prot_A-nodosum_M_contig10093.1.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig10093.1.1
Unique Nameprot_A-nodosum_M_contig10093.1.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length47
Homology
BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Match: A0A6H5KBM6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM6_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 5.180e-7
Identity = 23/45 (51.11%), Postives = 35/45 (77.78%), Query Frame = 0
Query:    1 MANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADMI 45
            +A N  SS R++HIDV+HH +R+  EEG++ + +V SEEQHAD++
Sbjct:  264 LAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADIL 308          
BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 5.340e-7
Identity = 23/45 (51.11%), Postives = 35/45 (77.78%), Query Frame = 0
Query:    1 MANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADMI 45
            +A N  SS R++HIDV+HH +R+  EEG++ + +V SEEQHAD++
Sbjct:  430 LAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADIL 474          
BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 5.340e-7
Identity = 23/45 (51.11%), Postives = 35/45 (77.78%), Query Frame = 0
Query:    1 MANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADMI 45
            +A N  SS R++HIDV+HH +R+  EEG++ + +V SEEQHAD++
Sbjct:  895 LAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADIL 939          
BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 5.340e-7
Identity = 23/45 (51.11%), Postives = 35/45 (77.78%), Query Frame = 0
Query:    1 MANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADMI 45
            +A N  SS R++HIDV+HH +R+  EEG++ + +V SEEQHAD++
Sbjct: 1162 LAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADIL 1206          
BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Match: A0A0A9YPH4_LYGHE (Copia protein n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9YPH4_LYGHE)

HSP 1 Score: 53.1 bits (126), Expect = 7.180e-7
Identity = 20/45 (44.44%), Postives = 37/45 (82.22%), Query Frame = 0
Query:    1 MANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADMI 45
            +A N+ +S+R +HID+KHH +R+ V+EG++++ YV + EQ+AD++
Sbjct:  280 LARNRENSKRIKHIDIKHHFIREKVDEGVIKLNYVSTSEQNADIL 324          
BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Match: A0A2S2NPY8_SCHGA (Copia protein (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2NPY8_SCHGA)

HSP 1 Score: 52.4 bits (124), Expect = 1.360e-6
Identity = 21/45 (46.67%), Postives = 34/45 (75.56%), Query Frame = 0
Query:    1 MANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADMI 45
            ++ N    RRT+HID++HH +R+ VEEG+V++ Y+ SE Q AD++
Sbjct:  510 LSQNPGHHRRTKHIDIRHHFIREKVEEGIVKLKYITSENQQADIL 554          
BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Match: A0A6H5KCG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG6_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.590e-6
Identity = 22/45 (48.89%), Postives = 35/45 (77.78%), Query Frame = 0
Query:    1 MANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADMI 45
            +A N  SS R++HIDV+HH +R+  EEG++ + +V S+EQHAD++
Sbjct:  193 LAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADIL 237          
BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Match: A0A8D8LM24_9HEMI (Copia protein n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8LM24_9HEMI)

HSP 1 Score: 52.0 bits (123), Expect = 1.680e-6
Identity = 22/44 (50.00%), Postives = 34/44 (77.27%), Query Frame = 0
Query:    1 MANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADM 44
            +ANN+ + +RT+HID+KHH +RD +E+G + + YV S +Q ADM
Sbjct:  205 LANNRENGKRTKHIDIKHHFIRDQIEKGNIIVKYVPSIQQIADM 248          
BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.860e-6
Identity = 22/45 (48.89%), Postives = 35/45 (77.78%), Query Frame = 0
Query:    1 MANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADMI 45
            +A N  SS R++HIDV+HH +R+  EEG++ + +V S+EQHAD++
Sbjct:  320 LAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADIL 364          
BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.870e-6
Identity = 22/45 (48.89%), Postives = 35/45 (77.78%), Query Frame = 0
Query:    1 MANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADMI 45
            +A N  SS R++HIDV+HH +R+  EEG++ + +V S+EQHAD++
Sbjct:  660 LAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADIL 704          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10093.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBM6_9PHAE5.180e-751.11Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K9B2_9PHAE5.340e-751.11Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKK1_9PHAE5.340e-751.11Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE5.340e-751.11Integrase catalytic domain-containing protein n=2 ... [more]
A0A0A9YPH4_LYGHE7.180e-744.44Copia protein n=1 Tax=Lygus hesperus TaxID=30085 R... [more]
A0A2S2NPY8_SCHGA1.360e-646.67Copia protein (Fragment) n=1 Tax=Schizaphis gramin... [more]
A0A6H5KCG6_9PHAE1.590e-648.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8D8LM24_9HEMI1.680e-650.00Copia protein n=1 Tax=Cacopsylla melanoneura TaxID... [more]
A0A6H5JRE7_9PHAE1.860e-648.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV80_9PHAE1.870e-648.89Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10093contigA-nodosum_M_contig10093:412..552 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10093.1.1mRNA_A-nodosum_M_contig10093.1.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig10093 412..741 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig10093.1.1 ID=prot_A-nodosum_M_contig10093.1.1|Name=mRNA_A-nodosum_M_contig10093.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=47bp
MANNKHSSRRTRHIDVKHHIVRDAVEEGLVRIVYVRSEEQHADMIG*
back to top