prot_A-nodosum_M_contig103.23.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_A-nodosum_M_contig103.23.1
Unique Name	prot_A-nodosum_M_contig103.23.1
Type	polypeptide
Organism	Ascophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length	1016

Homology

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BLAST of mRNA_A-nodosum_M_contig103.23.1 vs. uniprot
Match: A0A6H5L4K7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4K7_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.610e-16
Identity = 109/347 (31.41%), Postives = 149/347 (42.94%), Query Frame = 0

Query:  710 GSTCDNRVKVMARAPALEIKRRTESRRSLWKIDHPRVIPTLDDRGLRDQRSREGSLRNGGGDEEDI-GVDFGDFGVDRRVREGVDRIKGGQR----GKQLDGWGTRIDTGPVTGGWDYLDGVCTLSESCTGTISSIERQEGVSGAGSC---------------------------TLSSCSEETGPWGDADGAG-----------SANESRADSRAESTVSASDAMDEVEADWPTNLRNSVGIVTDLVVPCQTEVAAARDRTEAGRKDSVPRHAGGFGVRDSDSDEVMEDVD--EEEREMLAAMEEFYERGRQQLKEHAKRHSREPKQRSSDSWPASRTPAQQNAHR 1011
            G+T DNR++V+  AP+LE KRR E R ++ +       P+ D  G                D E + GVD G F   +R +   +     Q     G  +DGWG R DTGPV GGW    G C +    +                                             + +S S   G WG A G             S +     S A ST    +   E EA W   L++SVG+VTDLV+PCQ    A  D               G G+     +EV E+ +  E+EREM AA+E  YE+GR+QL+ HA+ H +E +QR++D+W ASRTP QQN +R
Sbjct:  327 GATPDNRLEVLKLAPSLEKKRRMEGRFAVPQQHQEAPPPSPDLAGSCXXXXXXXXXXXXKEDVEAVTGVDLGCFRAQKRQQRQDEETNRKQEVVAAGAGVDGWGPRQDTGPVEGGW----GDCCIPAVASAVDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEATESSTSLSGGAGDWGIASGRXXXXXXXXVCGVSESGXXXXSMAVSTDEQGEEGQE-EARWAEELKSSVGVVTDLVLPCQGRDGAGVD---------------GVGIA---IEEVGEEGEGHEDEREMAAALEAIYEKGREQLERHAEVHGKEARQRATDAWLASRTPQQQNDYR 650

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BLAST of mRNA_A-nodosum_M_contig103.23.1 vs. uniprot
Match: D7FXG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXG8_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 4.430e-13
Identity = 52/116 (44.83%), Postives = 70/116 (60.34%), Query Frame = 0

Query:  896 EADWPTNLRNSVGIVTDLVVPCQTEVAAARDRTEAGRKDSVPRHAGGFGVRDSDSDEVMEDVDEEEREMLAAMEEFYERGRQQLKEHAKRHSREPKQRSSDSWPASRTPAQQNAHR 1011
            EA W   L++SVG+VTDLV+PCQ    A  D               G G+   +  E  E   E+EREM AA+E  YE+GR+QLK HA+ H +E +QR++D+W ASRTP QQ+ +R
Sbjct:  212 EARWAEELKSSVGVVTDLVLPCQGRDGAGVD---------------GVGIAIEEGGEE-EXXXEDEREMAAALEAIYEKGREQLKRHAEVHGKEARQRATDAWLASRTPQQQSDYR 311

The following BLAST results are available for this feature:

BLAST of mRNA_A-nodosum_M_contig103.23.1 vs. uniprot

BLAST of mRNA_A-nodosum_M_contig103.23.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5L4K7_9PHAE	1.610e-16	31.41	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FXG8_ECTSI	4.430e-13	44.83	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 950..970
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 376..394
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 967..995
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 660..680
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 262..292
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 863..899
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 312..327
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 364..497
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 996..1015
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 925..950
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..331
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 589..623
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 586..623
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 925..1015
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 395..425
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 951..966
None	No IPR available	PANTHER	PTHR12460:SF0	POL II C-TERMINAL INTERACTION DOMAIN SUPPRESSOR	coord: 373..1007
None	No IPR available	PANTHER	PTHR12460	CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN	coord: 373..1007

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A-nodosum_M_contig103	contig	A-nodosum_M_contig103:290040..293357 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ascophyllum nodosum dioecious OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_A-nodosum_M_contig103.23.1	mRNA_A-nodosum_M_contig103.23.1	Ascophyllum nodosum dioecious	mRNA	A-nodosum_M_contig103 288908..293780 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_A-nodosum_M_contig103.23.1 ID=prot_A-nodosum_M_contig103.23.1|Name=mRNA_A-nodosum_M_contig103.23.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=1016bp
MGRGALRRSESSKSERKSTCRNRDLGRPSPPPFAPVWLLPAAVRERPPVQ
AAAWRSACVPSTSAKIAVVVRAGLLAVLQPPSTAVRVPSTLSSKRLCRGR
VQEQGRSGTNVSARRDGCLERRKWLAPAVAPSRKVKPPVPVVTNTGPPAV
ISPTAASGANPVTIAPPNCRDIPAPTAVPRRVSRSFSCDGWVEPTRGLAP
AVSEAVSDDSRHRAPGDNPAKHVKSPAAAAAAIFPKGTSPTGRKPLSPPT
SRSRPHGEDWNRSKTSTPPPGSVRSPSKQRQQQQQHQPPQQLQPHVHGRH
RYPPWDGNMHPVSPPRQQQQQIRQRHSTAPYEAMYWGQGPPPPPPAGAHV
ATHRPMHMILTHLEHQMLLQHQQRQREYQHQLHQRDHQLHHREQAQQHQQ
QQQQQQQQAREFPQSRDQALQRGSLQPREHQHHQHHQLHRDLRQGRQRPE
NLRDAMPGSGRRRLSPTPSEASRRPLSPPASAMVRSGPPPTHEWPHRHVM
KGGGMQHRSAPRPFFYPFGSAVTAAAPVAPGGIPSVQVLGHAGYPHPDSA
GHPIRVPILSIITPPPLYPPYAVVTHVPVQRRTANTGGVGGGGRTTNGTP
NGGGMPMTVASGSSNGHGSVTGSGCPNDAAVSAVAGVGGSVANGAMHAAN
GGGGVPVAGGGPVSGGGGGPVTGGGGGSRTARMRVRVHAPNSHKLPPAPS
SMIVKAIAQGSTCDNRVKVMARAPALEIKRRTESRRSLWKIDHPRVIPTL
DDRGLRDQRSREGSLRNGGGDEEDIGVDFGDFGVDRRVREGVDRIKGGQR
GKQLDGWGTRIDTGPVTGGWDYLDGVCTLSESCTGTISSIERQEGVSGAG
SCTLSSCSEETGPWGDADGAGSANESRADSRAESTVSASDAMDEVEADWP
TNLRNSVGIVTDLVVPCQTEVAAARDRTEAGRKDSVPRHAGGFGVRDSDS
DEVMEDVDEEEREMLAAMEEFYERGRQQLKEHAKRHSREPKQRSSDSWPA
SRTPAQQNAHRRSQR*