prot_A-nodosum_M_contig10054.2.1 (polypeptide) Ascophyllum nodosum dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_A-nodosum_M_contig10054.2.1
Unique Nameprot_A-nodosum_M_contig10054.2.1
Typepolypeptide
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Sequence length301
Homology
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BLAST of mRNA_A-nodosum_M_contig10054.2.1 vs. uniprot
Match: A0A6H5KKF7_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF7_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.500e-20
Identity = 51/92 (55.43%), Postives = 69/92 (75.00%), Query Frame = 0 
Query:    1 MFSSDPKHLIKTSSAKGKLPKTEIRRRTLDPRWSSKTCQLTVSDPVALRHSHVCLIVMNREQG--VKDEILGVANFSLAEATWVNSQRPAPA 90
            +FSSDPKHL+K S A GK PKT ++++TL  +W+  + QL +SDPV LRHSHV L+VM++E+G   K E++GVAN SLAE  W+N+  PA A
Sbjct:  384 VFSSDPKHLVKASPA-GKPPKTTVKKKTLRAKWNKYSFQLAISDPVLLRHSHVSLVVMDKERGRNSKGEVIGVANLSLAEVLWINNSPPASA 474
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig10054.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKF7_9PHAE1.500e-2055.43C2 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000008C2 domainPFAMPF00168C2coord: 10..82
e-value: 3.2E-5
score: 24.2
IPR035892C2 domain superfamilyGENE3D2.60.40.150C2 domaincoord: 1..88
e-value: 6.4E-6
score: 27.9
IPR035892C2 domain superfamilySUPERFAMILY49562C2 domain (Calcium/lipid-binding domain, CaLB)coord: 5..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 249..268
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..125
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 245..268
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..114
NoneNo IPR availableCDDcd00030C2coord: 3..78
e-value: 1.05066E-4
score: 38.9723

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig10054contigA-nodosum_M_contig10054:5507..9020 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ascophyllum nodosum dioecious OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig10054.2.1mRNA_A-nodosum_M_contig10054.2.1Ascophyllum nodosum dioeciousmRNAA-nodosum_M_contig10054 5288..11341 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_A-nodosum_M_contig10054.2.1 ID=prot_A-nodosum_M_contig10054.2.1|Name=mRNA_A-nodosum_M_contig10054.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=301bp
MFSSDPKHLIKTSSAKGKLPKTEIRRRTLDPRWSSKTCQLTVSDPVALRH
SHVCLIVMNREQGVKDEILGVANFSLAEATWVNSQRPAPAPAATGRPAAR
QSSIASSRSGLQSSPALARGPGPVAPENRTLFATVGDIYCDAEGDADDFD
DTGIDFDGVDLEEEDADVGAARGSVEEIPAFDLLLVRNGLPRGRIRGRCS
LLLGPEKDGGGGEFLGGERGFRRRGHRDDIGCWWAGRRVWRGGRRRTESQ
TGAVRSQQGRSETPLSRAPASSPIPRLAWLLCKRGGGVNFRHKAGVQCTY
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000008C2_dom
IPR035892C2_domain_sf