGCACACGGTGCTAACTGCCGAACAAAAGGCTGATCTGCTGAAGAGGTA CAAGCTCAAGGACACCCAGCTTCCGCGGATACAGACCACGGACCCGGTGG CGCGATTTTACGGCATGCAGCGGGGACAGGTTTGTAAAATCACAAGACCC AGCGAAACGGCGGGGCGGTACGTAACCTACCGCCTGTGTATCTAA back to top
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