prot_A-nodosum_M_contig10221.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig10221.1.1
Unique Nameprot_A-nodosum_M_contig10221.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length311
Homology
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Match: A0A2A4JGY8_HELVI (CCHC-type domain-containing protein (Fragment) n=1 Tax=Heliothis virescens TaxID=7102 RepID=A0A2A4JGY8_HELVI)

HSP 1 Score: 67.4 bits (163), Expect = 5.930e-9
Identity = 75/293 (25.60%), Postives = 118/293 (40.27%), Query Frame = 0
Query:    7 AWRILVDSYSATTRGANLQRMKALTNRRVKPGSNPIHTLSEMADDARDLRANGTDISDEIVCLLFLQVLPEEYDVFRQIIEREKEPLTIDGLMGELRARFDLSRKVKSRSSDTALVASGSRREKSKRDGAKHKVMGKKQSSSRGYNSAGSAATSEKEGDKVSCSICKETGHKWFKCSQ-RIXXXXXXXXXXXXXCPKMKKEDANLAISDQTWIVDSAATRHMAPNPVSMTNYRECDGV--VRVANGVALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQFTR 296
            AW  L  ++        +  M AL + +++  S+    ++ +   A+ L+   T   D++V ++ L+ LPEEY   R  +E     LT + +  +L           S S+D+AL  S S+    KR+G   K M                        KV C  C + GHK   C + RI                +       + +   W +DS A+RHM+ N     N     G+  VR AN   +  EG GDI++S +       L + +V +VP L  NLLS+    R
Sbjct:   81 AWDSLAKAFEDKGVNRRITLMNALLDEKLENHSSMHQYVAAVMSLAQKLKDIATGFDDDLVAVVLLRGLPEEYRPMRMALEHSGMKLTSENVRQKLLQEDSRQGCSTSSSADSALAVSKSK----KRNGNNDKNM-----------------------TKVKCFKCGKKGHKKPDCPEGRIASTTSKSKDFV----SLSSFSTGNSFNPSEWYIDSGASRHMSFNKHWFQNLVMNVGMNNVRCANDDKMECEGQGDIMVSMKGRM----LAVRDVMYVPSLRVNLLSVSSNPR 338          
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Match: A0A5C7GYD6_9ROSI (CCHC-type domain-containing protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7GYD6_9ROSI)

HSP 1 Score: 63.2 bits (152), Expect = 2.280e-7
Identity = 74/281 (26.33%), Postives = 119/281 (42.35%), Query Frame = 0
Query:   35 VKPGSNPIHT-LSEMADDARDLRANGTDISDEIVCLLFLQVLPEEYDVFRQIIEREKEPLTIDGLMGELRARFDLSRKVKSRSSDTALVASGSRREKSKRDGAKHKVMGKKQSSSRGYNSAGSAATSEKEGDKVSCSICKETGHKWFKCSQRIXXXXXXXXXXXXXCPKMKKEDANLAISDQTWIVDSAATRHMAPNPVSMTNYR---ECDGVVRVANGVALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQFTRRAGHSYRGDGDGVTL 311
            V  G+  +H  + +M + A  LR   T+ISD  +    L+ LP E+DV +     ++   T+D +   +    +  RK K++S+   +V    + +K    G K K  GKK   S G N A      + E  K  C  C + GH    C +               C +    D  +     +W VDS AT H+  +     + R   + + VV + NG  + +E +G + +   S      L L +VAFVP L  NL+S+ +     G+S+     G  L
Sbjct:  157 VYDGTGDVHEHIMKMTNMAMKLRELKTEISDSHLVWQVLESLPSEFDVLKTSYNTQEAEWTLDQMTAIVVQEEETIRKSKNQSA--YMVTHSDKGKKKFYGGKKFKPHGKKAGKSNGLNKA------KGEDMKGKCFWCHKKGHMRKDCFK--FKNHLAGTPLALVCSESNLVDVPV----NSWWVDSGATIHVTNSVQGFRSKRKPSDKEAVVFMGNGEKVFVEFMGVVRLPLTSG---KFLDLADVAFVPSLRRNLISISKLDVN-GYSFEFINKGFVL 419          
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Match: A0A484M467_9ASTE (CCHC-type domain-containing protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484M467_9ASTE)

HSP 1 Score: 62.0 bits (149), Expect = 3.650e-7
Identity = 85/342 (24.85%), Postives = 127/342 (37.13%), Query Frame = 0
Query:    3 SPTAAWRILVDSYSATTRGANLQRMKALTNRRVKPGSNPIHTLSEMADDARDLRANGTDISDEIVCLLFLQVLPEEYDVFRQIIEREKEPLTIDGLMGELRARFDLSRKVKS--RSSDT--ALVASGSRREKSKRDGAKHKVMGKKQSSSRGYNSAGSAATSEKEGDKVSCSICKETGHKWFKCSQRIXXXXXXXXXXXXXCPKMK--KEDANLA--------------------------ISDQTWIVDSAATRHMAPNPVSMTNYRE-CDGVVRVANGVALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQFTRRAGHSYRGDGDGVTL 311
            SP   W  L   Y A +    L   + L   R++     +  ++       +L+     IS+E   LL L  LP+ Y+V+   I   K+ +T++     L + FD  RK K+  RS D   A+   G R   S RD        K Q++S+               ++V C  C E GH                      CPK +  K DANL                            SD  W++ SA   HM          +E     +R+A+   + + GVG + +     F    + L NVA+VP L  NL+SL Q     G+ Y+  G  V +
Sbjct:   64 SPAVIWEKLEKLYMAKSLTNKLLLKRRLYRLRMEDEDTLVGHMNVFNGLIDELKRVDVKISEEDQALLLLNSLPDSYEVYVDTILCGKDTITLEQAQSALLS-FDARRKDKAGVRSDDVVAAIAHGGGRGRSSIRDNKSKHERSKSQNASK---------------NEVRCYKCGELGH------------------IRRDCPKKREGKNDANLVRDGETGSSSLGNGSDELFMVANGHDEASDNDWVLGSACVSHMCSKREHFETLQEGMTKKLRLADDSTVDVMGVGVVKVKM---FDGVVMTLGNVAYVPKLRWNLISLSQLDSE-GYEYKARGRVVRV 367          
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Match: A0A2G3AQ37_CAPCH (Uncharacterized protein n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3AQ37_CAPCH)

HSP 1 Score: 60.5 bits (145), Expect = 5.730e-7
Identity = 36/96 (37.50%), Postives = 54/96 (56.25%), Query Frame = 0
Query:  203 MKKEDANLAISDQTWIVDSAATRHMAPNPVSMTNYREC-DGVVRVANGVALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQFTRR 297
            +KK+     I    WIVDS AT HM P    + ++ E   G V VA+     +EG G++++     +G  +L+L +V+FVP L  NLLS+KQ  +R
Sbjct:  118 IKKDKTRKGIKSM-WIVDSGATHHMTPFIDILVDFDETIKGSVVVADERKTSVEGKGNVVLKLAEKYGNKNLKLNDVSFVPNLDCNLLSVKQLDKR 212          
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Match: W8B900_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8B900_CERCA)

HSP 1 Score: 59.7 bits (143), Expect = 3.020e-6
Identity = 69/304 (22.70%), Postives = 121/304 (39.80%), Query Frame = 0
Query:    8 WRILVDSYSATTRGANLQRMKALTNRRVKPGSNPIHTLSEMADDARDLRANGTDISDEIVCLLFLQVLPEEYDVFRQIIEREKEPLTIDGLMGELRARFDLSRKVKSRSSDTALVASGSRREKSKRDGAKHKVMGKKQSSSRGYNSAGSAATSEKEGDKVSCSICKETGHKWFKCSQRIXXXXXXXXXXXXXCPKMKKEDANLAISDQT----WIVDSAATRHMAPNPVSMTNYRECDGV-VRVANGVALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQFTRRAGH-SYRGD 305
            W  L   Y +         +K+L   ++  G +    L +  D    L      + DE++ +L L  +P EY+ FR  IE + +   ++ L  +L   F+  ++ ++ SS+  L A+       K D  K  +                    EK   K +C  C + GHK  +C  +                  K E+  L +S       W +DS A+ HM          +  +GV + +AN      EG G  ++  +++ G  ++ L    +VP L  NLLS+ + T+R    +++GD
Sbjct:  124 WDKLHSVYQSRGPARQAMLLKSLILHKMTSGDDMREHLRKFFDIVDKLIEMEIVVIDELLTILLLYSVPNEYETFRIAIESQDKLPKVENLKVKLLEEFEARKRNEAISSEDILYAN-------KNDNRKRNL------------------NQEKGNFKYACHSCGKIGHKARECRSKSFRDRKSRISKEQQDSSWKVEEIMLGVSSMKISGKWCLDSGASSHMCAVREKFQCLKPSNGVTLALANDSFTKSEGCG--IVKIKTNKG-CNITLNETLYVPDLRTNLLSVPKMTQRGLEVTFKGD 399          
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Match: A0A484L0L8_9ASTE (CCHC-type domain-containing protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484L0L8_9ASTE)

HSP 1 Score: 58.9 bits (141), Expect = 4.950e-6
Identity = 83/333 (24.92%), Postives = 128/333 (38.44%), Query Frame = 0
Query:    3 SPTAAWRILVDSYSATTRGANLQRMKALTNRRVKPGSNPIHTLSEMADDARDLRANGTDISDEIVCLLFLQVLPEEYDVFRQIIEREKEPLTIDGLMGELRARFDLSRKVKS--RSSDT-ALVASGSRREKSKRDGAKHKVMGKKQSSSRGYNSA-GSAATSEKEGDKVSCSICKETGHKWFKCSQRIXXXXXXXXXXXXXCPKMK--KEDANLAISDQT-------------------------WIVDSAATRHMAPNPVSMTNYRE-CDGVVRVANGVALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQFTRRAGHSYR 303
            SP A W  L   Y A +    L   + L   R++     +  ++       +L+     IS+E   LL L  LP+ Y+++   I   K+ +T++     L + FD  RK K+  +S D  A +A G                G+ +SS R Y S  G + +     ++V    C E GH                      CPK +  K DANL    +T                         W++DSA   HM      +   +E    ++R+A+   + + GVG + M        T   L NVA+VP L  NL+SL Q     G+ Y+
Sbjct:  115 SPAAIWEKLEKLYMAKSLTNKLLLKRRLYRLRMEDEDTLVGHMNVFNGLIDELKWVDVKISEEDQALLLLNSLPDSYEIYVDTILCGKDTITLEQAQSALLS-FDARRKDKAGVQSDDAVAAIAHGG---------------GRGRSSIRDYKSKHGRSKSQNAPKNEVRYYKCGELGH------------------IRRDCPKKREGKNDANLVRDGETGSSLGNESDELFMVANSYDEASGNDWVLDSACVSHMCSRKEHLKTLQEGMTKILRLADNSTVAVMGVGVVKMKMFDGVVRT---LGNVAYVPKLRRNLISLSQLDSE-GYEYK 409          
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Match: A0A2W1BKD7_HELAM (CCHC-type domain-containing protein n=1 Tax=Helicoverpa armigera TaxID=29058 RepID=A0A2W1BKD7_HELAM)

HSP 1 Score: 57.8 bits (138), Expect = 1.250e-5
Identity = 73/300 (24.33%), Postives = 116/300 (38.67%), Query Frame = 0
Query:    7 AWRILVDSYSATTRGANLQRMKALTNRRVKPGSNPIHTLSEMADDARDLRANGTDISDEIVCLLFLQVLPEEYDVFRQIIEREKEPLTIDGLMGELRARFDLSRKVKSRSSDTALVASGSRREKSKRDGAKHKVMGKKQSSSRGYNSAGSAATSEKEGDKVSCSICKETGHKWFKCSQ-RIXXXXXXXXXXXXXCPKMKKEDANLAISDQTWIVDSAATRHMAPNP---------VSMTNYRECDGVVRVANGVALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQFTR 296
            AW  L  ++        +  M AL + ++   S+    ++ +   A+ L+   T   D++V ++ L+ LPEEY   R  +E     LT + +  +L      SR+  S S+D+AL  + S+    KR G                             DK+ C  C + GHK   C + RI                +       +     W +DS A+RHM+ N          V M N       VR AN   +   G GDI++S +       L + +V ++P L  NLLS+    R
Sbjct:   81 AWDSLAKAFEDKGVNRRITLMNALLDEKLDNHSSMHQYVAAVMSLAQKLKDIATGFDDDLVAVVLLRGLPEEYRPMRMALEHSGMKLTSENVRQKLLQED--SRQGTSSSADSALAVNKSK----KRIG---------------------------NNDKLKCFKCGKKGHKKPDCPEGRIAGATSKSKDVV----SLSSFSTGNSFDPSEWYIDSGASRHMSFNKHWFQNLVVNVEMNN-------VRCANDDKMECAGQGDIMVSMKGCM----LAVRDVMYIPSLRVNLLSVSSNPR 332          
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Match: A0A6A1VKW1_9ROSI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1VKW1_9ROSI)

HSP 1 Score: 56.2 bits (134), Expect = 3.980e-5
Identity = 41/134 (30.60%), Postives = 65/134 (48.51%), Query Frame = 0
Query:  165 DKVSCSICKETGHKWFKCSQRIXXXXXXXXXXXXXCPKMKKEDANL-AISDQTWIVDSAATRHMAPNPVSMTNYRE---CDGVVRVANGVALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQF 294
            +++ C +C +TGH    C  R               P      +++ A+ D +W  DSAAT HM  +  ++T        +  V V +G ALPI  +G+  +    D    +L L N++ VPLL+ NLLS++QF
Sbjct:  276 ERLICQVCYKTGHTALHCYNRFNQSFQAPPP-----PSFTAHYSSVPAVCDSSWYPDSAATNHMTNDFSNLTIQPSEYFGEDQVWVGDGSALPIHHIGNTNLPTPHD----NLLLHNLSHVPLLTKNLLSVRQF 400          
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Match: A0A0J7K4R5_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K4R5_LASNI)

HSP 1 Score: 55.8 bits (133), Expect = 5.520e-5
Identity = 73/305 (23.93%), Postives = 112/305 (36.72%), Query Frame = 0
Query:    6 AAWRILVDSYSATTRGANLQRMKALTNRRVKPGSNPIHTLSEMADDARDLRANGTDISDEIVCLLFLQVLPEEYDVFRQIIEREKEPLTIDGLMGELRARFDLSRKVKSRSS------DTALVASGSRREKSKRDGAKHKVMGKKQSSSRGYNSAGSAATSEKEGDKVSCSICKETGHKWFKCSQRIXXXXXXXXXXXXXCPKMKKEDANLAISDQT-------WIVDSAATRHMAPN--PVSMTNYRECDGVVRVANGVALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQFT 295
            AAW  L   + +T         K L   + + G      +++  + A  L   G  I D+++ ++ L  LP +++ F   IE   E   ID L  +L        K   R+       + AL++    R+K KR                  NS    A   +    V C  C + GHK   C  +                   K DA  AI   T       W +DS ATRHM  +    +M N  E   V   A    L     G+I +   +   + +++L +  FVP L +NL+S+   T
Sbjct:   83 AAWDDLKRVHESTGPVRKATLYKQLYRMKKESGITMNAYINDFTNKAEQLTEAGIKIPDDLLSIMLLSSLPNDFENFSIAIESRDEIPNIDSLKVKLLEEEARQNKRMGRNDSENGQKNDALLSHTHARDKQKR-----------------VNSTDKFAKQNQRKFTVKCFNCSKLGHKSADCRLKTKRGESN-----------SKSDAMTAIVCNTEVSKSNEWFLDSGATRHMCNDNRKFTMLNDTERSKVFTAAEH-CLDSSSTGEINLRVNNRGSKNNVKLEDTMFVPALRNNLMSVSTIT 358          
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Match: A0A6A1WRJ5_9ROSI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1WRJ5_9ROSI)

HSP 1 Score: 55.8 bits (133), Expect = 6.050e-5
Identity = 45/141 (31.91%), Postives = 62/141 (43.97%), Query Frame = 0
Query:  165 DKVSCSICKETGHKWFKCSQRIXXXXXXXXXXXXXCPKMKKEDANL----AISDQTWIVDSAATRHM-------APNPVSMTNYRECDGVVRVANGVALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQF 294
            D+ +C +C ++GH   +C  R               P      AN     A  D  W  DSAA+ HM       + NP   T   +    VRV +G ALPI   G   +S  S      L+L N+  VPLL+ NL+S++QF
Sbjct:  126 DRPTCQVCFKSGHTALQCYNRFNHAFQ--------APPPASFTANYSSIPAGPDSYWYPDSAASNHMTHDYTNLSHNPTEYTGEEQ----VRVGDGSALPIHHTGGSSLSTPS----RSLRLSNLLHVPLLTKNLISVRQF 250          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A2A4JGY8_HELVI5.930e-925.60CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A5C7GYD6_9ROSI2.280e-726.33CCHC-type domain-containing protein n=1 Tax=Acer y... [more]
A0A484M467_9ASTE3.650e-724.85CCHC-type domain-containing protein n=1 Tax=Cuscut... [more]
A0A2G3AQ37_CAPCH5.730e-737.50Uncharacterized protein n=1 Tax=Capsicum chinense ... [more]
W8B900_CERCA3.020e-622.70Retrovirus-related Pol polyprotein from transposon... [more]
A0A484L0L8_9ASTE4.950e-624.92CCHC-type domain-containing protein n=1 Tax=Cuscut... [more]
A0A2W1BKD7_HELAM1.250e-524.33CCHC-type domain-containing protein n=1 Tax=Helico... [more]
A0A6A1VKW1_9ROSI3.980e-530.60Retrovirus-related Pol polyprotein from transposon... [more]
A0A0J7K4R5_LASNI5.520e-523.93Retrovirus-related pol polyprotein from transposon... [more]
A0A6A1WRJ5_9ROSI6.050e-531.91Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 2..103
e-value: 3.0E-12
score: 46.5
NoneNo IPR availableGENE3D4.10.60.10coord: 161..212
e-value: 1.7E-5
score: 26.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..159
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 145..159
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 162..203

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10221contigA-nodosum_M_contig10221:23..1072 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10221.1.1mRNA_A-nodosum_M_contig10221.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig10221 23..1072 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig10221.1.1 ID=prot_A-nodosum_M_contig10221.1.1|Name=mRNA_A-nodosum_M_contig10221.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=311bp
VTSPTAAWRILVDSYSATTRGANLQRMKALTNRRVKPGSNPIHTLSEMAD
DARDLRANGTDISDEIVCLLFLQVLPEEYDVFRQIIEREKEPLTIDGLMG
ELRARFDLSRKVKSRSSDTALVASGSRREKSKRDGAKHKVMGKKQSSSRG
YNSAGSAATSEKEGDKVSCSICKETGHKWFKCSQRICSICRETGHDPNKC
PKMKKEDANLAISDQTWIVDSAATRHMAPNPVSMTNYRECDGVVRVANGV
ALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQFTRRAGH
SYRGDGDGVTL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036875Znf_CCHC_sf