prot_A-nodosum_M_contig1007.3.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_A-nodosum_M_contig1007.3.1
Unique Name	prot_A-nodosum_M_contig1007.3.1
Type	polypeptide
Organism	Ascophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length	346

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_A-nodosum_M_contig1007.3.1 vs. uniprot

BLAST of mRNA_A-nodosum_M_contig1007.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29

ZOOM

x 1

POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 99..283 e-value: 1.3E-54 score: 187.5
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 1..95 e-value: 1.7E-28 score: 101.3
IPR001611	Leucine-rich repeat	PFAM	PF13855	LRR_8	coord: 174..232 e-value: 1.2E-6 score: 28.2
None	No IPR available	PANTHER	PTHR48054:SF26	LEUCINE-RICH REPEAT PROTEIN 1	coord: 119..192 coord: 1..72
None	No IPR available	PANTHER	PTHR48054	RECEPTOR KINASE-LIKE PROTEIN XA21	coord: 70..165 coord: 119..192
None	No IPR available	PANTHER	PTHR48054	RECEPTOR KINASE-LIKE PROTEIN XA21	coord: 46..120 coord: 153..263
None	No IPR available	PANTHER	PTHR48054:SF26	LEUCINE-RICH REPEAT PROTEIN 1	coord: 70..165 coord: 46..120 coord: 153..263
None	No IPR available	PANTHER	PTHR48054	RECEPTOR KINASE-LIKE PROTEIN XA21	coord: 1..72
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 2..268

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
A-nodosum_M_contig1007	contig	A-nodosum_M_contig1007:17201..46149 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ascophyllum nodosum dioecious OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_A-nodosum_M_contig1007.3.1	mRNA_A-nodosum_M_contig1007.3.1	Ascophyllum nodosum dioecious	mRNA	A-nodosum_M_contig1007 17201..46149 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_A-nodosum_M_contig1007.3.1 ID=prot_A-nodosum_M_contig1007.3.1|Name=mRNA_A-nodosum_M_contig1007.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=346bp
GNLEALVYLGLENNRLTGPIPSELGNIVTLITLGLDNNQLSGPIPPELGK
LEALNDLWLSNNRLTGPIPPELGKLEALVDLCLEKNGLTGPIPPELGKLE
ALVRLCLERNGLTGPIPSSLGNLKVLQLLSLEDNQLSGPIPSELGNIATL
ITLGLDNNQLSGPIPPELGKLEALVYLWLDFNRLTGPIPSSLGNLKVLQR
LSLKNNQLSGPIPPELGKLEALVHLSLRNNGLTGSVPVQLVNLVSLQAIN
FSGNELSGPLPSYSQLKKLCIALGCSDYRHGDLLQRGATAKMTEITEGIT
DEETEEMSLRKPGLSAMRTGYAVTERAPRTVAERTADFDGEVMAWS

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf
IPR001611	Leu-rich_rpt