prot_A-nodosum_M_contig103.12.2 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_A-nodosum_M_contig103.12.2
Unique Name	prot_A-nodosum_M_contig103.12.2
Type	polypeptide
Organism	Ascophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length	250

Homology

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BLAST of mRNA_A-nodosum_M_contig103.12.2 vs. uniprot
Match: D7FXG5_ECTSI (Arginine/serine-rich splicing factor 6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXG5_ECTSI)

HSP 1 Score: 278 bits (712), Expect = 1.340e-91
Identity = 137/167 (82.04%), Postives = 149/167 (89.22%), Query Frame = 0

Query:   23 YTRDKDLDRAFRRYGRIEKIDVRMGFAFIEFDDRRDAEEAVSDMDGREIDGARIVVQPGRGHRPNGPKFATRRTEHRITIEGLDSHTSWQDLKARPRQIFGTAHRDFGRQAGQVLFSDIFFRHGRRWGVVEYLTREDMKTAIRQLDDTRLGGKYIRVREERSGRDSR 189
            +TRD+DLDRAF RYGRIEKIDVRMGFAFIEF+DRRDAE+AV++MDGRE DGARIVVQPGRGHRPNGPKFATRRTEHRIT+EGLDSHTSWQDLK            DFGRQAGQVL+SD+FFR GRRWGVVEY++R+DMK AIR LDDTRLGGKYIRVREE SGRDSR
Sbjct:   13 HTRDRDLDRAFGRYGRIEKIDVRMGFAFIEFEDRRDAEDAVAEMDGREFDGARIVVQPGRGHRPNGPKFATRRTEHRITVEGLDSHTSWQDLK------------DFGRQAGQVLYSDVFFRQGRRWGVVEYVSRDDMKAAIRTLDDTRLGGKYIRVREENSGRDSR 167

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BLAST of mRNA_A-nodosum_M_contig103.12.2 vs. uniprot
Match: A0A7S0Q5F1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q5F1_9EUKA)

HSP 1 Score: 129 bits (325), Expect = 2.410e-34
Identity = 62/143 (43.36%), Postives = 97/143 (67.83%), Query Frame = 0

Query:   23 YTRDKDLDRAFRRYGRIEKIDVRMGFAFIEFDDRRDAEEAVSDMDGREIDGARIVVQPGRGHRPNGPKFATRRTEHRITIEGLDSHTSWQDLKARPRQIFGTAHRDFGRQAGQVLFSDIFFRHGRRWGVVEYLTREDMKTAIR 165
            YTR++DL+R F RYGR+E++D++ GFAF+EF D RDA++AV DM GR++DG RI V+  +G R  G +   + +  RI +EGLD  TSWQDLK            DFGR+ G ++++D++    +++G++EY  +ED + A++
Sbjct:   15 YTRERDLERVFDRYGRVERVDLKRGFAFVEFSDDRDADDAVYDMHGRDLDGRRITVEHAKGGR--GARGPAKGSGFRIKVEGLDMRTSWQDLK------------DFGRKVGDIMYTDVWVDGSKKFGIMEYGRKEDYEEALK 143

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BLAST of mRNA_A-nodosum_M_contig103.12.2 vs. uniprot
Match: T1D6F1_9DIPT (Putative b52 (Fragment) n=1 Tax=Psorophora albipes TaxID=869069 RepID=T1D6F1_9DIPT)

HSP 1 Score: 129 bits (324), Expect = 1.470e-32
Identity = 72/175 (41.14%), Postives = 109/175 (62.29%), Query Frame = 0

Query:   25 RDKDLDRAFRRYGRIEKIDVRMGFAFIEFDDRRDAEEAVSDMDGREIDGARIVVQPGRGH-RPNGPKFATRR------------TEHRITIEGLDSHTSWQDLKARPRQIFGTAHRDFGRQAGQVLFSDIFFRHGRRWGVVEYLTREDMKTAIRQLDDTRLGGKYIRVREERSGR 186
            R++DL+R F+ YGRI +I ++ G+ F+EF+D RDA++AV +M+G+++ G R+ ++P RG  R +G +    R            T+HR+ +E L S  SWQDLK            D+ RQAG+V ++D   R  +  GVVE+ T  +MK AI+QLDDT L G+ IR++E+R GR
Sbjct:   16 RERDLERFFKGYGRITEILIKKGYGFVEFEDYRDADDAVYEMNGKKLLGERVTIEPARGTARGSGSRRERERRGGRSRYGPPLRTKHRLIVENLSSRISWQDLK------------DYMRQAGEVTYADAH-RDRKNEGVVEFATSSEMKAAIKQLDDTELNGRRIRLQEDRGGR 177

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BLAST of mRNA_A-nodosum_M_contig103.12.2 vs. uniprot
Match: A0A182HC83_AEDAL (Uncharacterized protein n=4 Tax=Aedini TaxID=1056966 RepID=A0A182HC83_AEDAL)

HSP 1 Score: 129 bits (325), Expect = 5.090e-32
Identity = 72/175 (41.14%), Postives = 108/175 (61.71%), Query Frame = 0

Query:   25 RDKDLDRAFRRYGRIEKIDVRMGFAFIEFDDRRDAEEAVSDMDGREIDGARIVVQPGRG------------HRPNGPKFATR-RTEHRITIEGLDSHTSWQDLKARPRQIFGTAHRDFGRQAGQVLFSDIFFRHGRRWGVVEYLTREDMKTAIRQLDDTRLGGKYIRVREERSGR 186
            R++DL+R F+ YGRI +I ++ G+ F+EF+D RDA++AV +M+G+++ G R+ ++P RG             R    +F    RT+HR+ +E L S  SWQDLK            D+ RQAG+V ++D   R  +  GVVE+ T  +MK AI+QLDDT L G+ IR++E+R GR
Sbjct:   16 RERDLERFFKGYGRITEILIKKGYGFVEFEDYRDADDAVYEMNGKKLLGERVTIEPARGTARGSGSRRDRERRGGRSRFGPPLRTKHRLIVENLSSRISWQDLK------------DYMRQAGEVTYADAH-RDRKNEGVVEFATASEMKAAIKQLDDTELNGRRIRLQEDRGGR 177

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BLAST of mRNA_A-nodosum_M_contig103.12.2 vs. uniprot
Match: UPI00096B0064 (serine-arginine protein 55-like n=1 Tax=Aethina tumida TaxID=116153 RepID=UPI00096B0064)

HSP 1 Score: 126 bits (316), Expect = 2.170e-31
Identity = 74/184 (40.22%), Postives = 112/184 (60.87%), Query Frame = 0

Query:   25 RDKDLDRAFRRYGRIEKIDVRMGFAFIEFDDRRDAEEAVSDMDGREIDGARIVVQPGRGH-------RPNG---------PKFATR-------RTEHRITIEGLDSHTSWQDLKARPRQIFGTAHRDFGRQAGQVLFSDIFFRHGRRWGVVEYLTREDMKTAIRQLDDTRLGGKYIRVREERSG 185
            R++D+++ FR+YGRI+++ ++ GFAF+EFDD RDA++AV +++G+E+ G R+ V+  RG        R NG         P+  +R       RTE+R+ +E L S  SWQDLK            D+ RQAG+V ++D   +  R  GVVE+ +  DMK AI +LDDT L G++I +RE+R G
Sbjct:   15 RERDIEKFFRKYGRIKEVAMKNGFAFVEFDDYRDADDAVYELNGKELLGERVSVERARGTPRGSDQWRGNGGGGGRSYGPPRGRSRDKYGPPTRTEYRLIVENLSSRVSWQDLK------------DYMRQAGEVTYADAH-KQRRNEGVVEFASYSDMKNAIEKLDDTDLNGRHIHLREDRRG 185

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BLAST of mRNA_A-nodosum_M_contig103.12.2 vs. uniprot
Match: UPI001602F692 (serine/arginine-rich splicing factor 4-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001602F692)

HSP 1 Score: 124 bits (312), Expect = 5.180e-31
Identity = 70/178 (39.33%), Postives = 105/178 (58.99%), Query Frame = 0

Query:   25 RDKDLDRAFRRYGRIEKIDVRMGFAFIEFDDRRDAEEAVSDMDGREIDGARIVVQPGRG------------------HRPNGPKFATR-RTEHRITIEGLDSHTSWQDLKARPRQIFGTAHRDFGRQAGQVLFSDIFFRHGRRWGVVEYLTREDMKTAIRQLDDTRLGGKYIRVREER 183
            R+KD++R FR YGRI +I+++ GF F+EFDD RDA++AV +++G+E+ G R+V++  RG                   R    K+    RT++R+ +E L S  SWQDLK            DF RQAG+V + D   +H +  GVVE+ TR+DMK A+  LD   + G+ I++RE+R
Sbjct:   15 REKDVERFFRGYGRIREINLKNGFGFVEFDDYRDADDAVYELNGKEVLGERVVIEHARGPTRRDYGYGGYYGGGHGRSRSGRDKYGPPIRTDYRVVVENLSSRVSWQDLK------------DFMRQAGEVTYGDAH-KHRKNEGVVEFRTRDDMKKALHTLDGAEINGRKIKLREDR 179

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BLAST of mRNA_A-nodosum_M_contig103.12.2 vs. uniprot
Match: A0A2C9KFU7_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9KFU7_BIOGL)

HSP 1 Score: 124 bits (311), Expect = 5.730e-31
Identity = 73/193 (37.82%), Postives = 113/193 (58.55%), Query Frame = 0

Query:   11 MAEPVSRDKILRYTRDKDLDRAFRRYGRIEKIDVRMGFAFIEFDDRRDAEEAVSDMDGREIDGARIVVQPGRGH-RPNGPKFATR-------------RTEHRITIEGLDSHTSWQDLKARPRQIFGTAHRDFGRQAGQVLFSDIFFRHGRRWGVVEYLTREDMKTAIRQLDDTRLGGKYIRVREERSGRDSR 189
            M   V   ++  + R+KD++R FR YGRI  I ++ G+ F+EFDD RDA++AV +++G+E+ G R+V++  RG  RP  P   +R             RT+HR+ +E L S  SWQDLK            D+ RQAG+V ++D   RH R  G++E+ T  D++ AI +LD T + G+ IR+ E++  + SR
Sbjct:    1 MGTRVYLGRLSYHAREKDIERFFRGYGRIRDIMLKNGYGFVEFDDYRDADDAVYELNGKELCGERVVIEHARGSGRP--PASRSRGSSAWLDKYGPPTRTDHRLIVENLSSRVSWQDLK------------DYMRQAGEVTYADAHKRH-RNEGIIEFATAADLRNAIEKLDGTEINGRKIRLIEDKVKKHSR 178

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BLAST of mRNA_A-nodosum_M_contig103.12.2 vs. uniprot
Match: A0A1B6M680_9HEMI (Uncharacterized protein n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6M680_9HEMI)

HSP 1 Score: 124 bits (310), Expect = 6.310e-31
Identity = 71/184 (38.59%), Postives = 107/184 (58.15%), Query Frame = 0

Query:   25 RDKDLDRAFRRYGRIEKIDVRMGFAFIEFDDRRDAEEAVSDMDGREIDGARIVVQPGRG-------------------------HRPNGPKFATRRTEHRITIEGLDSHTSWQDLKARPRQIFGTAHRDFGRQAGQVLFSDIFFRHGRRWGVVEYLTREDMKTAIRQLDDTRLGGKYIRVREER 183
            R++DL+R FR+YGRI+++ ++ GFAF+EFDD RDA++AV +++G+E+ G R++V+  RG                         HR +       RTE+R+ +E L +  SWQDLK            D+ RQAG+V ++D   +  R  GVVE+ T  DMK A+ +LDDT L G+ IR+ E+R
Sbjct:   15 RERDLERFFRKYGRIKEVAMKNGFAFVEFDDHRDADDAVYELNGKELLGERVIVELARGTARRSDRSFGGSSRRRSSWYGKEPDHRISDRYGPPTRTEYRLIVENLSTRVSWQDLK------------DYMRQAGEVTYADAH-KDRRNEGVVEFATSSDMKNALDKLDDTELNGRRIRLVEDR 185

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BLAST of mRNA_A-nodosum_M_contig103.12.2 vs. uniprot
Match: A0A1S4EWT4_AEDAE (Arginine/serine-rich splicing factor n=2 Tax=Aedes aegypti TaxID=7159 RepID=A0A1S4EWT4_AEDAE)

HSP 1 Score: 122 bits (307), Expect = 1.890e-30
Identity = 74/181 (40.88%), Postives = 104/181 (57.46%), Query Frame = 0

Query:   11 MAEPVSRDKILRYTRDKDLDRAFRRYGRIEKIDVRMGFAFIEFDDRRDAEEAVSDMDGREIDGARIVVQP--------GRGHRPNGPKFATRRTEHRITIEGLDSHTSWQDLKARPRQIFGTAHRDFGRQAGQVLFSDIFFRHGRRWGVVEYLTREDMKTAIRQLDDTRLGGKYIRVREER 183
            M   V   K+   TR++DL+R F  +GRI +I +R G+AF+EFDD RDAE+A+ +++G ++ G RIVV+         G   RP  P+    RT HR+ +E L S   W++LKA  R+            AG V F+D   R     GVVE+ +R DMK A++  DDT L G+YIR+ EER
Sbjct:    1 MGSRVYAGKLPHDTRERDLERFFEGFGRIREILLRRGYAFVEFDDYRDAEDAIYELNGAKLLGQRIVVEATKRPPRFGGASSRPKPPQ----RTYHRLIVENLSSRIDWRELKAHMRK------------AGSVTFADAH-RDRMNEGVVEFASRHDMKQALKMFDDTELNGRYIRLYEER 164

[Close]

BLAST of mRNA_A-nodosum_M_contig103.12.2 vs. uniprot
Match: A0A8J2LHK9_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2LHK9_9HEXA)

HSP 1 Score: 123 bits (308), Expect = 2.490e-30
Identity = 72/177 (40.68%), Postives = 106/177 (59.89%), Query Frame = 0

Query:   25 RDKDLDRAFRRYGRIEKIDVRMGFAFIEFDDRRDAEEAVSDMDGREIDGARIVVQPGRG---------HRPNGPKFATR------RTEHRITIEGLDSHTSWQDLKARPRQIFGTAHRDFGRQAGQVLFSDIFFRHGRRWGVVEYLTREDMKTAIRQLDDTRLGGKYIRVREERSGR 186
            R+KDL+R  + YGRI ++ V+ G+ F+EFDD RDA++AV +++G+E+ G R++V+  RG          R   P+ + +      R+E+R+ +E L S  SWQDLK            DF R+AG+V F+D   +  R  GVVE+ T  DMK AI +LDDT L G+ IR+ E+R  R
Sbjct:   16 REKDLERFVKGYGRIREVLVKNGYGFVEFDDYRDADDAVYELNGKELLGERVIVERARGVPRDDRGRSSRRGPPRGSDKXXXXXTRSEYRVIVENLSSRVSWQDLK------------DFMRRAGEVTFADAH-KQRRNEGVVEFATYSDMKAAIEKLDDTELNGRRIRLTEDRGRR 179

The following BLAST results are available for this feature:

BLAST of mRNA_A-nodosum_M_contig103.12.2 vs. uniprot

BLAST of mRNA_A-nodosum_M_contig103.12.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FXG5_ECTSI	1.340e-91	82.04	Arginine/serine-rich splicing factor 6 n=2 Tax=Ect...	[more]
A0A7S0Q5F1_9EUKA	2.410e-34	43.36	Hypothetical protein (Fragment) n=1 Tax=Coccolithu...	[more]
T1D6F1_9DIPT	1.470e-32	41.14	Putative b52 (Fragment) n=1 Tax=Psorophora albipes...	[more]
A0A182HC83_AEDAL	5.090e-32	41.14	Uncharacterized protein n=4 Tax=Aedini TaxID=10569...	[more]
UPI00096B0064	2.170e-31	40.22	serine-arginine protein 55-like n=1 Tax=Aethina tu...	[more]
UPI001602F692	5.180e-31	39.33	serine/arginine-rich splicing factor 4-like n=1 Ta...	[more]
A0A2C9KFU7_BIOGL	5.730e-31	37.82	Uncharacterized protein n=1 Tax=Biomphalaria glabr...	[more]
A0A1B6M680_9HEMI	6.310e-31	38.59	Uncharacterized protein n=1 Tax=Graphocephala atro...	[more]
A0A1S4EWT4_AEDAE	1.890e-30	40.88	Arginine/serine-rich splicing factor n=2 Tax=Aedes...	[more]
A0A8J2LHK9_9HEXA	2.490e-30	40.68	Hypothetical protein n=1 Tax=Allacma fusca TaxID=3...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 99..180 e-value: 0.0087 score: 24.9 coord: 20..79 e-value: 2.7E-8 score: 43.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 128..178 e-value: 2.5E-4 score: 20.8 coord: 23..76 e-value: 2.7E-12 score: 46.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 1..83 score: 13.975933
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 98..184 score: 9.456252
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 18..94 e-value: 4.6E-17 score: 64.0
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 97..183 e-value: 6.3E-15 score: 56.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 234..249
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 205..233
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..249
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..204
None	No IPR available	PANTHER	PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	coord: 24..247
None	No IPR available	PANTHER	PTHR23003:SF36	SERINE AND ARGININE-RICH-SPLICING FACTOR 5A-RELATED	coord: 24..247
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 23..181

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A-nodosum_M_contig103	contig	A-nodosum_M_contig103:180259..186732 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ascophyllum nodosum dioecious OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_A-nodosum_M_contig103.12.2	mRNA_A-nodosum_M_contig103.12.2	Ascophyllum nodosum dioecious	mRNA	A-nodosum_M_contig103 177194..186895 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_A-nodosum_M_contig103.12.2 ID=prot_A-nodosum_M_contig103.12.2|Name=mRNA_A-nodosum_M_contig103.12.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=250bp
MEMSSLTRDGMAEPVSRDKILRYTRDKDLDRAFRRYGRIEKIDVRMGFAF
IEFDDRRDAEEAVSDMDGREIDGARIVVQPGRGHRPNGPKFATRRTEHRI
TIEGLDSHTSWQDLKARPRQIFGTAHRDFGRQAGQVLFSDIFFRHGRRWG
VVEYLTREDMKTAIRQLDDTRLGGKYIRVREERSGRDSRSRSRSRRRSRT
DSRSPSRRHRSPTPDDRGRGKGRGRDRGNSRSRSRSPARHSRSRSRHSG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf