mRNA_A-nodosum_M_contig10221.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig10221.1.1
Unique NamemRNA_A-nodosum_M_contig10221.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Match: A0A2A4JGY8_HELVI (CCHC-type domain-containing protein (Fragment) n=1 Tax=Heliothis virescens TaxID=7102 RepID=A0A2A4JGY8_HELVI)

HSP 1 Score: 67.4 bits (163), Expect = 5.930e-9
Identity = 75/293 (25.60%), Postives = 118/293 (40.27%), Query Frame = 1
Query:   19 AWRILVDSYSATTRGANLQRMKALTNRRVKPGSNPIHTLSEMADDARDLRANGTDISDEIVCLLFLQVLPEEYDVFRQIIEREKEPLTIDGLMGELRARFDLSRKVKSRSSDTALVASGSRREKSKRDGAKHKVMGKKQSSSRGYNSAGSAATSEKEGDKVSCSICKETGHKWFKCSQ-RIXXXXXXXXXXXXXCPKMKKEDANLAISDQTWIVDSAATRHMAPNPVSMTNYRECDGV--VRVANGVALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQFTR 888
            AW  L  ++        +  M AL + +++  S+    ++ +   A+ L+   T   D++V ++ L+ LPEEY   R  +E     LT + +  +L           S S+D+AL  S S+    KR+G   K M                        KV C  C + GHK   C + RI                +       + +   W +DS A+RHM+ N     N     G+  VR AN   +  EG GDI++S +       L + +V +VP L  NLLS+    R
Sbjct:   81 AWDSLAKAFEDKGVNRRITLMNALLDEKLENHSSMHQYVAAVMSLAQKLKDIATGFDDDLVAVVLLRGLPEEYRPMRMALEHSGMKLTSENVRQKLLQEDSRQGCSTSSSADSALAVSKSK----KRNGNNDKNM-----------------------TKVKCFKCGKKGHKKPDCPEGRIASTTSKSKDFV----SLSSFSTGNSFNPSEWYIDSGASRHMSFNKHWFQNLVMNVGMNNVRCANDDKMECEGQGDIMVSMKGRM----LAVRDVMYVPSLRVNLLSVSSNPR 338          
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Match: A0A5C7GYD6_9ROSI (CCHC-type domain-containing protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7GYD6_9ROSI)

HSP 1 Score: 63.2 bits (152), Expect = 2.280e-7
Identity = 74/281 (26.33%), Postives = 119/281 (42.35%), Query Frame = 1
Query:  103 VKPGSNPIHT-LSEMADDARDLRANGTDISDEIVCLLFLQVLPEEYDVFRQIIEREKEPLTIDGLMGELRARFDLSRKVKSRSSDTALVASGSRREKSKRDGAKHKVMGKKQSSSRGYNSAGSAATSEKEGDKVSCSICKETGHKWFKCSQRIXXXXXXXXXXXXXCPKMKKEDANLAISDQTWIVDSAATRHMAPNPVSMTNYR---ECDGVVRVANGVALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQFTRRAGHSYRGDGDGVTL 933
            V  G+  +H  + +M + A  LR   T+ISD  +    L+ LP E+DV +     ++   T+D +   +    +  RK K++S+   +V    + +K    G K K  GKK   S G N A      + E  K  C  C + GH    C +               C +    D  +     +W VDS AT H+  +     + R   + + VV + NG  + +E +G + +   S      L L +VAFVP L  NL+S+ +     G+S+     G  L
Sbjct:  157 VYDGTGDVHEHIMKMTNMAMKLRELKTEISDSHLVWQVLESLPSEFDVLKTSYNTQEAEWTLDQMTAIVVQEEETIRKSKNQSA--YMVTHSDKGKKKFYGGKKFKPHGKKAGKSNGLNKA------KGEDMKGKCFWCHKKGHMRKDCFK--FKNHLAGTPLALVCSESNLVDVPV----NSWWVDSGATIHVTNSVQGFRSKRKPSDKEAVVFMGNGEKVFVEFMGVVRLPLTSG---KFLDLADVAFVPSLRRNLISISKLDVN-GYSFEFINKGFVL 419          
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Match: A0A484M467_9ASTE (CCHC-type domain-containing protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484M467_9ASTE)

HSP 1 Score: 62.0 bits (149), Expect = 3.650e-7
Identity = 85/342 (24.85%), Postives = 127/342 (37.13%), Query Frame = 1
Query:    7 SPTAAWRILVDSYSATTRGANLQRMKALTNRRVKPGSNPIHTLSEMADDARDLRANGTDISDEIVCLLFLQVLPEEYDVFRQIIEREKEPLTIDGLMGELRARFDLSRKVKS--RSSDT--ALVASGSRREKSKRDGAKHKVMGKKQSSSRGYNSAGSAATSEKEGDKVSCSICKETGHKWFKCSQRIXXXXXXXXXXXXXCPKMK--KEDANLA--------------------------ISDQTWIVDSAATRHMAPNPVSMTNYRE-CDGVVRVANGVALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQFTRRAGHSYRGDGDGVTL 933
            SP   W  L   Y A +    L   + L   R++     +  ++       +L+     IS+E   LL L  LP+ Y+V+   I   K+ +T++     L + FD  RK K+  RS D   A+   G R   S RD        K Q++S+               ++V C  C E GH                      CPK +  K DANL                            SD  W++ SA   HM          +E     +R+A+   + + GVG + +     F    + L NVA+VP L  NL+SL Q     G+ Y+  G  V +
Sbjct:   64 SPAVIWEKLEKLYMAKSLTNKLLLKRRLYRLRMEDEDTLVGHMNVFNGLIDELKRVDVKISEEDQALLLLNSLPDSYEVYVDTILCGKDTITLEQAQSALLS-FDARRKDKAGVRSDDVVAAIAHGGGRGRSSIRDNKSKHERSKSQNASK---------------NEVRCYKCGELGH------------------IRRDCPKKREGKNDANLVRDGETGSSSLGNGSDELFMVANGHDEASDNDWVLGSACVSHMCSKREHFETLQEGMTKKLRLADDSTVDVMGVGVVKVKM---FDGVVMTLGNVAYVPKLRWNLISLSQLDSE-GYEYKARGRVVRV 367          
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Match: A0A2G3AQ37_CAPCH (Uncharacterized protein n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3AQ37_CAPCH)

HSP 1 Score: 60.5 bits (145), Expect = 5.730e-7
Identity = 36/96 (37.50%), Postives = 54/96 (56.25%), Query Frame = 1
Query:  607 MKKEDANLAISDQTWIVDSAATRHMAPNPVSMTNYREC-DGVVRVANGVALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQFTRR 891
            +KK+     I    WIVDS AT HM P    + ++ E   G V VA+     +EG G++++     +G  +L+L +V+FVP L  NLLS+KQ  +R
Sbjct:  118 IKKDKTRKGIKSM-WIVDSGATHHMTPFIDILVDFDETIKGSVVVADERKTSVEGKGNVVLKLAEKYGNKNLKLNDVSFVPNLDCNLLSVKQLDKR 212          
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Match: W8B900_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8B900_CERCA)

HSP 1 Score: 59.7 bits (143), Expect = 3.020e-6
Identity = 69/304 (22.70%), Postives = 121/304 (39.80%), Query Frame = 1
Query:   22 WRILVDSYSATTRGANLQRMKALTNRRVKPGSNPIHTLSEMADDARDLRANGTDISDEIVCLLFLQVLPEEYDVFRQIIEREKEPLTIDGLMGELRARFDLSRKVKSRSSDTALVASGSRREKSKRDGAKHKVMGKKQSSSRGYNSAGSAATSEKEGDKVSCSICKETGHKWFKCSQRIXXXXXXXXXXXXXCPKMKKEDANLAISDQT----WIVDSAATRHMAPNPVSMTNYRECDGV-VRVANGVALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQFTRRAGH-SYRGD 915
            W  L   Y +         +K+L   ++  G +    L +  D    L      + DE++ +L L  +P EY+ FR  IE + +   ++ L  +L   F+  ++ ++ SS+  L A+       K D  K  +                    EK   K +C  C + GHK  +C  +                  K E+  L +S       W +DS A+ HM          +  +GV + +AN      EG G  ++  +++ G  ++ L    +VP L  NLLS+ + T+R    +++GD
Sbjct:  124 WDKLHSVYQSRGPARQAMLLKSLILHKMTSGDDMREHLRKFFDIVDKLIEMEIVVIDELLTILLLYSVPNEYETFRIAIESQDKLPKVENLKVKLLEEFEARKRNEAISSEDILYAN-------KNDNRKRNL------------------NQEKGNFKYACHSCGKIGHKARECRSKSFRDRKSRISKEQQDSSWKVEEIMLGVSSMKISGKWCLDSGASSHMCAVREKFQCLKPSNGVTLALANDSFTKSEGCG--IVKIKTNKG-CNITLNETLYVPDLRTNLLSVPKMTQRGLEVTFKGD 399          
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Match: A0A484L0L8_9ASTE (CCHC-type domain-containing protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484L0L8_9ASTE)

HSP 1 Score: 58.9 bits (141), Expect = 4.950e-6
Identity = 83/333 (24.92%), Postives = 128/333 (38.44%), Query Frame = 1
Query:    7 SPTAAWRILVDSYSATTRGANLQRMKALTNRRVKPGSNPIHTLSEMADDARDLRANGTDISDEIVCLLFLQVLPEEYDVFRQIIEREKEPLTIDGLMGELRARFDLSRKVKS--RSSDT-ALVASGSRREKSKRDGAKHKVMGKKQSSSRGYNSA-GSAATSEKEGDKVSCSICKETGHKWFKCSQRIXXXXXXXXXXXXXCPKMK--KEDANLAISDQT-------------------------WIVDSAATRHMAPNPVSMTNYRE-CDGVVRVANGVALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQFTRRAGHSYR 909
            SP A W  L   Y A +    L   + L   R++     +  ++       +L+     IS+E   LL L  LP+ Y+++   I   K+ +T++     L + FD  RK K+  +S D  A +A G                G+ +SS R Y S  G + +     ++V    C E GH                      CPK +  K DANL    +T                         W++DSA   HM      +   +E    ++R+A+   + + GVG + M        T   L NVA+VP L  NL+SL Q     G+ Y+
Sbjct:  115 SPAAIWEKLEKLYMAKSLTNKLLLKRRLYRLRMEDEDTLVGHMNVFNGLIDELKWVDVKISEEDQALLLLNSLPDSYEIYVDTILCGKDTITLEQAQSALLS-FDARRKDKAGVQSDDAVAAIAHGG---------------GRGRSSIRDYKSKHGRSKSQNAPKNEVRYYKCGELGH------------------IRRDCPKKREGKNDANLVRDGETGSSLGNESDELFMVANSYDEASGNDWVLDSACVSHMCSRKEHLKTLQEGMTKILRLADNSTVAVMGVGVVKMKMFDGVVRT---LGNVAYVPKLRRNLISLSQLDSE-GYEYK 409          
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Match: A0A2W1BKD7_HELAM (CCHC-type domain-containing protein n=1 Tax=Helicoverpa armigera TaxID=29058 RepID=A0A2W1BKD7_HELAM)

HSP 1 Score: 57.8 bits (138), Expect = 1.250e-5
Identity = 73/300 (24.33%), Postives = 116/300 (38.67%), Query Frame = 1
Query:   19 AWRILVDSYSATTRGANLQRMKALTNRRVKPGSNPIHTLSEMADDARDLRANGTDISDEIVCLLFLQVLPEEYDVFRQIIEREKEPLTIDGLMGELRARFDLSRKVKSRSSDTALVASGSRREKSKRDGAKHKVMGKKQSSSRGYNSAGSAATSEKEGDKVSCSICKETGHKWFKCSQ-RIXXXXXXXXXXXXXCPKMKKEDANLAISDQTWIVDSAATRHMAPNP---------VSMTNYRECDGVVRVANGVALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQFTR 888
            AW  L  ++        +  M AL + ++   S+    ++ +   A+ L+   T   D++V ++ L+ LPEEY   R  +E     LT + +  +L      SR+  S S+D+AL  + S+    KR G                             DK+ C  C + GHK   C + RI                +       +     W +DS A+RHM+ N          V M N       VR AN   +   G GDI++S +       L + +V ++P L  NLLS+    R
Sbjct:   81 AWDSLAKAFEDKGVNRRITLMNALLDEKLDNHSSMHQYVAAVMSLAQKLKDIATGFDDDLVAVVLLRGLPEEYRPMRMALEHSGMKLTSENVRQKLLQED--SRQGTSSSADSALAVNKSK----KRIG---------------------------NNDKLKCFKCGKKGHKKPDCPEGRIAGATSKSKDVV----SLSSFSTGNSFDPSEWYIDSGASRHMSFNKHWFQNLVVNVEMNN-------VRCANDDKMECAGQGDIMVSMKGCM----LAVRDVMYIPSLRVNLLSVSSNPR 332          
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Match: A0A6A1VKW1_9ROSI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1VKW1_9ROSI)

HSP 1 Score: 56.2 bits (134), Expect = 3.980e-5
Identity = 41/134 (30.60%), Postives = 65/134 (48.51%), Query Frame = 1
Query:  493 DKVSCSICKETGHKWFKCSQRIXXXXXXXXXXXXXCPKMKKEDANL-AISDQTWIVDSAATRHMAPNPVSMTNYRE---CDGVVRVANGVALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQF 882
            +++ C +C +TGH    C  R               P      +++ A+ D +W  DSAAT HM  +  ++T        +  V V +G ALPI  +G+  +    D    +L L N++ VPLL+ NLLS++QF
Sbjct:  276 ERLICQVCYKTGHTALHCYNRFNQSFQAPPP-----PSFTAHYSSVPAVCDSSWYPDSAATNHMTNDFSNLTIQPSEYFGEDQVWVGDGSALPIHHIGNTNLPTPHD----NLLLHNLSHVPLLTKNLLSVRQF 400          
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Match: A0A0J7K4R5_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K4R5_LASNI)

HSP 1 Score: 55.8 bits (133), Expect = 5.520e-5
Identity = 73/305 (23.93%), Postives = 112/305 (36.72%), Query Frame = 1
Query:   16 AAWRILVDSYSATTRGANLQRMKALTNRRVKPGSNPIHTLSEMADDARDLRANGTDISDEIVCLLFLQVLPEEYDVFRQIIEREKEPLTIDGLMGELRARFDLSRKVKSRSS------DTALVASGSRREKSKRDGAKHKVMGKKQSSSRGYNSAGSAATSEKEGDKVSCSICKETGHKWFKCSQRIXXXXXXXXXXXXXCPKMKKEDANLAISDQT-------WIVDSAATRHMAPN--PVSMTNYRECDGVVRVANGVALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQFT 885
            AAW  L   + +T         K L   + + G      +++  + A  L   G  I D+++ ++ L  LP +++ F   IE   E   ID L  +L        K   R+       + AL++    R+K KR                  NS    A   +    V C  C + GHK   C  +                   K DA  AI   T       W +DS ATRHM  +    +M N  E   V   A    L     G+I +   +   + +++L +  FVP L +NL+S+   T
Sbjct:   83 AAWDDLKRVHESTGPVRKATLYKQLYRMKKESGITMNAYINDFTNKAEQLTEAGIKIPDDLLSIMLLSSLPNDFENFSIAIESRDEIPNIDSLKVKLLEEEARQNKRMGRNDSENGQKNDALLSHTHARDKQKR-----------------VNSTDKFAKQNQRKFTVKCFNCSKLGHKSADCRLKTKRGESN-----------SKSDAMTAIVCNTEVSKSNEWFLDSGATRHMCNDNRKFTMLNDTERSKVFTAAEH-CLDSSSTGEINLRVNNRGSKNNVKLEDTMFVPALRNNLMSVSTIT 358          
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Match: A0A6A1WRJ5_9ROSI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1WRJ5_9ROSI)

HSP 1 Score: 55.8 bits (133), Expect = 6.050e-5
Identity = 45/141 (31.91%), Postives = 62/141 (43.97%), Query Frame = 1
Query:  493 DKVSCSICKETGHKWFKCSQRIXXXXXXXXXXXXXCPKMKKEDANL----AISDQTWIVDSAATRHM-------APNPVSMTNYRECDGVVRVANGVALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQF 882
            D+ +C +C ++GH   +C  R               P      AN     A  D  W  DSAA+ HM       + NP   T   +    VRV +G ALPI   G   +S  S      L+L N+  VPLL+ NL+S++QF
Sbjct:  126 DRPTCQVCFKSGHTALQCYNRFNHAFQ--------APPPASFTANYSSIPAGPDSYWYPDSAASNHMTHDYTNLSHNPTEYTGEEQ----VRVGDGSALPIHHTGGSSLSTPS----RSLRLSNLLHVPLLTKNLISVRQF 250          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A2A4JGY8_HELVI5.930e-925.60CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A5C7GYD6_9ROSI2.280e-726.33CCHC-type domain-containing protein n=1 Tax=Acer y... [more]
A0A484M467_9ASTE3.650e-724.85CCHC-type domain-containing protein n=1 Tax=Cuscut... [more]
A0A2G3AQ37_CAPCH5.730e-737.50Uncharacterized protein n=1 Tax=Capsicum chinense ... [more]
W8B900_CERCA3.020e-622.70Retrovirus-related Pol polyprotein from transposon... [more]
A0A484L0L8_9ASTE4.950e-624.92CCHC-type domain-containing protein n=1 Tax=Cuscut... [more]
A0A2W1BKD7_HELAM1.250e-524.33CCHC-type domain-containing protein n=1 Tax=Helico... [more]
A0A6A1VKW1_9ROSI3.980e-530.60Retrovirus-related Pol polyprotein from transposon... [more]
A0A0J7K4R5_LASNI5.520e-523.93Retrovirus-related pol polyprotein from transposon... [more]
A0A6A1WRJ5_9ROSI6.050e-531.91Retrovirus-related Pol polyprotein from transposon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10221contigA-nodosum_M_contig10221:23..1072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog28532.XP_010527600.1
PFAMsDUF4219,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size933
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.46e-12
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37ITA@33090|Viridiplantae,3GHQJ@35493|Streptophyta,3I1JM@3699|Brassicales
Descriptiongag-polypeptide of LTR copia-type
Cds size933
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866389.2388372-CDS-A-nodosum_M_contig10221:22..6671680866389.2388372-CDS-A-nodosum_M_contig10221:22..667Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10221 23..667 +
1680866389.251009-CDS-A-nodosum_M_contig10221:784..10721680866389.251009-CDS-A-nodosum_M_contig10221:784..1072Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig10221 785..1072 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10221.1.1prot_A-nodosum_M_contig10221.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig10221 23..1072 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig10221.1.1

>prot_A-nodosum_M_contig10221.1.1 ID=prot_A-nodosum_M_contig10221.1.1|Name=mRNA_A-nodosum_M_contig10221.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=311bp
VTSPTAAWRILVDSYSATTRGANLQRMKALTNRRVKPGSNPIHTLSEMAD
DARDLRANGTDISDEIVCLLFLQVLPEEYDVFRQIIEREKEPLTIDGLMG
ELRARFDLSRKVKSRSSDTALVASGSRREKSKRDGAKHKVMGKKQSSSRG
YNSAGSAATSEKEGDKVSCSICKETGHKWFKCSQRICSICRETGHDPNKC
PKMKKEDANLAISDQTWIVDSAATRHMAPNPVSMTNYRECDGVVRVANGV
ALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQFTRRAGH
SYRGDGDGVTL
back to top

mRNA from alignment at A-nodosum_M_contig10221:23..1072+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig10221.1.1 ID=mRNA_A-nodosum_M_contig10221.1.1|Name=mRNA_A-nodosum_M_contig10221.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1050bp|location=Sequence derived from alignment at A-nodosum_M_contig10221:23..1072+ (Ascophyllum nodosum dioecious)
GTTACCTCTCCAACTGCTGCGTGGCGAATTCTGGTAGATTCATACAGCGC TACTACGCGAGGTGCAAACCTACAACGCATGAAAGCGCTTACGAACAGAC GTGTGAAACCTGGCTCCAATCCAATTCACACCCTTTCCGAAATGGCCGAT GATGCCCGTGATTTGCGAGCTAACGGTACTGATATTTCGGACGAAATAGT CTGTCTCCTGTTTCTCCAAGTCTTGCCGGAAGAGTACGACGTCTTTCGGC AGATTATTGAACGAGAAAAGGAACCGCTCACCATCGATGGGCTCATGGGT GAGCTTCGTGCGAGATTCGATCTCTCGAGGAAGGTCAAGTCAAGATCTTC CGACACCGCTCTCGTTGCCTCGGGTTCGAGACGAGAGAAAAGTAAACGAG ATGGAGCAAAGCACAAAGTAATGGGGAAGAAACAGAGTTCTAGTCGCGGC TATAATTCGGCTGGCAGTGCCGCTACATCTGAAAAAGAAGGCGATAAGGT TTCCTGCAGCATTTGCAAGGAAACAGGACATAAATGGTTCAAGTGCTCTC AGCGGATCTGCAGCATCTGCCGAGAAACCGGACACGACCCAAATAAATGT CCCAAGATGAAAAAGGAGGACGCGAACCTGGCGATTTCGGATCAAGTGGG CCTGGTCGCGGATGCAGACGCCTTCGTCTCCATTTCTCAAGGGGAGCGTG AGTTTCGTTTTGGTTGTTCGGGGGGAACGGAGGGGTTAGATTGTGAGATT GGGGAGATAGAGACTTGGATTGTTGACAGTGCTGCAACAAGGCACATGGC CCCGAATCCAGTTTCAATGACTAACTACCGCGAGTGTGACGGCGTTGTTC GCGTTGCCAACGGTGTTGCTCTCCCGATTGAAGGCGTAGGCGATATTCTC ATGAGCTTTCAATCTGACTTCGGAGAGACCGATTTACAGCTTCTTAATGT CGCTTTTGTTCCTCTCCTAAGTCACAATCTCCTGTCGCTTAAGCAGTTCA CACGCCGTGCCGGTCACTCATATCGTGGCGATGGTGACGGGGTGACATTG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig10221:23..1072+

>mRNA_A-nodosum_M_contig10221.1.1 ID=mRNA_A-nodosum_M_contig10221.1.1|Name=mRNA_A-nodosum_M_contig10221.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=933bp|location=Sequence derived from alignment at A-nodosum_M_contig10221:23..1072+ (Ascophyllum nodosum dioecious)
GTTACCTCTCCAACTGCTGCGTGGCGAATTCTGGTAGATTCATACAGCGC
TACTACGCGAGGTGCAAACCTACAACGCATGAAAGCGCTTACGAACAGAC
GTGTGAAACCTGGCTCCAATCCAATTCACACCCTTTCCGAAATGGCCGAT
GATGCCCGTGATTTGCGAGCTAACGGTACTGATATTTCGGACGAAATAGT
CTGTCTCCTGTTTCTCCAAGTCTTGCCGGAAGAGTACGACGTCTTTCGGC
AGATTATTGAACGAGAAAAGGAACCGCTCACCATCGATGGGCTCATGGGT
GAGCTTCGTGCGAGATTCGATCTCTCGAGGAAGGTCAAGTCAAGATCTTC
CGACACCGCTCTCGTTGCCTCGGGTTCGAGACGAGAGAAAAGTAAACGAG
ATGGAGCAAAGCACAAAGTAATGGGGAAGAAACAGAGTTCTAGTCGCGGC
TATAATTCGGCTGGCAGTGCCGCTACATCTGAAAAAGAAGGCGATAAGGT
TTCCTGCAGCATTTGCAAGGAAACAGGACATAAATGGTTCAAGTGCTCTC
AGCGGATCTGCAGCATCTGCCGAGAAACCGGACACGACCCAAATAAATGT
CCCAAGATGAAAAAGGAGGACGCGAACCTGGCGATTTCGGATCAAACTTG
GATTGTTGACAGTGCTGCAACAAGGCACATGGCCCCGAATCCAGTTTCAA
TGACTAACTACCGCGAGTGTGACGGCGTTGTTCGCGTTGCCAACGGTGTT
GCTCTCCCGATTGAAGGCGTAGGCGATATTCTCATGAGCTTTCAATCTGA
CTTCGGAGAGACCGATTTACAGCTTCTTAATGTCGCTTTTGTTCCTCTCC
TAAGTCACAATCTCCTGTCGCTTAAGCAGTTCACACGCCGTGCCGGTCAC
TCATATCGTGGCGATGGTGACGGGGTGACATTG
back to top