mRNA_A-nodosum_M_contig1022.5.4 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1022.5.4
Unique NamemRNA_A-nodosum_M_contig1022.5.4
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1022.5.4 vs. uniprot
Match: D7FZL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZL7_ECTSI)

HSP 1 Score: 321 bits (822), Expect = 4.300e-100
Identity = 205/387 (52.97%), Postives = 245/387 (63.31%), Query Frame = 1
Query:    1 KDSERIGEVLASLGALDMTLAALQKSKVGAAVSKLKKHANQKVSSSAKTLIKRWKKVAEASGVAGTRKPGKPEIGNIKASSVGSHGVHRVQQGKREGKGEGAKAFGGGRVGHDGGGGGVPTTQG-----------------------SSGAGPGKGTVAVGELANHMEEEEVGILSVLETSRLSFLAPLSVATAGFVEMEVDAIISADGAAPLRLKMRRKLMEALLSGTTAADRLSIAASRVATAVECAMDTNDPCAYKKDNYLEKARQLVFNLKKNQQLREDVREGIVTAERLVVMTSSELMAKDKREAMDRAVSERTEARMLDWAEKNQDKINKQCGITSQEGLFECGRCKSNKTTYTQKQTRSADEPMTTFVTCTNCKNRWKFC 1092
            +D ERI +VL SLG +++TLA LQ+SKVGA VSKLKKHA+++VS SAK L+K+WK+VAEASGV G              S  GS G           KG GA                VP+  G                       ++   P KG  AVG+ A     E V +      S  S L            +EVD+I+S D  APLRLKMRRK+ + LL G++  +R+  A  RVA  VECAM+ N+P   KK +YL+KARQLVFNLKKN QLR+DVREG+V  +RLV MTS+ELMAKDKREAMD+AVSERTEARMLDW +KN+DKINKQCGI   +G+FECGRCKS KTTYTQKQTRSADEPMTTFVTC+NCKNRWKFC
Sbjct:   21 EDVERIADVLGSLGKVEVTLAVLQESKVGATVSKLKKHADEEVSKSAKALVKKWKRVAEASGVQGXXXXXXXXXXXXXXSPPGSAG-----------KGSGASKQE------------VPSPSGXXXXXXXXXXXXXXXXXXXXXXATAATSPLKG--AVGKTATSSTSEAVPLSRQTSGSSTSELC---------TTLEVDSILSDDEPAPLRLKMRRKMFDTLLLGSSEDERIPTA--RVAKGVECAMNENNPYLSKKASYLDKARQLVFNLKKNDQLRQDVREGLVEPQRLVAMTSTELMAKDKREAMDKAVSERTEARMLDWYDKNEDKINKQCGIKETDGMFECGRCKSTKTTYTQKQTRSADEPMTTFVTCSNCKNRWKFC 371          
BLAST of mRNA_A-nodosum_M_contig1022.5.4 vs. uniprot
Match: A0A836CH25_9STRA (Transcription factor S-II-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH25_9STRA)

HSP 1 Score: 179 bits (453), Expect = 1.290e-46
Identity = 136/387 (35.14%), Postives = 190/387 (49.10%), Query Frame = 1
Query:    4 DSERIGEVLASLGALDMTLAALQKSKVGAAVSKLKKHANQKVSSSAKTLIKRWKKVAEASGVAGTRKPGKPEIGNIKAS---------------------SVGSHGVHRVQQGKREGKGEGAKAFGGGRVGHDGGGGGVPTTQGSSGAGPGKGTVAVGELANHMEEEEVGILSVLETSRLSFLAPLSVATAGFVEMEVDAIISADGAAPLRLKMRRKLMEALL---SGTTAADRLSIAASRVATAVECAMDTNDPCAYKKDNYLEKARQLVFNLKKNQQLREDVREGIVTAERLVVMTSSELMAKDKREAMDRAVSERTEARMLDWAEKNQDKINKQCGITSQEGLFECGRCKSNKTTYTQKQTRSADEPMTTFVTCTNCKNRWKFC 1092
            D+ R+ ++L+ L  +DMT+  + +SK+G+AVSKL+KHA+ +V+  AK L+K WK++A+A+GV G+ +  +                              S  +    RVQ                            P  +            A+ +L     +  V   S          A    AT     M   A +  DG  P RLKMR+K +E  +      +AA    +AA   A  VE  ++   P            RQL+FNLKKN  LR DV  G V    L+ M+ +E+++  KR+AM+    +  +AR +DWAEKNQD+INKQCGIT+ EG+FECGRCKS KT Y QKQTRSADEPMTTFVTC +C  +W+FC
Sbjct:   24 DAPRVCDILSQLEKVDMTVDIMAESKIGSAVSKLRKHADSRVAGQAKALVKVWKQLAQAAGVEGSNRAQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSASAEQKLRVQ---------------------------APVEK------------ALKDLRRGSTDSFVSDASPRVGGAKPAKAQTPKATVSAAHM---ASLQEDGLLPNRLKMRQKFLEIFVLPEDDESAAPDGQLAAE-AACGVERELNAKFPFV----------RQLLFNLKKNAALRSDVVHGAVPCGALIAMSPTEMLSAAKRQAMEAQAQDLVDARRMDWAEKNQDEINKQCGITNMEGMFECGRCKSKKTHYYQKQTRSADEPMTTFVTCLHCGKKWRFC 357          
BLAST of mRNA_A-nodosum_M_contig1022.5.4 vs. uniprot
Match: K3WZ99_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZ99_GLOUD)

HSP 1 Score: 150 bits (380), Expect = 7.500e-37
Identity = 127/368 (34.51%), Postives = 178/368 (48.37%), Query Frame = 1
Query:    4 DSERIGEVLASLGALD---MTLAALQKSKVGAAVSKLKKHANQKVSSSAKTLIKRWKKVAEASGVAGTRKPGKPEIGNIKASSVGSHGVHRVQQGKREGKGEGAKAFGGGRVGHDGGGGGVPTTQGSSGAGPGKGTVAVGELANHMEEEEVGILSVLETSRLSFLAPLSVATAGFVEMEVDAIISADGAAPLRLKMRRKLMEALLSGTTAADRLSIAASRVATAVECAM----DTNDPCAYKKDNYLEKARQLVFNLKKNQQLREDVREGIVTAERLVVMTSSELMAKDKREAMDRAVSERTEARMLDWAEKNQDKINKQCGITSQEGLFECGRCKSNKTTYTQKQTRSADEPMTTFVTCTNCKNRWK 1086
            DS   GEVL  L  L+   +T   L+++K+G  V K++KH N+K+++ AK L+K WK +A +          KP   +    ++             E K  G  +F G R+                   P K   +    +N  +                  A    +   F+   +D +         R  +R KL E +L  T   D        +ATA+E +M    +   P   KKD Y  K RQL FNLKKN  LRED+ +  V+AE+L+ M++ EL  ++KR  + +   +  +   LDWA+ N+DKINKQCGI + +GLF CGRCKS KT+ TQKQTRSADEPMT FV C NC NRWK
Sbjct:   18 DSTDAGEVLDVLRTLEKTTITYGILKETKLGHTVGKMRKHENEKIANQAKLLVKSWKSMALSP---------KPATASSSTPTL-------------ERKSSGTSSFDGDRI-------------------PKKSVNSTSSSSNGAKPAAATPXXXXXXXXXXXXA----SRGPFIPAGLDKV---------RATVRTKLKE-ILQATEGGDP-----EEIATAIEVSMARMFNMGYPGENKKD-YTAKFRQLSFNLKKNTPLREDLLQDAVSAEQLINMSADELATEEKRNEILKLRDDAFQRARLDWADANEDKINKQCGIENAKGLFTCGRCKSTKTSNTQKQTRSADEPMTVFVQCHNCGNRWK 324          
BLAST of mRNA_A-nodosum_M_contig1022.5.4 vs. uniprot
Match: A0A024TW44_9STRA (Transcription elongation factor S-II n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TW44_9STRA)

HSP 1 Score: 149 bits (377), Expect = 2.330e-36
Identity = 124/361 (34.35%), Postives = 169/361 (46.81%), Query Frame = 1
Query:    4 DSERIGEVLASLGALDMTLAALQKSKVGAAVSKLKKHANQKVSSSAKTLIKRWKKVAEASGVAGTRKPGKPEIGNIKASSVGSHGVHRVQQGKREGKGEGAKAFGGGRVGHDGGGGGVPTTQGSSGAGPGKGTVAVGELANHMEEEEVGILSVLETSRLSFLAPLSVATAGFVEMEVDAIISADGAAPLRLKMRRKLMEALLSGTTAADRLSIAASRVATAVECAMDTNDPCAYKKDNYLEKARQLVFNLKKNQQLREDVREGIVTAERLVVMTSSELMAKDKREAMDRAVSERTEARMLDWAEKNQDKINKQCGITSQEGLFECGRCKSNKTTYTQKQTRSADEPMTTFVTCTNCKNRWK 1086
            D   + + +  L  +DMTLA L+ +K+G  ++KL+KH  + VSS AK L+K+WK +A            +P   +IK  +           GK E    G K                PTT   S          + + A   E++E      +    +  LA    +  G    E       D  A +R K++  L  A          L   A  VA A E  MD+       K +Y +K RQL FNLKKN  LR ++    VT ++L+ MT  E+   ++R+ MD+   +  +   LDWAE N DKINK CGI    GLF CGRCKS KT+ TQ+QTRSADEPMT FV C +C  RWK
Sbjct:   21 DQNGVADAMDHLNKVDMTLAILKDTKIGQTIAKLRKHDAELVSSKAKILLKKWKTLAS-----------RPSDSDIKVEA----------DGKSEPGTPGPKVS--------------PTTSDGS----------LKDEAKWPEKDETAPAITIRRPSMHALA----SQRGSTPFEFIPKGLQDVRATVRRKLKEVLCLAEAPDLVGEAELVAVAIEVAMAREYNMDSARNTNEGKKHYTDKYRQLSFNLKKNVNLRLNLLTNKVTGDQLIKMTPDEMATDERRKEMDQLRDDAFQRARLDWAEANADKINKACGIKDARGLFTCGRCKSTKTSNTQQQTRSADEPMTVFVICHDCGKRWK 332          
BLAST of mRNA_A-nodosum_M_contig1022.5.4 vs. uniprot
Match: A0A8K1CMA4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMA4_PYTOL)

HSP 1 Score: 148 bits (373), Expect = 4.840e-36
Identity = 84/150 (56.00%), Postives = 105/150 (70.00%), Query Frame = 1
Query:  649 SRVATAVECAM----DTNDPCAYKKDNYLEKARQLVFNLKKNQQLREDVREGIVTAERLVVMTSSELMAKDKREAMDRAVSERTEARMLDWAEKNQDKINKQCGITSQEGLFECGRCKSNKTTYTQKQTRSADEPMTTFVTCTNCKNRWK 1086
            S VA A+E AM    + + P   KKD Y  K RQL FNLKKN QLRED+ + +V+AE+L+ MT  EL  ++KR  + +   +  +   LDWA+ N+DKINKQCGI + +GLF CGRCKS+KT+ TQKQTRSADEPMT FV C NC NRWK
Sbjct:  162 SDVAMAIEIAMAKQFNMSLPGENKKD-YTAKFRQLSFNLKKNAQLREDLLQDMVSAEQLIAMTPEELATEEKRNEIMKLRDDAFQRARLDWADANEDKINKQCGIENSKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVQCHNCGNRWK 310          
BLAST of mRNA_A-nodosum_M_contig1022.5.4 vs. uniprot
Match: A0A7S2XYD9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYD9_9STRA)

HSP 1 Score: 147 bits (371), Expect = 1.460e-35
Identity = 116/364 (31.87%), Postives = 161/364 (44.23%), Query Frame = 1
Query:    7 SERIGEVLASLGALDMTLAALQKSKVGAAVSKLKKHANQKVSSSAKTLIKRWKKVAEA--SGVAGTRKPGKPEIGNIKASSVGSHGVHRVQQGKREGKGEGAKAFGGGRVGHDGGGGGVPTTQGSSGAGPGKGTVAVGELANHMEEEEVGILSVLETSRLSFLAPLSVATAGFVEMEVDAIISADGAAPLRLKMRRKLMEALLSGTTAADRLSIAASRVATAVECAMDTNDPCAYKKDNYLEKARQLVFNLKKNQQLREDVREGIVTAERLVVMTSSELMAKDKREAMDRAVSERTEARMLDWAEKNQDKINKQCGITSQEGLFECGRCKSNKTTYTQKQTRSADEPMTTFVTCTNCKNRWKFC 1092
            +ERI +++  L  + +T+  L+ +KVG  + KL+KH++Q V+ +AK L+K+WK++AE   +G A    P         ++     GV                                  + G                     ++E G+                           D +   +G  P RLK+R ++         A+ +   AA+R    VE A+      + K   Y  K RQL FNLKKN +LR DV  G +  + LV ++S EL   D R    R   +   A   DW   N  K+N  CGI   EGLF+C RCKS KTT+TQKQTRSADEPMT FVTC NC NRWKFC
Sbjct:   30 AERIIDLIGRLNEVPVTVDDLRDTKVGLTIGKLRKHSDQSVAGAAKKLLKKWKRMAEGEMTGEAAANTPAPAPSPPAASNGASEEGV---------------------------------ASNGGXXXXXXXXXXDXXXXDKKKADDEGGV--------------------------PDLVQGEEGLVPQRLKVRERMFTIFTQDVDASVQKGAAAARE---VEAAIHEIFNFSQKTKEYSAKVRQLNFNLKKNSKLRADVVNGSLAPDLLVQLSSDELATDDLRNERARIREDAINASRSDWDAANDQKLNAMCGIKQMEGLFQCFRCKSKKTTHTQKQTRSADEPMTVFVTCLNCGNRWKFC 331          
BLAST of mRNA_A-nodosum_M_contig1022.5.4 vs. uniprot
Match: A0A5D6XF33_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XF33_9STRA)

HSP 1 Score: 145 bits (367), Expect = 4.230e-35
Identity = 122/358 (34.08%), Postives = 171/358 (47.77%), Query Frame = 1
Query:   22 EVLASLGALDMTLAALQKSKVGAAVSKLKKHANQKVSSSAKTLIKRWKKVAEASGVAGTRKPGKPEIGNIKASSVGSHGVHRVQQGKREGKGEGAKAFGGGRVGHDGGGGGVPTTQGSSGAGPGKGTVAVGELANHMEEEEVGILSVLETSRLSFLAPLSVATAGFVEMEVDAIISADGAAPLRLKMRRKLMEALLSGTTAADRLSIAASRVATAVECAMDTNDPCAYKKDN---YLEKARQLVFNLKKNQQLREDVREGIVTAERLVVMTSSELMAKDKREAMDRAVSERTEARMLDWAEKNQDKINKQCGITSQEGLFECGRCKSNKTTYTQKQTRSADEPMTTFVTCTNCKNRWK 1086
            +VL  L    +T A L+++K+G  V K++KHAN+K+++ AK L+K WK +A +   + +   G   I   K+SSV S                                                             +  V   +    S+  F+ P      GF +M           A +R K++  L  A+  G +A D         A A+E AM       Y  +N   Y  K RQL FNLKKN  LRED+ +  V+AE+L+ M++ EL  ++KR  + +   +  +   LDWA+ N+DKINKQCGI + +GLF CGRCKS+KT+ TQKQTRSADEPMT FV C NC NRWK
Sbjct:   27 DVLRKLETSTITYAILKETKLGHTVGKMRKHANEKLANQAKVLVKSWKNMALSPKPSASASEGGERIPK-KSSSVSSTPPAXXXXXXXXXX-----------------------------------XXXXXXXVKPQPQPVVAAPAPRARSKGPFIPP------GFDKMR----------ATVRTKLKETL--AVSDGGSAED--------TAVAIEVAMARMFNMGYPGENKKEYTAKFRQLSFNLKKNAPLREDLLQDAVSAEQLIAMSADELATEEKRLEVQKLRDDAFQKARLDWADANEDKINKQCGIENAKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVQCHNCGNRWK 322          
BLAST of mRNA_A-nodosum_M_contig1022.5.4 vs. uniprot
Match: A0A7S2MN26_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MN26_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.460e-34
Identity = 124/373 (33.24%), Postives = 165/373 (44.24%), Query Frame = 1
Query:    4 DSERIGEVLASLGALDMTLAALQKSKVGAAVSKLKKHANQKVSSSAKTLIKRWKKVAEASGVAGTRKPGKPEIGNIKASSVGSHGVHRVQQGKREGKGEGAKAFGGGRVGHDGGGGGVPTTQGSSGAGPGKGTVAVGELANHMEEEEVGILSVLETSRLSFLAPLSVATAGFVEMEVDAIISADGAAPLRLKMRRKLMEALLSGTTAA---------DRLSIAASRVATAVECAMDTNDPCAYKKDNYLEKARQLVFNLKKNQQLREDVREGIVTAERLVVMTSSELMAKDKREAMDRAVSERTEARMLDWAEKNQDKINKQCGITSQ---EGLFECGRCKSNKTTYTQKQTRSADEPMTTFVTCTNCKNRWK 1086
            D ER  ++L  L  L MTL  L  + +G  VSKLK H +  V+S AK L+K+WKK+A+  GV G              +SV S                                                         N  E+      S+            S   +G      +A    D   PLR  +  KL    ++   +            L+  +++ A AVE A+      A  K +Y +KAR L FNLKKN  LRE++  G  TA +LV M+  +L   +K +A + A S   ++R+LDW +KN+ KIN+ CGI  +     LF CGRCKS KTT TQKQTRSADEPMT FV CTNC NRWK
Sbjct:   49 DKERCMDILQRLEELPMTLQLLSATLIGTVVSKLKSHKDGAVASKAKALVKKWKKLAKEGGVGG-------------GASVSS---------------------------------------------------------NKSEKRPSLKKSLSXXXXXXXXXXKSTTGSGAPAGAPEAPKEWDKLPPLRKNICTKLHNIFMTSPASVLDSAPELKDQSLAAVSAQRAAAVELAIQNFSKGA--KASYTDKARTLFFNLKKNAPLRENILLGHTTAAQLVAMSPEQLATNEKAKARNEAASALNDSRLLDWEQKNESKINEMCGIKGELLKASLFTCGRCKSTKTTSTQKQTRSADEPMTVFVFCTNCGNRWK 349          
BLAST of mRNA_A-nodosum_M_contig1022.5.4 vs. uniprot
Match: F0W9A3_9STRA (Transcription elongation factor putative n=2 Tax=Albugo TaxID=65356 RepID=F0W9A3_9STRA)

HSP 1 Score: 143 bits (360), Expect = 2.720e-34
Identity = 88/175 (50.29%), Postives = 111/175 (63.43%), Query Frame = 1
Query:  577 KMRRKLMEALLSGTTAADRLSIAASRVATAVECAM----DTNDPCAYKKDNYLEKARQLVFNLKKNQQLREDVREGIVTAERLVVMTSSELMAKDKREAMDRAVSERTEARMLDWAEKNQDKINKQCGIT-SQEGLFECGRCKSNKTTYTQKQTRSADEPMTTFVTCTNCKNRWK 1086
            KMR  +   +      AD  +  A  VATA+E AM        P   KKD Y  K RQL FNLKKN +LRED+   +V+AE+L+ M+  EL   +KR  +++   +  +   LDWA+ N+DKINKQCGI  + +GLF CGRCKS+KT+ TQKQTRSADEPMT FV C NC NRWK
Sbjct:  135 KMRATVRTKMKENLELADADTSNAPDVATAIEIAMARMFSVGFPGENKKD-YTAKFRQLSFNLKKNARLREDLLLDVVSAEQLINMSPEELATDEKRHEIEKLRDDAFQRARLDWADANEDKINKQCGIEKNSKGLFTCGRCKSSKTSNTQKQTRSADEPMTVFVQCHNCGNRWK 308          
BLAST of mRNA_A-nodosum_M_contig1022.5.4 vs. uniprot
Match: W4G1Y0_9STRA (Transcription elongation factor S-II n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G1Y0_9STRA)

HSP 1 Score: 143 bits (360), Expect = 6.190e-34
Identity = 121/378 (32.01%), Postives = 178/378 (47.09%), Query Frame = 1
Query:    4 DSERIGEVLASLGALDMTLAALQKSKVGAAVSKLKKHANQKVSSSAKTLIKRWKKVAEASGVAGTRKPGKPEIGNIKAS-SVGSH-GVHRVQQGKREGKGEGAKAFGGGRVGHDGGGGGVPTTQGSSGAGPGKGTVAVGELANH-----MEEEEVGILSVLETSRLSFLAPLSVATAGFVEMEVDAIISADGAAPLRLKMRRKLMEALLSGTTAADRLSIAASRVATAVECAM----------DTNDPCAYKKDNYLEKARQLVFNLKKNQQLREDVREGIVTAERLVVMTSSELMAKDKREAMDRAVSERTEARMLDWAEKNQDKINKQCGITSQEGLFECGRCKSNKTTYTQKQTRSADEPMTTFVTCTNCKNRWK 1086
            D   + + +  L  +DMTLA L+ +K+G  ++KL+KH  + VSS AK L+K+WK +A            +P   +IK    V S  G  +V                             PT    S     K +V V  + +       ++     +++      +F +  +     F+           G   +R  +RRKL E L    T    L   A  VA  +E AM          +TN+     K +Y +K RQ+ FNLKKN+ LR+++    ++ ++L+ M+  E+  +++R+ MD+   +  +   LDWAE N DKINK CGI    GLF CGRCKS KT+ TQ+QTRSADEPMT FV C NC  RWK
Sbjct:   21 DQNGVADAMEHLNTVDMTLAILKDTKIGQTIAKLRKHDAEVVSSKAKHLLKKWKTLAS-----------RPSDSDIKVDPDVKSEMGTPKVS----------------------------PTASDLSAKDESKWSVKVETIKDEPKRPVKDDPAATPITIRRAPVHAFSSQRNSTPFEFIPK---------GLQDVRATVRRKLKEVLSVAET--PELVAEAEFVAVGIEVAMAREFKMDSARNTNEG----KKHYTDKYRQVSFNLKKNESLRQNLLTHHISGDQLIKMSPDEMATEERRKEMDQLRDDAFQRARLDWAEANADKINKACGIKDTRGLFTCGRCKSTKTSNTQQQTRSADEPMTVFVICHNCGKRWK 344          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1022.5.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZL7_ECTSI4.300e-10052.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CH25_9STRA1.290e-4635.14Transcription factor S-II-domain-containing protei... [more]
K3WZ99_GLOUD7.500e-3734.51Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A024TW44_9STRA2.330e-3634.35Transcription elongation factor S-II n=1 Tax=Aphan... [more]
A0A8K1CMA4_PYTOL4.840e-3656.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2XYD9_9STRA1.460e-3531.87Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A5D6XF33_9STRA4.230e-3534.08Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S2MN26_9STRA1.460e-3433.24Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
F0W9A3_9STRA2.720e-3450.29Transcription elongation factor putative n=2 Tax=A... [more]
W4G1Y0_9STRA6.190e-3432.01Transcription elongation factor S-II n=3 Tax=Aphan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1022contigA-nodosum_M_contig1022:66892..72642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FZL7
PFAMsMed26,TFIIS_C,TFIIS_M
Model size2098
Max annot lvl2759|Eukaryota
KEGG koko:K03145,ko:K03926
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0001012,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005730,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006354,GO:0006366,GO:0006368,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016591,GO:0018130,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0050896,GO:0051716,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
Exons9
Evalue6.73e-99
EggNOG OGsCOG1594@1|root,KOG1105@2759|Eukaryota
Ec32 ortholog descriptionTranscription elongation factor TFIIS/CRSP70
Ec32 orthologEc-25_003580.1
Descriptiontranscription, DNA-templated
Cds size1044
COG categoryK
BRITEko00000,ko03021
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1022.5.4prot_A-nodosum_M_contig1022.5.4Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1022 66943..71639 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866388.2657487-UTR-A-nodosum_M_contig1022:66891..669421680866388.2657487-UTR-A-nodosum_M_contig1022:66891..66942Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1022 66892..66942 +
1680866388.4278607-UTR-A-nodosum_M_contig1022:71639..726421680866388.4278607-UTR-A-nodosum_M_contig1022:71639..72642Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1022 71640..72642 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866388.3361802-CDS-A-nodosum_M_contig1022:66942..671261680866388.3361802-CDS-A-nodosum_M_contig1022:66942..67126Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1022 66943..67126 +
1680866388.3484209-CDS-A-nodosum_M_contig1022:67791..679731680866388.3484209-CDS-A-nodosum_M_contig1022:67791..67973Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1022 67792..67973 +
1680866388.3618612-CDS-A-nodosum_M_contig1022:68828..688891680866388.3618612-CDS-A-nodosum_M_contig1022:68828..68889Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1022 68829..68889 +
1680866388.3708155-CDS-A-nodosum_M_contig1022:68908..689401680866388.3708155-CDS-A-nodosum_M_contig1022:68908..68940Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1022 68909..68940 +
1680866388.3793435-CDS-A-nodosum_M_contig1022:69308..694411680866388.3793435-CDS-A-nodosum_M_contig1022:69308..69441Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1022 69309..69441 +
1680866388.3890917-CDS-A-nodosum_M_contig1022:70133..702631680866388.3890917-CDS-A-nodosum_M_contig1022:70133..70263Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1022 70134..70263 +
1680866388.3968878-CDS-A-nodosum_M_contig1022:70696..708221680866388.3968878-CDS-A-nodosum_M_contig1022:70696..70822Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1022 70697..70822 +
1680866388.4048107-CDS-A-nodosum_M_contig1022:71266..713301680866388.4048107-CDS-A-nodosum_M_contig1022:71266..71330Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1022 71267..71330 +
1680866388.412897-CDS-A-nodosum_M_contig1022:71507..716391680866388.412897-CDS-A-nodosum_M_contig1022:71507..71639Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1022 71508..71639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1022.5.4

>prot_A-nodosum_M_contig1022.5.4 ID=prot_A-nodosum_M_contig1022.5.4|Name=mRNA_A-nodosum_M_contig1022.5.4|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=348bp
MTLAALQKSKVGAAVSKLKKHANQKVSSSAKTLIKRWKKVAEASGVAGTR
KPGKPEIGNIKASSVGSHGVHRVQQGKREGKGEGAKAFGGGRVGHDGGGG
GVPTTQGSSGAGPGKGTVAVGELANHMEEEEVGILSVLETSRLSFLAPLS
VATAGFVEMEVDAIISADGAAPLRLKMRRKLMEALLSGTTAADRLSIAAS
RVATAVECAMDTNDPCAYKKDNYLEKARQLVFNLKKNQQLREDVREGIVT
AERLVVMTSSELMAKDKREAMDRAVSERTEARMLDWAEKNQDKINKQCGI
TSQEGLFECGRCKSNKTTYTQKQTRSADEPMTTFVTCTNCKNRWKFC*
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mRNA from alignment at A-nodosum_M_contig1022:66892..72642+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1022.5.4 ID=mRNA_A-nodosum_M_contig1022.5.4|Name=mRNA_A-nodosum_M_contig1022.5.4|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5751bp|location=Sequence derived from alignment at A-nodosum_M_contig1022:66892..72642+ (Ascophyllum nodosum dioecious)
AAGGATTCGGAGCGCATCGGTGAAGTACTGGCATCCCTCGGGGCGCTAGA CATGACCTTGGCAGCCCTGCAAAAGAGCAAGGTAGGAGCAGCGGTCTCGA AACTTAAGAAACACGCCAATCAGAAGGTTTCCAGCAGTGCTAAGACTCTT ATCAAGAGGTGGAAAAAGGTGGCGGAGGCTTCGGGGGTAGCGGGGACGAG GAAGCCCGGAAAGCCAGAAATAGGCAATATAAAAGGTACGTAAAAAAGCG GTAGCGCTCAATATCTAAATCTATATCCTGCTTGCACTCTACACGGTAAG GTTTTTGTATTTCATTTAAAAAAAAAAAAAATCGGGATCCTTCCTTGTTA TGTTTATCACTTGCCTTATTAATTTCAATATCAAAAAGAACGAACGAATC AGGTTGGGGGAAGCGTGATACGGCCCGCTGTTTTATTAATAGGATTCTCG CCTTAAGTCGTGAACTTGGCGACGAAATTACTTGTAAACTATGAAGGAAA ATTGTTGATGGGGGGATTGTATACCCAAAAAAGACTGGAGCAGGCTTGGG TATGAAGAGATAACGATATCAACTTCAAAGGACCAAACAGCCAACGGCGA ACGGTTTCATTCTACAGTATTAGTATTAGTAATAAAGCATTAATAGTACC TGATACCTTCTAATTACAATTCGCATGGCGTCGCCCAACGCTCTCAACGA GGAGCGCTTTCGGATCCTTGTACCTTGTACCTCTACGGTGCCCTTTTTAC ACTACACTACAGTACAGTACAGTACGTCGCGGTGTCTTGAAAACGCAATT GGAGTGTGTTTTGATCATCTGGTGCTTCTAACTGATCGCAACCCCCCTCA TCGACCATCGCTTCCATCGACCATCGCTTCCACCGACCATCGACCAGGAG CATCTTCGGTGGGTTCACATGGCGTACATCGCGTACAACAGGGGAAGCGA GAGGGAAAAGGAGAAGGCGCTAAGGCGTTTGGTGGTGGTCGTGTTGGCCA TGATGGGGGTGGTGGTGGTGTTCCGACGACGCAGGGATCATCTGGAGCTG GGCCAGGAAAGGGAACAGTCGCAGTCGGGGAGGTATGAGCTTGTTACGTC AGGGCTGCAGGGCCGCACCCAAGTGTTATGTATGGTCATCACATTAGGCA GAGTATAGGTCAATAGGGTAAGGTTACCAATCCTGCTCGTGGTCAGATAA GCAGGGAACATGAATATTTCCCTGTCCCCGTTCGCGCCTGAAAATTTGGT CTCGCGAGACGGGTTCAGCCTGAGTATGGAGATGAGCAGGACGACGCGGG ACGGGACGGCCAAACCCGTCTCGCGAGACCAAAATCTCAGACGCGAACGG GGACAGGGAAATATTCATTTTCTCTGTTCAGCTGATCACAAGCAAGATTG GCAACCTTACACGGTAGATCCATACTCTGCTATAAGCGATGACGATACGT ACATACTTTTGTTCCGGTTTATTTCCTGCTTTTACTGCTGCTTTTTCAGA AGGAGGTGGAAATGGCGATATAGGTGTAGCATATCATCTCCGCGATCCTC TCGGGCTATGCAACACAAAGTAATTAACTCTAATATGTAGTAGTTACCCA GTACGAAGTACTCATATTATAGTATTAATATTAATAATATAATAATAGCA TTAATATGTTTAGCTCTAGTCTTGGTATGAAAAGCCGCCCTGAAGTGGCA TGTTTGAAATGTAGGCCATACTTGCATTTATAGTATATTATAGTATACCA TACCATAGTATAACTGGTATAGTATTGGACATAAAGACGTTGTTTTACGT CGAGAAGATAGAAGATAGTATTGGACATAAATATAGTATTGGATCCTTTG ACCAGTGATGGCACCTGATGTATTAATAATATAATAGCCTATGATATTGA TAGTCCCTTTGTCGGTGCATAGATTCTCATCCTCGAGTTGGCCAATCATA TGGAGGAGGAGGAAGTTGGAATACTGTCTGTACTTGAAACGTCTAGGCGT GATTTCCCCAGGGCAAGTGTCGTTCCTAGCTCCACTCTCCGTTGCAACTG TACTATAATATACTATTAATATGCTATTAATATACTTTTAGCATACTACA GTATTAATATACTACTGTATAGTATTAATATACTACTGTATAGTATTAAT ATATGGTATTCAGTACCGAGTATATAGGCTACGACTTCCAAAAAAGCTCT CCCGCCCCAAGTGAGCTATAATAGCTATAATAGCTCCAAAAGGAATAAGA GAATAGAGCTAAAACTTTAATTCCTCGTCCTCATGTGTTTTTTGGGCTAA CTGGTATAATATTACTAATATACTTGTATTATAGTGGCAGTATAGTAATT GTCATTCAAGGAGACTCCGTTGCTTCACTGCCACTGCTGCTGCTGCGGTG TTGTGGTTGTTGAAAAGGCTGGCTTCGTGGAAATGGAAGTAGACGCGATC ATTTCGGCCGACGGGGCGGCGCCTTTGCGCCTCAAAATGCGTCGAAAGTT GATGGAGGCTCTACTCTCGGGAACCACCGCGGCCGACCGGTTATCGATAG GTGAGTCCGACCACCTCTGGTAGACGGTACGCTACATGATAAGTGGCTAG ATGCAACAAGACTCCCTCTCCGATTGGATTTGACGGCGCTTCAATTTTAC CAAAAAATAAAATGAGGCGTTTTTTTGCTACTCTCTCTCTCTCTCTCTCT CGCGAAAACTTTATGATACCATGTACTATGAGAGGCAAGAAACTCCGCTT CTGAGTTATAGTCTATTCGATTCTATTAATAGAGTGTACGCGTGGTGGTA GGCACGGCGACGACTGGGTTCAGCGCAGACTGTCGCGCCTTGGTGGTACC ACTTAGGCTCGGCATGCAACATGAGGGACATGAGGGAAGGAAGCCATGTT TATATACAAGTGTCACCTGCGCCTGTTTCACTGTGGTCAAGGTGAAACTT GACAGTATCGTTGCGGATGCCTCTATATTGGTTGGTATAATATTGTATTT TATTTTAATCTTACGATGCTGTTAATGCTGGTGATGCGGACACGACAACG GCTGGGTTCAGTGCTACTGGTGATGCCACTTTGAGTGATGCAGCTCACGT GGAGGAATATGCAATCCTTGTTCACGAGTGCCATCTGCCGTGACGCGACG CTACTTGTTTGTTGTATTCATTCGCATTGTCACCGCTATCGTACGTCTTT GGTACATCTGTTGATGCGGACGACATTTGGTACGGCGAGCAGCGGCGTCG CGGGTGGCGACAGCGGTGGAGTGCGCCATGGATACGAACGACCCCTGCGC CTATAAAAAGGACAACTATCTGGAAAAGGCCAGGCAGCTCGTCTTCAACC TGAAGAAGAACCAGCAGCTCAGGCGCGTCGCGGAGGATCGCTTGATTTGC CGCGACCGCAATATTCGATATTTTATACCGTGTTTTGTGTGGGAAACTCC TTTGAAACGCGGGGACACCGCGGCATGAGAGAGTGCTTCAGAGAGACGAT ACCTAGGAATATTATATTGCATGTTGTGCTGTCGTTTCAACGGCGCCCCC TTCTAGCGAGCGAGTTTTCGTACAAAAAAAGAAGCGTTATGTACGATTCC GTCACCTCCTCCAGGTTTTGATCCGTCGCACTTTCAAGGAAAATGTCACA CGATACACTGCCCTCGTAACCTACTGAATATTACTATCGTGACGATATCG TGCGTGTTGGAAATTCTTAAGAGTTGTCTTGGGGGTAGGGTCCTTGAGCG TTAATTCACATGGCGGCATGCATTGCGTCGATGCATGCGCTGTGATGCTC TGCAGGGAAGACGTGCGAGAAGGTATTGTGACGGCGGAAAGGCTGGTCGT GATGACTTCATCCGAGCTAATGGCAAAAGACAAGCGAGAGGCTATGGACA GGGCGGTCAGCGAGAGGACCGAAGCGCGCATGTGAGTGAGATCATTTTTA TTTTGTTTGTTTAATGGGGAAGCGATACAACGCACTACTTTTGGGACAAG TGGTAGAGCCATGGCTCTTGGACAGCTTGTTTCATACCCCGGAGGTGGTA GTTGACTGTCCCCATCTTCTCTGCTCCGTGTCCTCGTCCGCGGGAACAGC GCGTAAAAAAGACTTGCCAGGTACAGGCTAAGCTGTTTTTCGAAAAAAAT CTGCCCGCGGTAAGTCTTCTCCACAAAATGCGGAATCTTGCGCCGTCAGC GACACCCGCGTTCGTGCCTCGAAAAAAACGAGAACACTACAGAGAGGACT CCCATTCCCGGCTGCGGTCACGGGAGTTGGTTGTCTACTAGATGGCGTTT TCTCACCCTCTTGCTCTGTTGTTTGCACGATACTTTTGCTATCCCTACGC TGTCCCCCCCCCTGTCCCCTGGTAGGTTGGACTGGGCAGAGAAGAACCAG GATAAGATCAACAAGCAGTGCGGCATCACGTCCCAGGAGGTTCGTGGCCC GCGTCTGTCGCTATTGTCGGCAAGCAGCTCTCAATTTCGATCTTTGCTCG CTTTGTTGGGTCCCCGCTCGTTTCCTTGATGTCAGGGCGTCGGCCCCGAC GATCCATGTTTTGGAGCTAACCCACCCCGTCCATGATCTTGTCCCCATCT TGTTTTATTGGTGCAGGGGCTGTTCGAGTGCGGTCGTTGCAAGTCAAACA AGACTACCTACACCCAGAAGCAGACCCGATCGGCCGACGAACCTATGACC ACGTTCGTCACCTGCACCAACTGCAAAAATCGATGGAAATTCTGCTGACG TTCTCGGATCACACGGGCTGGGTAGTCATCTCGGCACGGGCGTAGGGCTT TCAAAAGTCGGCCTAGGCCCGTAGAGCTACACCGTGTGCGACAAACCAAA TGCCAGCATTCCAGGTTGCTCTACCATCGTCGTTATTGTGGTGGCGTCGA TGGTTGCCAATGGTTGCCAATGGTTTGTTGCCTTTTCAGCGCCTCGGTGA TAGGCCCGCGTTGTTTTGTACTGGTAGGCTTAGTGCGTGTGGTAAGAAAA GTGATGGGGTCTTTGAGAACCGCGGATACTGTACAGTATTACTATCATTA GTACTAAGAGAAGCTCTAGTGGTACGGTTGTAGTAGTGTACTGCAGGTGG GATTAGTGTTTTGTAAGATGGTTCGGGCAGTTGAAATTTCCACGTCCGCA TCGTTTAGCGAAAAAAGACGAAGACGTTTCACGTACAGTGCAAGCAGGCC CTTCGAGACGCGCGATGTCTTTCTCGTCCAGCATGATATCTAGCTAGCCA CCATTGATGGCTACTGCGACGGGAATCTGTTCAGTTTTTGGACGATGTTG GCGGGCGGTGATGTTGTACGGTGTGCAGTGAGGGTTCAGGCGGAGTGCGC GAGTTGTCCGAGGGTAATCAGAGGAATCCCACGTTCGGTGTTGAAACGTC CGAAGCGCTCGCTACTACGTCTTAAAGCGAAGCACTTTCTACGTAGTGGT CAAAGGTGTTACTGTGTGTGTGTGCGTGTGTGGTTGTGTATCGTGTACAC CGCGGCAGGACCTGCAAGGAAGGCCATCCAATTTGAGTATGCACTGCAGG CATCGCTTTCCTTTAGTTTGCTTTACTTTCCAAGCTTCTACAGGAGAGAA ATGAATCAAAGAGGTTGGTCTCGTGTAGACGGAAATTTGGAGAAGGACAG CTATAGAGGGGGGAGATGATCAATCCGTACACGATTTCAGTGAGGACGGT ATCAAAGTATCGCCTATCAGGGGACATATCTGATTAAAATCCCCTGGCGA T
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1022:66892..72642+

>mRNA_A-nodosum_M_contig1022.5.4 ID=mRNA_A-nodosum_M_contig1022.5.4|Name=mRNA_A-nodosum_M_contig1022.5.4|organism=Ascophyllum nodosum dioecious|type=CDS|length=1044bp|location=Sequence derived from alignment at A-nodosum_M_contig1022:66892..72642+ (Ascophyllum nodosum dioecious)
ATGACCTTGGCAGCCCTGCAAAAGAGCAAGGTAGGAGCAGCGGTCTCGAA
ACTTAAGAAACACGCCAATCAGAAGGTTTCCAGCAGTGCTAAGACTCTTA
TCAAGAGGTGGAAAAAGGTGGCGGAGGCTTCGGGGGTAGCGGGGACGAGG
AAGCCCGGAAAGCCAGAAATAGGCAATATAAAAGCATCTTCGGTGGGTTC
ACATGGCGTACATCGCGTACAACAGGGGAAGCGAGAGGGAAAAGGAGAAG
GCGCTAAGGCGTTTGGTGGTGGTCGTGTTGGCCATGATGGGGGTGGTGGT
GGTGTTCCGACGACGCAGGGATCATCTGGAGCTGGGCCAGGAAAGGGAAC
AGTCGCAGTCGGGGAGTTGGCCAATCATATGGAGGAGGAGGAAGTTGGAA
TACTGTCTGTACTTGAAACGTCTAGGCTGTCGTTCCTAGCTCCACTCTCC
GTTGCAACTGCTGGCTTCGTGGAAATGGAAGTAGACGCGATCATTTCGGC
CGACGGGGCGGCGCCTTTGCGCCTCAAAATGCGTCGAAAGTTGATGGAGG
CTCTACTCTCGGGAACCACCGCGGCCGACCGGTTATCGATAGCGGCGTCG
CGGGTGGCGACAGCGGTGGAGTGCGCCATGGATACGAACGACCCCTGCGC
CTATAAAAAGGACAACTATCTGGAAAAGGCCAGGCAGCTCGTCTTCAACC
TGAAGAAGAACCAGCAGCTCAGGGAAGACGTGCGAGAAGGTATTGTGACG
GCGGAAAGGCTGGTCGTGATGACTTCATCCGAGCTAATGGCAAAAGACAA
GCGAGAGGCTATGGACAGGGCGGTCAGCGAGAGGACCGAAGCGCGCATGT
TGGACTGGGCAGAGAAGAACCAGGATAAGATCAACAAGCAGTGCGGCATC
ACGTCCCAGGAGGGGCTGTTCGAGTGCGGTCGTTGCAAGTCAAACAAGAC
TACCTACACCCAGAAGCAGACCCGATCGGCCGACGAACCTATGACCACGT
TCGTCACCTGCACCAACTGCAAAAATCGATGGAAATTCTGCTGA
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