mRNA_A-nodosum_M_contig10221.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Match: A0A2A4JGY8_HELVI (CCHC-type domain-containing protein (Fragment) n=1 Tax=Heliothis virescens TaxID=7102 RepID=A0A2A4JGY8_HELVI) HSP 1 Score: 67.4 bits (163), Expect = 5.930e-9 Identity = 75/293 (25.60%), Postives = 118/293 (40.27%), Query Frame = 1
Query: 19 AWRILVDSYSATTRGANLQRMKALTNRRVKPGSNPIHTLSEMADDARDLRANGTDISDEIVCLLFLQVLPEEYDVFRQIIEREKEPLTIDGLMGELRARFDLSRKVKSRSSDTALVASGSRREKSKRDGAKHKVMGKKQSSSRGYNSAGSAATSEKEGDKVSCSICKETGHKWFKCSQ-RIXXXXXXXXXXXXXCPKMKKEDANLAISDQTWIVDSAATRHMAPNPVSMTNYRECDGV--VRVANGVALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQFTR 888
AW L ++ + M AL + +++ S+ ++ + A+ L+ T D++V ++ L+ LPEEY R +E LT + + +L S S+D+AL S S+ KR+G K M KV C C + GHK C + RI + + + W +DS A+RHM+ N N G+ VR AN + EG GDI++S + L + +V +VP L NLLS+ R
Sbjct: 81 AWDSLAKAFEDKGVNRRITLMNALLDEKLENHSSMHQYVAAVMSLAQKLKDIATGFDDDLVAVVLLRGLPEEYRPMRMALEHSGMKLTSENVRQKLLQEDSRQGCSTSSSADSALAVSKSK----KRNGNNDKNM-----------------------TKVKCFKCGKKGHKKPDCPEGRIASTTSKSKDFV----SLSSFSTGNSFNPSEWYIDSGASRHMSFNKHWFQNLVMNVGMNNVRCANDDKMECEGQGDIMVSMKGRM----LAVRDVMYVPSLRVNLLSVSSNPR 338
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Match: A0A5C7GYD6_9ROSI (CCHC-type domain-containing protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7GYD6_9ROSI) HSP 1 Score: 63.2 bits (152), Expect = 2.280e-7 Identity = 74/281 (26.33%), Postives = 119/281 (42.35%), Query Frame = 1
Query: 103 VKPGSNPIHT-LSEMADDARDLRANGTDISDEIVCLLFLQVLPEEYDVFRQIIEREKEPLTIDGLMGELRARFDLSRKVKSRSSDTALVASGSRREKSKRDGAKHKVMGKKQSSSRGYNSAGSAATSEKEGDKVSCSICKETGHKWFKCSQRIXXXXXXXXXXXXXCPKMKKEDANLAISDQTWIVDSAATRHMAPNPVSMTNYR---ECDGVVRVANGVALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQFTRRAGHSYRGDGDGVTL 933
V G+ +H + +M + A LR T+ISD + L+ LP E+DV + ++ T+D + + + RK K++S+ +V + +K G K K GKK S G N A + E K C C + GH C + C + D + +W VDS AT H+ + + R + + VV + NG + +E +G + + S L L +VAFVP L NL+S+ + G+S+ G L
Sbjct: 157 VYDGTGDVHEHIMKMTNMAMKLRELKTEISDSHLVWQVLESLPSEFDVLKTSYNTQEAEWTLDQMTAIVVQEEETIRKSKNQSA--YMVTHSDKGKKKFYGGKKFKPHGKKAGKSNGLNKA------KGEDMKGKCFWCHKKGHMRKDCFK--FKNHLAGTPLALVCSESNLVDVPV----NSWWVDSGATIHVTNSVQGFRSKRKPSDKEAVVFMGNGEKVFVEFMGVVRLPLTSG---KFLDLADVAFVPSLRRNLISISKLDVN-GYSFEFINKGFVL 419
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Match: A0A484M467_9ASTE (CCHC-type domain-containing protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484M467_9ASTE) HSP 1 Score: 62.0 bits (149), Expect = 3.650e-7 Identity = 85/342 (24.85%), Postives = 127/342 (37.13%), Query Frame = 1
Query: 7 SPTAAWRILVDSYSATTRGANLQRMKALTNRRVKPGSNPIHTLSEMADDARDLRANGTDISDEIVCLLFLQVLPEEYDVFRQIIEREKEPLTIDGLMGELRARFDLSRKVKS--RSSDT--ALVASGSRREKSKRDGAKHKVMGKKQSSSRGYNSAGSAATSEKEGDKVSCSICKETGHKWFKCSQRIXXXXXXXXXXXXXCPKMK--KEDANLA--------------------------ISDQTWIVDSAATRHMAPNPVSMTNYRE-CDGVVRVANGVALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQFTRRAGHSYRGDGDGVTL 933
SP W L Y A + L + L R++ + ++ +L+ IS+E LL L LP+ Y+V+ I K+ +T++ L + FD RK K+ RS D A+ G R S RD K Q++S+ ++V C C E GH CPK + K DANL SD W++ SA HM +E +R+A+ + + GVG + + F + L NVA+VP L NL+SL Q G+ Y+ G V +
Sbjct: 64 SPAVIWEKLEKLYMAKSLTNKLLLKRRLYRLRMEDEDTLVGHMNVFNGLIDELKRVDVKISEEDQALLLLNSLPDSYEVYVDTILCGKDTITLEQAQSALLS-FDARRKDKAGVRSDDVVAAIAHGGGRGRSSIRDNKSKHERSKSQNASK---------------NEVRCYKCGELGH------------------IRRDCPKKREGKNDANLVRDGETGSSSLGNGSDELFMVANGHDEASDNDWVLGSACVSHMCSKREHFETLQEGMTKKLRLADDSTVDVMGVGVVKVKM---FDGVVMTLGNVAYVPKLRWNLISLSQLDSE-GYEYKARGRVVRV 367
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Match: A0A2G3AQ37_CAPCH (Uncharacterized protein n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3AQ37_CAPCH) HSP 1 Score: 60.5 bits (145), Expect = 5.730e-7 Identity = 36/96 (37.50%), Postives = 54/96 (56.25%), Query Frame = 1
Query: 607 MKKEDANLAISDQTWIVDSAATRHMAPNPVSMTNYREC-DGVVRVANGVALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQFTRR 891
+KK+ I WIVDS AT HM P + ++ E G V VA+ +EG G++++ +G +L+L +V+FVP L NLLS+KQ +R
Sbjct: 118 IKKDKTRKGIKSM-WIVDSGATHHMTPFIDILVDFDETIKGSVVVADERKTSVEGKGNVVLKLAEKYGNKNLKLNDVSFVPNLDCNLLSVKQLDKR 212
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Match: W8B900_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8B900_CERCA) HSP 1 Score: 59.7 bits (143), Expect = 3.020e-6 Identity = 69/304 (22.70%), Postives = 121/304 (39.80%), Query Frame = 1
Query: 22 WRILVDSYSATTRGANLQRMKALTNRRVKPGSNPIHTLSEMADDARDLRANGTDISDEIVCLLFLQVLPEEYDVFRQIIEREKEPLTIDGLMGELRARFDLSRKVKSRSSDTALVASGSRREKSKRDGAKHKVMGKKQSSSRGYNSAGSAATSEKEGDKVSCSICKETGHKWFKCSQRIXXXXXXXXXXXXXCPKMKKEDANLAISDQT----WIVDSAATRHMAPNPVSMTNYRECDGV-VRVANGVALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQFTRRAGH-SYRGD 915
W L Y + +K+L ++ G + L + D L + DE++ +L L +P EY+ FR IE + + ++ L +L F+ ++ ++ SS+ L A+ K D K + EK K +C C + GHK +C + K E+ L +S W +DS A+ HM + +GV + +AN EG G ++ +++ G ++ L +VP L NLLS+ + T+R +++GD
Sbjct: 124 WDKLHSVYQSRGPARQAMLLKSLILHKMTSGDDMREHLRKFFDIVDKLIEMEIVVIDELLTILLLYSVPNEYETFRIAIESQDKLPKVENLKVKLLEEFEARKRNEAISSEDILYAN-------KNDNRKRNL------------------NQEKGNFKYACHSCGKIGHKARECRSKSFRDRKSRISKEQQDSSWKVEEIMLGVSSMKISGKWCLDSGASSHMCAVREKFQCLKPSNGVTLALANDSFTKSEGCG--IVKIKTNKG-CNITLNETLYVPDLRTNLLSVPKMTQRGLEVTFKGD 399
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Match: A0A484L0L8_9ASTE (CCHC-type domain-containing protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484L0L8_9ASTE) HSP 1 Score: 58.9 bits (141), Expect = 4.950e-6 Identity = 83/333 (24.92%), Postives = 128/333 (38.44%), Query Frame = 1
Query: 7 SPTAAWRILVDSYSATTRGANLQRMKALTNRRVKPGSNPIHTLSEMADDARDLRANGTDISDEIVCLLFLQVLPEEYDVFRQIIEREKEPLTIDGLMGELRARFDLSRKVKS--RSSDT-ALVASGSRREKSKRDGAKHKVMGKKQSSSRGYNSA-GSAATSEKEGDKVSCSICKETGHKWFKCSQRIXXXXXXXXXXXXXCPKMK--KEDANLAISDQT-------------------------WIVDSAATRHMAPNPVSMTNYRE-CDGVVRVANGVALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQFTRRAGHSYR 909
SP A W L Y A + L + L R++ + ++ +L+ IS+E LL L LP+ Y+++ I K+ +T++ L + FD RK K+ +S D A +A G G+ +SS R Y S G + + ++V C E GH CPK + K DANL +T W++DSA HM + +E ++R+A+ + + GVG + M T L NVA+VP L NL+SL Q G+ Y+
Sbjct: 115 SPAAIWEKLEKLYMAKSLTNKLLLKRRLYRLRMEDEDTLVGHMNVFNGLIDELKWVDVKISEEDQALLLLNSLPDSYEIYVDTILCGKDTITLEQAQSALLS-FDARRKDKAGVQSDDAVAAIAHGG---------------GRGRSSIRDYKSKHGRSKSQNAPKNEVRYYKCGELGH------------------IRRDCPKKREGKNDANLVRDGETGSSLGNESDELFMVANSYDEASGNDWVLDSACVSHMCSRKEHLKTLQEGMTKILRLADNSTVAVMGVGVVKMKMFDGVVRT---LGNVAYVPKLRRNLISLSQLDSE-GYEYK 409
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Match: A0A2W1BKD7_HELAM (CCHC-type domain-containing protein n=1 Tax=Helicoverpa armigera TaxID=29058 RepID=A0A2W1BKD7_HELAM) HSP 1 Score: 57.8 bits (138), Expect = 1.250e-5 Identity = 73/300 (24.33%), Postives = 116/300 (38.67%), Query Frame = 1
Query: 19 AWRILVDSYSATTRGANLQRMKALTNRRVKPGSNPIHTLSEMADDARDLRANGTDISDEIVCLLFLQVLPEEYDVFRQIIEREKEPLTIDGLMGELRARFDLSRKVKSRSSDTALVASGSRREKSKRDGAKHKVMGKKQSSSRGYNSAGSAATSEKEGDKVSCSICKETGHKWFKCSQ-RIXXXXXXXXXXXXXCPKMKKEDANLAISDQTWIVDSAATRHMAPNP---------VSMTNYRECDGVVRVANGVALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQFTR 888
AW L ++ + M AL + ++ S+ ++ + A+ L+ T D++V ++ L+ LPEEY R +E LT + + +L SR+ S S+D+AL + S+ KR G DK+ C C + GHK C + RI + + W +DS A+RHM+ N V M N VR AN + G GDI++S + L + +V ++P L NLLS+ R
Sbjct: 81 AWDSLAKAFEDKGVNRRITLMNALLDEKLDNHSSMHQYVAAVMSLAQKLKDIATGFDDDLVAVVLLRGLPEEYRPMRMALEHSGMKLTSENVRQKLLQED--SRQGTSSSADSALAVNKSK----KRIG---------------------------NNDKLKCFKCGKKGHKKPDCPEGRIAGATSKSKDVV----SLSSFSTGNSFDPSEWYIDSGASRHMSFNKHWFQNLVVNVEMNN-------VRCANDDKMECAGQGDIMVSMKGCM----LAVRDVMYIPSLRVNLLSVSSNPR 332
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Match: A0A6A1VKW1_9ROSI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1VKW1_9ROSI) HSP 1 Score: 56.2 bits (134), Expect = 3.980e-5 Identity = 41/134 (30.60%), Postives = 65/134 (48.51%), Query Frame = 1
Query: 493 DKVSCSICKETGHKWFKCSQRIXXXXXXXXXXXXXCPKMKKEDANL-AISDQTWIVDSAATRHMAPNPVSMTNYRE---CDGVVRVANGVALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQF 882
+++ C +C +TGH C R P +++ A+ D +W DSAAT HM + ++T + V V +G ALPI +G+ + D +L L N++ VPLL+ NLLS++QF
Sbjct: 276 ERLICQVCYKTGHTALHCYNRFNQSFQAPPP-----PSFTAHYSSVPAVCDSSWYPDSAATNHMTNDFSNLTIQPSEYFGEDQVWVGDGSALPIHHIGNTNLPTPHD----NLLLHNLSHVPLLTKNLLSVRQF 400
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Match: A0A0J7K4R5_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K4R5_LASNI) HSP 1 Score: 55.8 bits (133), Expect = 5.520e-5 Identity = 73/305 (23.93%), Postives = 112/305 (36.72%), Query Frame = 1
Query: 16 AAWRILVDSYSATTRGANLQRMKALTNRRVKPGSNPIHTLSEMADDARDLRANGTDISDEIVCLLFLQVLPEEYDVFRQIIEREKEPLTIDGLMGELRARFDLSRKVKSRSS------DTALVASGSRREKSKRDGAKHKVMGKKQSSSRGYNSAGSAATSEKEGDKVSCSICKETGHKWFKCSQRIXXXXXXXXXXXXXCPKMKKEDANLAISDQT-------WIVDSAATRHMAPN--PVSMTNYRECDGVVRVANGVALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQFT 885
AAW L + +T K L + + G +++ + A L G I D+++ ++ L LP +++ F IE E ID L +L K R+ + AL++ R+K KR NS A + V C C + GHK C + K DA AI T W +DS ATRHM + +M N E V A L G+I + + + +++L + FVP L +NL+S+ T
Sbjct: 83 AAWDDLKRVHESTGPVRKATLYKQLYRMKKESGITMNAYINDFTNKAEQLTEAGIKIPDDLLSIMLLSSLPNDFENFSIAIESRDEIPNIDSLKVKLLEEEARQNKRMGRNDSENGQKNDALLSHTHARDKQKR-----------------VNSTDKFAKQNQRKFTVKCFNCSKLGHKSADCRLKTKRGESN-----------SKSDAMTAIVCNTEVSKSNEWFLDSGATRHMCNDNRKFTMLNDTERSKVFTAAEH-CLDSSSTGEINLRVNNRGSKNNVKLEDTMFVPALRNNLMSVSTIT 358
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Match: A0A6A1WRJ5_9ROSI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1WRJ5_9ROSI) HSP 1 Score: 55.8 bits (133), Expect = 6.050e-5 Identity = 45/141 (31.91%), Postives = 62/141 (43.97%), Query Frame = 1
Query: 493 DKVSCSICKETGHKWFKCSQRIXXXXXXXXXXXXXCPKMKKEDANL----AISDQTWIVDSAATRHM-------APNPVSMTNYRECDGVVRVANGVALPIEGVGDILMSFQSDFGETDLQLLNVAFVPLLSHNLLSLKQF 882
D+ +C +C ++GH +C R P AN A D W DSAA+ HM + NP T + VRV +G ALPI G +S S L+L N+ VPLL+ NL+S++QF
Sbjct: 126 DRPTCQVCFKSGHTALQCYNRFNHAFQ--------APPPASFTANYSSIPAGPDSYWYPDSAASNHMTHDYTNLSHNPTEYTGEEQ----VRVGDGSALPIHHTGGSSLSTPS----RSLRLSNLLHVPLLTKNLISVRQF 250 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10221.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig10221.1.1 >prot_A-nodosum_M_contig10221.1.1 ID=prot_A-nodosum_M_contig10221.1.1|Name=mRNA_A-nodosum_M_contig10221.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=311bp VTSPTAAWRILVDSYSATTRGANLQRMKALTNRRVKPGSNPIHTLSEMADback to top mRNA from alignment at A-nodosum_M_contig10221:23..1072+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig10221.1.1 ID=mRNA_A-nodosum_M_contig10221.1.1|Name=mRNA_A-nodosum_M_contig10221.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1050bp|location=Sequence derived from alignment at A-nodosum_M_contig10221:23..1072+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig10221:23..1072+ >mRNA_A-nodosum_M_contig10221.1.1 ID=mRNA_A-nodosum_M_contig10221.1.1|Name=mRNA_A-nodosum_M_contig10221.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=933bp|location=Sequence derived from alignment at A-nodosum_M_contig10221:23..1072+ (Ascophyllum nodosum dioecious)back to top |