prot_A-nodosum_M_contig1022.5.4 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig1022.5.4
Unique Nameprot_A-nodosum_M_contig1022.5.4
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length348
Homology
BLAST of mRNA_A-nodosum_M_contig1022.5.4 vs. uniprot
Match: D7FZL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZL7_ECTSI)

HSP 1 Score: 304 bits (778), Expect = 4.100e-98
Identity = 196/370 (52.97%), Postives = 232/370 (62.70%), Query Frame = 0
Query:    1 MTLAALQKSKVGAAVSKLKKHANQKVSSSAKTLIKRWKKVAEASGVAGTRKPGKPEIGNIKASSVGSHGVHRVQQGKREGKGEGAKAFGGGRVGHDGGGGGVPTTQG-----------------------SSGAGPGKGTVAVGELANHMEEEEVGILSVLETSRLSFLAPLSVATAGFVEMEVDAIISADGAAPLRLKMRRKLMEALLSGTTAADRLSIAASRVATAVECAMDTNDPCAYKKDNYLEKARQLVFNLKKNQQLREDVREGIVTAERLVVMTSSELMAKDKREAMDRAVSERTEARMLDWAEKNQDKINKQCGITSQEGLFECGRCKSNKTTYTQKQTRSADEPMTTFVTCTNCKNRWKFC 347
            +TLA LQ+SKVGA VSKLKKHA+++VS SAK L+K+WK+VAEASGV G              S  GS G           KG GA                VP+  G                       ++   P KG  AVG+ A     E V +      S  S L            +EVD+I+S D  APLRLKMRRK+ + LL G++  +R+  A  RVA  VECAM+ N+P   KK +YL+KARQLVFNLKKN QLR+DVREG+V  +RLV MTS+ELMAKDKREAMD+AVSERTEARMLDW +KN+DKINKQCGI   +G+FECGRCKS KTTYTQKQTRSADEPMTTFVTC+NCKNRWKFC
Sbjct:   38 VTLAVLQESKVGATVSKLKKHADEEVSKSAKALVKKWKRVAEASGVQGXXXXXXXXXXXXXXSPPGSAG-----------KGSGASKQE------------VPSPSGXXXXXXXXXXXXXXXXXXXXXXATAATSPLKG--AVGKTATSSTSEAVPLSRQTSGSSTSELC---------TTLEVDSILSDDEPAPLRLKMRRKMFDTLLLGSSEDERIPTA--RVAKGVECAMNENNPYLSKKASYLDKARQLVFNLKKNDQLRQDVREGLVEPQRLVAMTSTELMAKDKREAMDKAVSERTEARMLDWYDKNEDKINKQCGIKETDGMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWKFC 371          
BLAST of mRNA_A-nodosum_M_contig1022.5.4 vs. uniprot
Match: A0A836CH25_9STRA (Transcription factor S-II-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH25_9STRA)

HSP 1 Score: 168 bits (425), Expect = 1.720e-45
Identity = 131/371 (35.31%), Postives = 179/371 (48.25%), Query Frame = 0
Query:    1 MTLAALQKSKVGAAVSKLKKHANQKVSSSAKTLIKRWKKVAEASGVAGTRKPGKPEIGNIKAS---------------------SVGSHGVHRVQQGKREGKGEGAKAFGGGRVGHDGGGGGVPTTQGSSGAGPGKGTVAVGELANHMEEEEVGILSVLETSRLSFLAPLSVATAGFVEMEVDAIISADGAAPLRLKMRRKLMEALL---SGTTAADRLSIAASRVATAVECAMDTNDPCAYKKDNYLEKARQLVFNLKKNQQLREDVREGIVTAERLVVMTSSELMAKDKREAMDRAVSERTEARMLDWAEKNQDKINKQCGITSQEGLFECGRCKSNKTTYTQKQTRSADEPMTTFVTCTNCKNRWKFC 347
            MT+  + +SK+G+AVSKL+KHA+ +V+  AK L+K WK++A+A+GV G+ +  +                              S  +    RVQ                            P  +            A+ +L     +  V   S          A    AT     M   A +  DG  P RLKMR+K +E  +      +AA    +AA   A  VE  ++   P            RQL+FNLKKN  LR DV  G V    L+ M+ +E+++  KR+AM+    +  +AR +DWAEKNQD+INKQCGIT+ EG+FECGRCKS KT Y QKQTRSADEPMTTFVTC +C  +W+FC
Sbjct:   40 MTVDIMAESKIGSAVSKLRKHADSRVAGQAKALVKVWKQLAQAAGVEGSNRAQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASAEQKLRVQ---------------------------APVEK------------ALKDLRRGSTDSFVSDASPRVGGAKPAKAQTPKATVSAAHM---ASLQEDGLLPNRLKMRQKFLEIFVLPEDDESAAPDGQLAAE-AACGVERELNAKFPFV----------RQLLFNLKKNAALRSDVVHGAVPCGALIAMSPTEMLSAAKRQAMEAQAQDLVDARRMDWAEKNQDEINKQCGITNMEGMFECGRCKSKKTHYYQKQTRSADEPMTTFVTCLHCGKKWRFC 357          
BLAST of mRNA_A-nodosum_M_contig1022.5.4 vs. uniprot
Match: A0A8K1CMA4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMA4_PYTOL)

HSP 1 Score: 148 bits (374), Expect = 1.740e-38
Identity = 84/150 (56.00%), Postives = 105/150 (70.00%), Query Frame = 0
Query:  200 SRVATAVECAM----DTNDPCAYKKDNYLEKARQLVFNLKKNQQLREDVREGIVTAERLVVMTSSELMAKDKREAMDRAVSERTEARMLDWAEKNQDKINKQCGITSQEGLFECGRCKSNKTTYTQKQTRSADEPMTTFVTCTNCKNRWK 345
            S VA A+E AM    + + P   KKD Y  K RQL FNLKKN QLRED+ + +V+AE+L+ MT  EL  ++KR  + +   +  +   LDWA+ N+DKINKQCGI + +GLF CGRCKS+KT+ TQKQTRSADEPMT FV C NC NRWK
Sbjct:  162 SDVAMAIEIAMAKQFNMSLPGENKKD-YTAKFRQLSFNLKKNAQLREDLLQDMVSAEQLIAMTPEELATEEKRNEIMKLRDDAFQRARLDWADANEDKINKQCGIENSKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVQCHNCGNRWK 310          
BLAST of mRNA_A-nodosum_M_contig1022.5.4 vs. uniprot
Match: K3WZ99_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZ99_GLOUD)

HSP 1 Score: 144 bits (364), Expect = 6.980e-37
Identity = 88/177 (49.72%), Postives = 113/177 (63.84%), Query Frame = 0
Query:  173 LRLKMRRKLMEALLSGTTAADRLSIAASRVATAVECAM----DTNDPCAYKKDNYLEKARQLVFNLKKNQQLREDVREGIVTAERLVVMTSSELMAKDKREAMDRAVSERTEARMLDWAEKNQDKINKQCGITSQEGLFECGRCKSNKTTYTQKQTRSADEPMTTFVTCTNCKNRWK 345
            +R  +R KL E +L  T   D        +ATA+E +M    +   P   KKD Y  K RQL FNLKKN  LRED+ +  V+AE+L+ M++ EL  ++KR  + +   +  +   LDWA+ N+DKINKQCGI + +GLF CGRCKS KT+ TQKQTRSADEPMT FV C NC NRWK
Sbjct:  155 VRATVRTKLKE-ILQATEGGDP-----EEIATAIEVSMARMFNMGYPGENKKD-YTAKFRQLSFNLKKNTPLREDLLQDAVSAEQLINMSADELATEEKRNEILKLRDDAFQRARLDWADANEDKINKQCGIENAKGLFTCGRCKSTKTSNTQKQTRSADEPMTVFVQCHNCGNRWK 324          
BLAST of mRNA_A-nodosum_M_contig1022.5.4 vs. uniprot
Match: A0A5D6XF33_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XF33_9STRA)

HSP 1 Score: 144 bits (363), Expect = 9.330e-37
Identity = 87/178 (48.88%), Postives = 111/178 (62.36%), Query Frame = 0
Query:  173 LRLKMRRKLMEALL--SGTTAADRLSIAASRVATAVECAMDTNDPCAYKKDN---YLEKARQLVFNLKKNQQLREDVREGIVTAERLVVMTSSELMAKDKREAMDRAVSERTEARMLDWAEKNQDKINKQCGITSQEGLFECGRCKSNKTTYTQKQTRSADEPMTTFVTCTNCKNRWK 345
            +R  +R KL E L    G +A D         A A+E AM       Y  +N   Y  K RQL FNLKKN  LRED+ +  V+AE+L+ M++ EL  ++KR  + +   +  +   LDWA+ N+DKINKQCGI + +GLF CGRCKS+KT+ TQKQTRSADEPMT FV C NC NRWK
Sbjct:  153 MRATVRTKLKETLAVSDGGSAED--------TAVAIEVAMARMFNMGYPGENKKEYTAKFRQLSFNLKKNAPLREDLLQDAVSAEQLIAMSADELATEEKRLEVQKLRDDAFQKARLDWADANEDKINKQCGIENAKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVQCHNCGNRWK 322          
BLAST of mRNA_A-nodosum_M_contig1022.5.4 vs. uniprot
Match: F0W9A3_9STRA (Transcription elongation factor putative n=2 Tax=Albugo TaxID=65356 RepID=F0W9A3_9STRA)

HSP 1 Score: 143 bits (361), Expect = 1.320e-36
Identity = 88/175 (50.29%), Postives = 111/175 (63.43%), Query Frame = 0
Query:  176 KMRRKLMEALLSGTTAADRLSIAASRVATAVECAM----DTNDPCAYKKDNYLEKARQLVFNLKKNQQLREDVREGIVTAERLVVMTSSELMAKDKREAMDRAVSERTEARMLDWAEKNQDKINKQCGIT-SQEGLFECGRCKSNKTTYTQKQTRSADEPMTTFVTCTNCKNRWK 345
            KMR  +   +      AD  +  A  VATA+E AM        P   KKD Y  K RQL FNLKKN +LRED+   +V+AE+L+ M+  EL   +KR  +++   +  +   LDWA+ N+DKINKQCGI  + +GLF CGRCKS+KT+ TQKQTRSADEPMT FV C NC NRWK
Sbjct:  135 KMRATVRTKMKENLELADADTSNAPDVATAIEIAMARMFSVGFPGENKKD-YTAKFRQLSFNLKKNARLREDLLLDVVSAEQLINMSPEELATDEKRHEIEKLRDDAFQRARLDWADANEDKINKQCGIEKNSKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVQCHNCGNRWK 308          
BLAST of mRNA_A-nodosum_M_contig1022.5.4 vs. uniprot
Match: A0A7S2XYD9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYD9_9STRA)

HSP 1 Score: 142 bits (358), Expect = 5.970e-36
Identity = 85/186 (45.70%), Postives = 104/186 (55.91%), Query Frame = 0
Query:  162 DAIISADGAAPLRLKMRRKLMEALLSGTTAADRLSIAASRVATAVECAMDTNDPCAYKKDNYLEKARQLVFNLKKNQQLREDVREGIVTAERLVVMTSSELMAKDKREAMDRAVSERTEARMLDWAEKNQDKINKQCGITSQEGLFECGRCKSNKTTYTQKQTRSADEPMTTFVTCTNCKNRWKFC 347
            D +   +G  P RLK+R ++         A+ +   AA+R    VE A+      + K   Y  K RQL FNLKKN +LR DV  G +  + LV ++S EL   D R    R   +   A   DW   N  K+N  CGI   EGLF+C RCKS KTT+TQKQTRSADEPMT FVTC NC NRWKFC
Sbjct:  149 DLVQGEEGLVPQRLKVRERMFTIFTQDVDASVQKGAAAARE---VEAAIHEIFNFSQKTKEYSAKVRQLNFNLKKNSKLRADVVNGSLAPDLLVQLSSDELATDDLRNERARIREDAINASRSDWDAANDQKLNAMCGIKQMEGLFQCFRCKSKKTTHTQKQTRSADEPMTVFVTCLNCGNRWKFC 331          
BLAST of mRNA_A-nodosum_M_contig1022.5.4 vs. uniprot
Match: A0A7S1ZLW0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZLW0_TRICV)

HSP 1 Score: 134 bits (338), Expect = 5.360e-34
Identity = 72/128 (56.25%), Postives = 88/128 (68.75%), Query Frame = 0
Query:  221 DNYLEKARQLVFNLKKNQQLREDVREGIVTAERLVVMTSSELMAKDKREAMDRAVSERTEARMLDWAEKNQDKINKQCGITS---QEGLFECGRCKSNKTTYTQKQTRSADEPMTTFVTCTNCKNRWK 345
            D+Y EKAR LVFNLKKN  LRE +  G+V+ +RL  M   EL++ DK  A  + V +  ++R LDW + N+ +IN+QCGI     +  LF CGRCKS KTT TQKQTRSADEPMT FV C NC NRWK
Sbjct:  111 DSYKEKARSLVFNLKKNGPLREQILLGVVSGDRLCSMKPDELLSADKARARAKMVGDLQDSRRLDWEQANEARINEQCGIKGDLLKASLFTCGRCKSIKTTSTQKQTRSADEPMTVFVLCLNCGNRWK 238          
BLAST of mRNA_A-nodosum_M_contig1022.5.4 vs. uniprot
Match: A0A7R9WI09_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WI09_9STRA)

HSP 1 Score: 136 bits (342), Expect = 5.730e-34
Identity = 75/129 (58.14%), Postives = 87/129 (67.44%), Query Frame = 0
Query:  221 DNYLEKARQLVFNLKKNQQLREDVREGIVTAERLVVMTSSELMAKDKREAMDRAVSERTEARMLDWAEKNQDKINKQCGITSQ---EGLFECGRCKSNKTTYTQKQTRSADEPMTTFVTCTNCKNRWKF 346
            +NY +KAR LVFNLKKN  +R+ V  G +  E LV M S EL   +K  A  + VS+  ++R LDW   N+DKINKQCGI  +     LF CGRCKS KTT TQKQTRSADEPMT FV C NC NRWKF
Sbjct:  167 NNYKDKARSLVFNLKKNASVRDQVLLGRIGPEDLVKMRSEELATSEKAAARAKLVSDLQDSRRLDWETANEDKINKQCGIKGELLKASLFTCGRCKSIKTTSTQKQTRSADEPMTVFVLCLNCGNRWKF 295          
BLAST of mRNA_A-nodosum_M_contig1022.5.4 vs. uniprot
Match: A0A7S2MN26_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MN26_9STRA)

HSP 1 Score: 137 bits (345), Expect = 6.860e-34
Identity = 79/154 (51.30%), Postives = 101/154 (65.58%), Query Frame = 0
Query:  195 LSIAASRVATAVECAMDTNDPCAYKKDNYLEKARQLVFNLKKNQQLREDVREGIVTAERLVVMTSSELMAKDKREAMDRAVSERTEARMLDWAEKNQDKINKQCGITSQ---EGLFECGRCKSNKTTYTQKQTRSADEPMTTFVTCTNCKNRWK 345
            L+  +++ A AVE A+      A  K +Y +KAR L FNLKKN  LRE++  G  TA +LV M+  +L   +K +A + A S   ++R+LDW +KN+ KIN+ CGI  +     LF CGRCKS KTT TQKQTRSADEPMT FV CTNC NRWK
Sbjct:  198 LAAVSAQRAAAVELAIQNFSKGA--KASYTDKARTLFFNLKKNAPLRENILLGHTTAAQLVAMSPEQLATNEKAKARNEAASALNDSRLLDWEQKNESKINEMCGIKGELLKASLFTCGRCKSTKTTSTQKQTRSADEPMTVFVFCTNCGNRWK 349          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1022.5.4 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZL7_ECTSI4.100e-9852.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CH25_9STRA1.720e-4535.31Transcription factor S-II-domain-containing protei... [more]
A0A8K1CMA4_PYTOL1.740e-3856.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WZ99_GLOUD6.980e-3749.72Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6XF33_9STRA9.330e-3748.88Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
F0W9A3_9STRA1.320e-3650.29Transcription elongation factor putative n=2 Tax=A... [more]
A0A7S2XYD9_9STRA5.970e-3645.70Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1ZLW0_TRICV5.360e-3456.25Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7R9WI09_9STRA5.730e-3458.14Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2MN26_9STRA6.860e-3451.30Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003618Transcription elongation factor S-II, central domainSMARTSM00510mid_6coord: 171..274
e-value: 8.7E-4
score: 26.2
IPR003618Transcription elongation factor S-II, central domainPFAMPF07500TFIIS_Mcoord: 172..277
e-value: 5.6E-15
score: 55.8
IPR003618Transcription elongation factor S-II, central domainPROSITEPS51321TFIIS_CENTRALcoord: 173..290
score: 15.017514
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 307..346
e-value: 9.5E-20
score: 81.6
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 307..345
e-value: 1.6E-18
score: 66.3
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 305..345
score: 14.365801
IPR035100Transcription elongation factor, IIS-typePIRSFPIRSF006704TFIIScoord: 1..347
e-value: 4.7E-45
score: 152.3
IPR036575Transcription elongation factor S-II, central domain superfamilyGENE3D1.10.472.30coord: 158..265
e-value: 4.7E-15
score: 57.8
IPR036575Transcription elongation factor S-II, central domain superfamilySUPERFAMILY46942Elongation factor TFIIS domain 2coord: 172..265
NoneNo IPR availableGENE3D2.20.25.10coord: 301..347
e-value: 4.5E-21
score: 76.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..108
NoneNo IPR availablePANTHERPTHR11477:SF0IP08861P-RELATEDcoord: 11..347
NoneNo IPR availablePANTHERPTHR11477TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEINcoord: 11..347
NoneNo IPR availableCDDcd13749Zn-ribbon_TFIIScoord: 302..346
e-value: 9.91705E-27
score: 98.0617
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 302..345
IPR035441TFIIS/LEDGF domain superfamilyGENE3D1.20.930.10Conserved domain common to transcription factors TFIIS, elongin A, CRSP70coord: 1..52
e-value: 6.4E-11
score: 43.8
IPR035441TFIIS/LEDGF domain superfamilySUPERFAMILY47676Conserved domain common to transcription factors TFIIS, elongin A, CRSP70coord: 1..45
IPR017923Transcription factor IIS, N-terminalPFAMPF08711Med26coord: 2..39
e-value: 2.7E-7
score: 30.6
IPR017923Transcription factor IIS, N-terminalPROSITEPS51319TFIIS_Ncoord: 1..44
score: 15.884472

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1022contigA-nodosum_M_contig1022:66943..71639 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1022.5.4mRNA_A-nodosum_M_contig1022.5.4Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig1022 66892..72642 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig1022.5.4 ID=prot_A-nodosum_M_contig1022.5.4|Name=mRNA_A-nodosum_M_contig1022.5.4|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=348bp
MTLAALQKSKVGAAVSKLKKHANQKVSSSAKTLIKRWKKVAEASGVAGTR
KPGKPEIGNIKASSVGSHGVHRVQQGKREGKGEGAKAFGGGRVGHDGGGG
GVPTTQGSSGAGPGKGTVAVGELANHMEEEEVGILSVLETSRLSFLAPLS
VATAGFVEMEVDAIISADGAAPLRLKMRRKLMEALLSGTTAADRLSIAAS
RVATAVECAMDTNDPCAYKKDNYLEKARQLVFNLKKNQQLREDVREGIVT
AERLVVMTSSELMAKDKREAMDRAVSERTEARMLDWAEKNQDKINKQCGI
TSQEGLFECGRCKSNKTTYTQKQTRSADEPMTTFVTCTNCKNRWKFC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003618TFIIS_cen_dom
IPR001222Znf_TFIIS
IPR035100TF_IIS-typ
IPR036575TFIIS_cen_dom_sf
IPR035441TFIIS/LEDGF_dom_sf
IPR017923TFIIS_N